Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  309  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100958121--100958188
22
3.0
23
76
6
66
55
2
1
39
1.24
100961473--100961552
40
2.0
40
95
0
142
43
18
7
30
1.78
100962489--100962641
78
2.0
78
90
0
243
41
15
13
30
1.85
100965639--100965686
25
1.9
25
95
0
87
29
14
12
43
1.82
100971345--100971392
25
2.0
24
83
4
60
41
8
4
45
1.53
100973658--100973706
10
4.9
10
80
9
64
20
10
2
67
1.30
100975573--100975608
13
2.8
14
84
16
51
27
25
0
47
1.52
100975560--100975600
18
2.2
19
87
12
59
29
24
0
46
1.53
100976097--100976135
18
2.1
19
90
4
62
48
10
0
41
1.37
100977451--100977512
5
12.0
5
80
13
72
56
1
0
41
1.09
100977456--100977510
12
4.4
12
80
17
67
56
1
0
41
1.10
100977451--100977513
22
3.0
21
83
9
83
55
1
0
42
1.09
100979275--100979321
16
2.9
16
77
0
58
34
0
34
31
1.58
100979311--100979399
44
2.0
44
84
8
117
37
5
21
35
1.77
100979573--100979661
12
8.2
11
72
21
57
53
2
0
43
1.13
100979590--100979661
34
2.1
35
85
12
96
50
2
0
47
1.15
100981350--100981448
29
3.0
35
72
22
113
24
15
20
40
1.90
100983221--100983287
5
13.4
5
83
0
80
31
22
2
43
1.68
100986057--100986179
32
3.8
32
90
0
201
34
8
10
46
1.70
100987802--100987831
3
9.7
3
92
7
51
66
0
0
33
0.92
100988214--100988256
21
2.0
21
82
8
52
60
0
4
34
1.17
100988277--100988310
12
2.9
12
95
4
61
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100988609--100988680
19
3.9
18
87
10
103
36
13
11
38
1.81
100988602--100988680
35
2.2
37
86
13
121
35
15
10
39
1.81
100988623--100988678
17
3.5
15
88
9
60
35
16
10
37
1.83
100989287--100989510
122
1.8
121
94
0
394
30
19
17
32
1.95
100990148--100990249
11
8.8
11
68
25
59
60
1
3
33
1.26
100990238--100990316
33
2.3
35
82
8
90
58
0
8
32
1.29
100990238--100990306
36
1.9
36
82
11
88
57
0
8
33
1.29
100991827--100992520
83
8.3
83
94
0
1174
27
19
19
33
1.96
100992438--100992666
119
1.9
119
86
1
325
31
17
16
34
1.92
101004593--101004631
20
2.0
20
84
0
51
58
2
2
35
1.25
101007436--101007486
21
2.4
21
86
0
66
33
35
3
27
1.75
101010966--101011009
16
2.8
16
77
16
56
56
0
2
40
1.11
101013335--101014053
356
2.0
356
98
0
1402
32
17
14
35
1.90
101022347--101022421
37
2.0
37
89
5
116
52
10
13
24
1.72
101028708--101028750
20
2.2
19
84
12
52
27
0
0
72
0.85
101030773--101030802
15
1.9
16
93
6
53
26
6
23
43
1.78
101037060--101037092
17
2.0
17
88
5
50
33
15
3
48
1.60
101037378--101037559
46
4.0
46
87
4
233
20
24
14
40
1.90
101042445--101042499
23
2.4
23
75
6
58
41
0
0
58
0.98
101042456--101042508
19
2.8
19
78
16
56
47
0
0
52
1.00
101042876--101042917
19
2.1
21
82
8
52
47
2
2
47
1.28
101042994--101043094
50
2.0
50
100
0
202
46
17
7
27
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101046727--101046778
15
3.6
14
79
7
59
57
0
3
38
1.17
101051661--101051697
2
18.5
2
100
0
74
51
0
48
0
1.00
101061078--101061135
29
1.9
31
89
6
93
60
6
0
32
1.23
101061154--101061201
10
4.6
10
87
7
69
62
2
0
35
1.07
101061154--101061201
21
2.3
22
85
10
73
62
2
0
35
1.07
101065712--101065758
19
2.5
19
80
10
53
78
8
2
10
1.04
101072368--101072572
3
66.7
3
71
11
121
61
3
5
28
1.37
101072422--101072548
46
2.7
46
80
4
119
62
4
5
26
1.37
101074597--101074663
33
2.0
33
100
0
134
25
11
17
44
1.83
101088599--101088706
31
3.5
31
73
12
114
34
2
8
54
1.45
101088589--101088710
61
2.0
61
93
0
208
35
2
9
53
1.46
101092175--101092210
15
2.4
14
86
13
54
55
5
0
38
1.23
101095278--101095550
46
6.0
46
82
1
289
41
13
23
21
1.89
101095290--101095545
91
2.8
91
84
3
309
42
14
22
20
1.88
101095290--101095568
137
2.0
137
81
1
317
42
14
21
20
1.88
101095831--101095863
17
2.0
17
94
5
59
48
0
15
36
1.45
101096550--101096611
27
2.3
27
81
10
65
69
4
1
24
1.17
101096667--101096752
27
3.2
25
81
15
102
62
1
3
32
1.19
101096761--101096837
37
2.0
40
87
10
115
45
2
0
51
1.14
101096829--101096891
28
2.2
28
82
2
81
39
3
0
57
1.15
101096991--101097030
19
2.2
18
86
4
53
30
5
2
62
1.29
101099446--101099495
15
3.4
16
73
18
54
64
2
6
28
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101100717--101101340
133
4.7
132
88
2
800
27
22
20
29
1.98
101112917--101112943
14
1.9
14
100
0
54
66
0
3
29
1.09
101113213--101113262
15
3.4
16
73
18
54
64
2
6
28
1.28
101114486--101115109
133
4.7
132
88
2
820
27
21
20
30
1.98
101114761--101114965
43
4.7
44
69
11
125
25
22
20
30
1.99
101121330--101121394
30
2.2
30
82
0
76
36
6
26
30
1.81
101121721--101121986
103
2.6
104
90
3
419
19
20
29
29
1.97
101128972--101128998
14
1.9
14
100
0
54
66
0
3
29
1.09
101129270--101129319
15
3.4
16
73
18
54
64
2
6
28
1.28
101132762--101132786
5
5.0
5
100
0
50
40
20
0
40
1.52
101134496--101134540
22
2.1
22
84
12
58
26
0
6
66
1.16
101139419--101139444
6
4.3
6
100
0
52
30
0
0
69
0.89
101145517--101145649
70
1.9
67
83
4
167
44
12
10
33
1.76
101145728--101145795
34
2.0
34
97
0
127
35
16
8
39
1.79
101148666--101148770
43
2.4
43
92
3
167
32
16
21
29
1.95
101154409--101154469
24
2.5
24
94
0
104
3
21
3
72
1.14
101154409--101154477
24
3.0
23
89
6
88
4
21
2
71
1.17
101154503--101154550
17
3.0
16
82
11
55
6
22
6
64
1.39
101155153--101155224
25
2.8
27
83
10
80
6
25
0
68
1.15
101163220--101163252
5
6.8
5
93
6
59
18
0
0
81
0.68
101163220--101163252
14
2.3
15
94
5
59
18
0
0
81
0.68
101163215--101163252
19
2.1
18
95
5
67
18
0
0
81
0.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101167620--101167651
5
6.6
5
92
7
57
18
0
0
81
0.70
101167620--101167650
9
3.3
9
91
8
53
19
0
0
80
0.71
101167757--101167786
6
4.8
6
95
4
51
86
0
0
13
0.57
101177830--101177877
20
2.3
21
79
13
55
33
2
0
64
1.05
101177842--101177890
21
2.4
20
86
3
62
32
0
4
63
1.13
101189619--101189740
60
2.0
60
93
0
208
27
18
16
38
1.91
101191576--101191606
11
2.7
11
95
5
53
77
0
3
19
0.90
101193069--101193137
16
4.4
15
80
14
77
37
2
8
50
1.48
101193081--101193139
31
1.9
31
92
0
100
35
3
6
54
1.44
101201488--101201521
8
4.1
8
85
7
50
20
5
0
73
1.04
101202520--101202544
3
8.3
3
100
0
50
32
0
0
68
0.90
101216287--101216323
17
2.2
17
90
0
56
45
0
2
51
1.15
101217314--101217376
11
5.9
11
90
7
103
28
30
0
41
1.56
101217314--101217376
20
3.0
21
90
9
101
28
30
0
41
1.56
101217315--101217382
31
2.2
31
94
0
118
27
32
0
39
1.57
101217403--101217433
15
2.1
15
93
0
53
22
6
0
70
1.09
101220201--101220739
126
4.3
126
89
0
783
26
21
17
34
1.96
101222430--101222562
39
3.4
39
73
12
112
28
27
20
24
1.99
101223115--101223147
5
6.6
5
100
0
66
60
0
0
39
0.97
101225542--101225598
30
2.0
29
80
16
66
47
3
1
47
1.29
101235304--101235344
16
2.6
16
88
0
55
39
2
9
48
1.49
101236868--101236905
20
1.9
20
84
10
51
42
5
0
52
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101237491--101237515
2
12.5
2
100
0
50
48
0
0
52
1.00
101240643--101240667
2
12.5
2
100
0
50
52
0
0
48
1.00
101240601--101240655
23
2.4
23
75
3
58
60
0
3
36
1.15
101244475--101244519
21
2.1
22
84
12
67
46
0
2
51
1.13
101244511--101244546
19
1.9
19
88
5
56
52
2
2
41
1.30
101248484--101248514
16
1.9
16
100
0
62
12
0
0
87
0.55
101252669--101252728
27
2.2
27
84
3
75
46
11
3
38
1.57
101253546--101253578
15
2.1
16
88
5
50
24
21
12
42
1.86
101256637--101256717
27
2.9
27
83
5
81
53
4
2
39
1.36
101256672--101256734
30
2.1
30
85
5
83
47
4
1
46
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352