genome.fa.s11.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  115  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36879374--36879424	25	2.0	25	82	17	61	39	0	7	52	1.30
36879464--36879522	20	2.8	21	79	10	75	52	1	0	45	1.10
36879426--36879546	57	2.2	54	78	11	127	53	2	0	43	1.14
36879498--36879543	24	1.9	24	86	8	67	47	2	0	50	1.13
36881983--36882063	40	2.0	40	100	0	162	37	14	14	33	1.88
36884238--36884309	32	2.2	32	92	0	126	30	6	26	36	1.83
36886777--36886950	46	3.7	47	75	13	171	31	27	20	21	1.98
36893513--36893662	38	3.9	38	84	3	183	18	20	27	33	1.96
36900911--36901273	46	7.7	47	74	12	207	27	19	29	23	1.98
36903704--36903743	13	3.1	13	85	0	62	17	32	32	17	1.93
36913734--36914215	48	10.0	48	93	0	793	34	6	26	31	1.82
36914356--36914458	37	2.8	37	93	0	170	24	19	31	25	1.98
36923303--36923524	46	4.7	48	77	10	194	28	19	31	21	1.97
36925267--36925298	12	2.7	12	100	0	64	21	31	0	46	1.52
36930907--36931077	93	1.8	93	96	0	315	28	29	21	21	1.98
36930902--36931074	46	3.7	46	80	13	219	28	28	21	21	1.98
36931497--36931556	30	2.0	30	90	0	93	30	25	8	36	1.85
36938484--36938654	93	1.8	93	93	0	297	28	28	21	21	1.98
36938479--36938651	46	3.7	46	77	13	201	29	27	20	21	1.98
36939072--36939131	30	2.0	30	90	0	93	30	25	8	36	1.85
36946607--36946729	22	5.3	22	64	27	67	31	13	29	26	1.93
36946535--36946799	47	5.6	47	92	0	415	33	10	28	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36946793--36946881	46	1.9	46	83	0	115	33	11	31	23	1.90
36947029--36947099	37	1.9	37	97	0	133	22	19	32	25	1.98
36953782--36954052	47	5.8	48	81	8	272	28	17	31	22	1.97
36953736--36954051	47	6.7	46	80	8	230	28	18	30	22	1.97
36953736--36954049	141	2.2	140	82	7	359	28	18	30	22	1.97
36955399--36955430	16	1.9	17	93	6	57	43	15	9	31	1.78
36955614--36955777	41	4.0	41	84	4	179	28	26	12	31	1.93
36955641--36955776	41	3.3	41	89	1	182	28	26	12	32	1.93
36963870--36964022	35	4.3	35	82	4	128	40	28	11	20	1.86
36967765--36967873	53	2.1	52	96	1	200	33	7	8	50	1.60
36967920--36968000	32	2.6	32	84	5	94	39	18	8	33	1.81
36970506--36970780	49	5.7	49	78	7	228	23	28	19	28	1.98
36970554--36970740	98	1.9	97	85	3	259	21	28	20	28	1.98
36974302--36974373	31	2.3	31	90	4	108	41	2	16	38	1.63
36980646--36980714	29	2.4	29	76	11	70	28	2	2	65	1.22
36980958--36980990	16	2.1	16	100	0	66	24	0	0	75	0.80
36985403--36985519	62	1.9	60	82	6	146	41	4	6	47	1.50
36988518--36989042	127	4.2	127	85	2	639	29	14	16	39	1.89
36989137--36989234	34	2.9	34	87	3	128	44	16	0	38	1.48
36990331--36990378	15	3.3	15	82	5	64	54	0	0	45	0.99
36990332--36990390	28	2.0	30	80	6	68	54	1	0	44	1.10
36999156--36999210	26	2.1	26	100	0	110	30	18	40	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37003574--37003820	49	5.0	50	80	4	284	26	17	26	29	1.98
37003577--37003820	100	2.5	99	84	6	323	26	18	26	29	1.98
37004183--37004218	18	2.0	18	100	0	72	44	5	11	38	1.63
37008938--37008980	20	2.2	20	83	8	52	74	0	20	4	1.00
37008937--37008996	27	2.4	24	83	10	68	71	0	23	5	1.05
37011026--37011081	26	2.2	26	83	6	69	10	28	0	60	1.30
37025058--37025105	3	16.0	3	100	0	96	33	0	0	66	0.92
37037747--37037839	39	2.4	39	85	0	132	34	19	22	23	1.96
37045727--37045817	39	2.3	39	86	0	128	35	20	21	21	1.96
37054169--37054330	42	3.8	42	81	4	191	30	26	15	27	1.96
37057188--37057363	46	3.8	46	77	12	189	28	30	21	19	1.98
37057195--37057367	93	1.9	93	92	0	292	27	30	21	20	1.98
37057239--37057382	46	3.1	45	71	11	121	29	29	20	20	1.98
37060575--37060678	28	3.7	27	77	10	95	23	25	21	29	1.99
37060601--37060756	54	2.8	55	86	4	226	25	28	16	30	1.96
37060608--37060762	28	5.6	28	74	11	131	25	29	15	30	1.96
37063732--37063831	52	2.0	51	82	4	121	40	14	13	33	1.84
37081659--37081831	40	4.3	40	82	2	177	30	13	27	28	1.94
37081659--37081833	80	2.2	80	77	4	199	30	13	26	28	1.94
37083436--37083507	24	3.0	24	95	0	126	38	15	20	25	1.92
37083543--37083793	51	4.9	51	85	2	335	33	13	23	30	1.92
37087331--37087390	30	2.0	30	90	0	93	28	25	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37098178--37098255	27	2.9	26	77	11	77	23	33	11	32	1.90
37099733--37099780	18	2.5	20	80	16	64	50	0	4	45	1.21
37099741--37099781	18	2.3	18	95	0	73	48	0	4	46	1.23
37101182--37101214	17	2.0	17	88	5	50	42	3	3	51	1.32
37105108--37105396	27	10.7	27	84	0	294	40	20	9	30	1.83
37105108--37105343	54	4.4	54	91	0	364	41	19	7	31	1.80
37105108--37105342	81	2.9	81	85	0	335	40	19	7	31	1.80
37105215--37105735	81	6.4	81	83	3	471	36	20	17	25	1.95
37105334--37105737	27	15.0	27	88	0	529	34	21	20	23	1.97
37106189--37106253	22	3.0	22	82	8	87	20	21	23	35	1.96
37106398--37106499	27	3.8	27	85	5	134	18	22	21	37	1.94
37106636--37106707	31	2.3	31	95	2	126	20	15	13	50	1.78
37106668--37106728	25	2.4	25	83	0	77	19	18	14	47	1.82
37106659--37106710	6	8.5	6	77	12	52	19	17	17	46	1.85
37114266--37114311	13	3.5	13	78	0	56	36	19	8	34	1.83
37118241--37118276	18	2.0	18	88	0	54	25	22	11	41	1.86
37123031--37123080	26	1.9	26	95	0	91	42	16	0	42	1.47
37144771--37144998	48	4.9	48	75	9	218	28	19	23	28	1.98
37161704--37161890	70	2.7	70	85	0	230	29	25	22	22	1.99
37161757--37161910	70	2.2	70	86	0	218	29	24	22	22	1.99
37161961--37162031	36	2.0	36	91	0	115	43	18	2	35	1.65
37165172--37165267	33	2.9	34	77	11	110	47	19	16	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37167223--37167255	17	1.9	17	93	0	57	33	0	0	66	0.92
37171404--37171429	12	2.2	12	100	0	52	23	26	15	34	1.94
37182235--37182417	40	4.6	39	87	5	224	24	23	26	25	2.00
37182271--37182453	79	2.3	80	81	4	194	24	24	26	24	2.00
37190333--37190518	41	4.6	41	89	3	261	24	24	26	24	2.00
37190335--37190488	81	1.9	82	90	4	249	24	24	25	25	2.00
37193393--37193495	21	4.9	21	87	0	134	16	24	17	41	1.89
37197675--37197723	20	2.7	18	77	22	57	51	2	2	44	1.24
37197960--37198007	18	2.8	17	81	12	62	31	12	4	52	1.58
37200409--37200456	16	3.0	15	84	9	51	47	8	6	37	1.59
37200684--37200840	59	2.7	59	91	1	253	22	15	16	45	1.85
37204683--37204713	15	2.1	15	93	0	53	22	12	9	54	1.67
37209669--37209844	46	3.8	44	77	8	165	22	19	29	28	1.98
37209665--37209836	93	1.8	93	88	2	265	22	19	30	27	1.98
37222910--37222975	24	2.7	25	77	9	66	21	28	10	39	1.86
37223061--37223122	26	2.4	25	81	2	61	24	25	17	32	1.97
37223234--37223302	25	2.8	25	84	0	75	18	27	20	33	1.96
37233171--37233902	48	15.0	48	93	2	1221	35	6	26	31	1.81
37233171--37233902	146	5.0	144	94	2	1239	35	6	26	31	1.81
37233171--37233902	98	7.5	96	95	1	1221	35	6	26	31	1.81
37234043--37234187	37	3.9	37	91	2	238	23	18	31	26	1.97
37234134--37234349	106	2.0	106	99	0	423	27	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37236627--37236808	40	4.6	40	90	1	249	26	29	23	20	1.99
37236592--37236808	80	2.7	79	87	3	285	25	28	23	22	1.99
37238052--37238168	52	2.3	52	96	1	218	17	20	10	52	1.73
37249667--37249769	37	2.8	37	92	0	170	25	31	19	24	1.98
37249910--37250283	48	7.8	48	96	0	676	30	29	5	34	1.81
37250256--37250311	28	2.0	28	96	0	103	23	30	10	35	1.89
37250160--37250402	119	2.0	123	92	5	406	29	30	6	33	1.83
37250112--37250450	167	2.0	170	94	4	605	29	29	6	33	1.83
37250284--37250501	48	4.6	48	90	4	331	30	27	5	35	1.81
37250064--37250498	215	2.0	219	93	3	745	30	28	5	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352