Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  161  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52627336--52627458
43
2.9
42
80
11
151
21
17
27
34
1.95
52639649--52639827
94
1.9
91
87
3
259
34
19
8
37
1.82
52639838--52639893
28
2.0
29
83
13
73
62
1
0
35
1.06
52639850--52639914
30
2.2
30
81
8
71
63
0
0
36
0.95
52640159--52640211
27
2.0
27
84
0
70
37
1
0
60
1.08
52644282--52644325
19
2.3
20
81
14
58
15
9
0
75
1.05
52644293--52644327
11
3.1
11
91
4
52
14
11
0
74
1.08
52644445--52644593
66
2.2
66
83
7
176
27
8
1
63
1.31
52649167--52649219
25
2.3
24
78
15
58
52
13
0
33
1.40
52649883--52649976
5
18.6
5
93
6
163
59
0
0
40
0.97
52649988--52650032
16
2.8
16
89
3
54
51
0
0
48
1.00
52650950--52650994
19
2.4
19
85
7
56
24
22
11
42
1.86
52661769--52661992
40
5.7
40
83
7
242
25
27
20
25
1.99
52661769--52661992
79
2.8
78
80
6
254
25
27
20
25
1.99
52661924--52662001
40
1.9
41
82
10
97
26
28
20
24
1.99
52669636--52669858
39
5.7
40
82
8
233
25
27
21
26
1.99
52669636--52669858
79
2.8
78
81
9
247
25
27
21
26
1.99
52669790--52669867
40
1.9
41
82
10
97
26
28
20
24
1.99
52672185--52672842
44
14.6
44
71
10
330
33
16
19
30
1.94
52672188--52672629
133
3.3
133
79
9
419
32
16
20
30
1.95
52672226--52672844
229
2.7
227
82
4
708
33
16
19
30
1.94
52672185--52672680
89
5.5
89
73
8
351
33
16
19
29
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52672998--52673030
16
2.1
16
88
11
50
66
18
0
15
1.25
52674414--52674557
64
2.4
60
79
10
161
31
7
2
59
1.37
52674441--52674589
64
2.3
64
82
7
178
27
8
1
63
1.31
52683333--52683411
23
3.3
23
73
7
68
40
21
21
16
1.91
52686999--52687028
16
1.9
15
93
6
51
16
0
6
76
0.99
52687621--52687694
35
2.1
35
85
9
98
28
6
20
44
1.76
52687691--52687724
11
3.1
11
86
0
50
38
0
2
58
1.13
52704485--52704520
16
2.2
16
100
0
72
38
0
30
30
1.58
52705470--52705507
19
2.0
19
94
0
67
34
10
13
42
1.78
52711143--52711203
30
2.0
30
87
0
86
37
8
24
29
1.84
52711938--52712121
67
2.8
65
77
7
187
28
16
31
23
1.96
52713487--52713614
46
2.7
47
81
13
158
21
21
28
28
1.99
52714587--52715096
47
10.6
47
89
4
759
29
29
8
33
1.86
52714587--52715096
96
5.3
96
95
1
871
29
29
8
33
1.86
52717289--52717467
85
2.1
85
98
0
349
26
27
8
37
1.85
52723686--52723750
15
4.4
15
78
16
73
9
13
13
63
1.53
52723682--52723750
30
2.3
31
83
14
92
8
13
17
60
1.56
52725882--52726025
49
2.9
48
84
4
198
25
20
27
26
1.99
52732392--52732615
26
8.6
26
75
6
134
31
25
14
28
1.95
52732449--52732598
52
2.9
52
81
4
160
32
24
13
30
1.93
52732398--52732607
78
2.7
78
76
3
197
32
25
14
28
1.94
52735610--52735635
13
2.0
13
100
0
52
23
30
0
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52740694--52740739
23
1.9
25
86
8
69
52
0
2
45
1.13
52743441--52743500
23
2.6
23
75
15
61
53
8
8
30
1.60
52744322--52744377
27
2.1
27
93
0
94
37
17
17
26
1.93
52751606--52751909
47
6.4
47
91
1
428
27
30
8
33
1.86
52755042--52755146
39
2.7
39
96
0
192
22
24
21
30
1.99
52763225--52763329
39
2.7
39
96
0
192
22
24
21
30
1.99
52775258--52775552
50
5.9
50
91
0
464
29
20
28
22
1.98
52777408--52777722
47
6.8
45
73
19
238
26
18
30
24
1.98
52777505--52777610
44
2.4
42
86
10
133
26
17
29
26
1.98
52794310--52794346
14
2.6
14
95
0
65
21
32
13
32
1.92
52795157--52795188
16
2.0
16
100
0
64
12
12
6
68
1.37
52795977--52796017
20
2.0
20
85
0
55
29
19
14
36
1.92
52799520--52799544
5
5.0
5
100
0
50
40
0
0
60
0.97
52808839--52808879
15
2.8
15
85
10
50
31
4
4
58
1.40
52814399--52814456
28
2.1
28
96
0
107
31
8
24
36
1.85
52816652--52816677
9
2.9
9
100
0
52
23
19
34
23
1.96
52827717--52827753
19
2.0
19
89
5
58
27
0
0
72
0.84
52832806--52832839
16
2.1
16
100
0
68
38
20
5
35
1.77
52843152--52843178
5
5.4
5
100
0
54
77
0
0
22
0.76
52843412--52843467
28
2.0
28
100
0
112
39
21
7
32
1.80
52845752--52845803
26
2.0
26
92
0
86
30
34
21
13
1.92
52845512--52845879
103
3.6
103
92
2
587
30
29
19
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52849397--52849431
15
2.3
15
90
0
52
28
14
17
40
1.88
52855653--52856060
130
3.1
130
84
2
498
30
18
14
36
1.90
52855956--52856128
94
1.8
94
87
0
256
30
17
13
39
1.88
52856140--52856467
130
2.5
130
86
3
421
33
17
13
35
1.89
52863251--52863318
25
2.7
25
93
0
109
25
23
25
26
2.00
52863366--52863435
21
3.3
21
91
0
113
37
17
8
37
1.80
52863366--52863442
5
14.8
5
71
12
57
36
16
9
37
1.81
52863363--52863424
31
2.0
31
84
6
81
40
16
6
37
1.74
52871245--52871292
6
7.8
6
82
13
62
52
14
16
16
1.76
52871230--52871291
18
3.4
18
76
22
58
51
16
16
16
1.77
52871680--52872167
27
18.1
27
86
0
584
40
7
21
30
1.81
52872173--52872286
27
4.3
26
75
9
95
29
10
21
37
1.87
52875735--52875813
39
2.0
39
97
0
149
31
12
16
39
1.86
52892200--52892256
26
2.2
25
81
9
62
19
24
19
36
1.94
52892222--52892415
25
7.8
25
68
16
82
18
25
23
32
1.97
52892358--52892419
24
2.6
24
77
10
72
16
25
22
35
1.94
52892220--52892415
73
2.7
73
75
9
173
18
25
22
32
1.97
52892334--52892437
48
2.1
49
80
7
113
18
25
22
33
1.96
52892407--52892471
25
2.6
25
80
4
69
26
21
15
36
1.93
52895462--52895537
10
7.7
10
71
16
52
64
3
1
30
1.20
52895739--52895789
26
2.0
25
88
3
75
39
0
0
60
0.97
52897681--52897705
10
2.5
10
100
0
50
8
0
0
92
0.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52901119--52901172
26
2.1
26
100
0
108
25
14
11
48
1.77
52939373--52939465
43
2.2
44
92
3
154
51
13
6
27
1.66
52939488--52939527
19
2.2
18
90
4
62
42
17
2
37
1.63
52942696--52942878
79
2.3
80
84
7
230
25
27
22
24
2.00
52942677--52942878
40
5.1
40
82
8
234
25
27
22
24
2.00
52945687--52945862
46
3.8
46
79
12
216
20
21
29
28
1.98
52945684--52945855
93
1.8
93
96
0
317
20
21
29
27
1.98
52953567--52953749
79
2.3
81
84
7
232
25
27
22
24
2.00
52953546--52953749
40
5.1
40
82
8
238
25
27
22
24
2.00
52958307--52958399
43
2.2
44
92
3
154
51
13
6
27
1.66
52958422--52958461
19
2.2
18
90
4
62
42
17
2
37
1.63
52960220--52960248
8
3.6
8
100
0
58
24
0
0
75
0.80
52960221--52960258
16
2.4
16
86
8
51
26
0
0
73
0.83
52971348--52971522
46
3.8
45
75
12
167
20
20
29
29
1.97
52979239--52979309
33
2.2
33
82
10
83
52
1
1
45
1.18
52979420--52979446
5
5.4
5
100
0
54
40
0
0
59
0.98
52979531--52979567
16
2.3
17
81
13
51
70
0
27
2
1.01
52981117--52981145
15
1.9
15
100
0
58
34
20
13
31
1.92
52988924--52988996
15
4.9
15
81
6
85
54
15
15
15
1.71
52997173--52997495
27
11.9
27
75
6
159
39
19
7
32
1.80
52997245--52997470
54
4.2
52
75
8
177
41
19
7
31
1.80
52997515--52997577
27
2.3
27
74
15
67
38
23
17
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52998398--52998479
24
3.4
24
81
8
87
29
21
21
26
1.99
52998686--52998768
31
2.7
31
92
3
134
30
15
25
28
1.96
53005375--53005533
43
3.7
43
82
12
193
30
25
20
23
1.98
53013481--53013534
27
2.0
27
85
7
74
29
22
16
31
1.96
53013678--53013747
26
2.8
25
76
4
77
18
24
22
34
1.96
53016923--53017107
55
3.4
53
79
10
196
21
24
15
38
1.92
53016900--53017107
55
3.8
53
79
9
190
22
25
14
37
1.92
53031124--53031281
29
5.4
29
82
6
187
41
12
24
20
1.87
53031096--53031305
87
2.4
87
84
3
280
40
12
24
22
1.89
53031182--53031339
29
5.4
29
73
10
90
38
12
22
26
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352