genome.fa.s11.2.7.7.80.10.50.1000.332.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  332  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106925231--106925306	38	2.0	38	87	5	109	59	5	0	35	1.20
106925231--106925325	38	2.6	35	80	15	104	57	6	0	35	1.24
106925280--106925330	24	2.1	24	92	0	84	56	9	1	31	1.43
106925240--106925325	11	8.1	11	74	19	67	58	6	0	34	1.25
106925465--106925493	3	9.7	3	100	0	58	65	0	0	34	0.93
106930127--106930157	12	2.6	12	94	0	53	74	0	25	0	0.82
106931111--106931198	39	2.3	38	80	5	97	23	23	26	26	2.00
106931301--106931340	18	2.2	18	86	8	55	47	0	22	30	1.52
106931828--106931865	20	1.9	20	84	10	51	47	0	10	42	1.38
106932478--106932521	19	2.2	20	96	4	81	50	11	11	27	1.72
106948556--106948594	21	1.9	21	89	5	62	23	23	7	46	1.78
106952319--106952378	23	2.7	21	80	10	66	70	5	1	23	1.16
106952744--106952808	32	2.0	32	100	0	130	30	12	15	41	1.84
106955427--106955467	21	2.0	21	81	18	50	21	26	19	31	1.97
106963164--106963661	150	3.3	150	83	3	617	32	17	8	41	1.78
106964369--106964420	21	2.4	21	74	6	50	36	3	5	53	1.43
106965821--106965869	14	3.5	14	75	10	55	44	0	2	53	1.12
106966889--106967014	37	3.4	37	82	11	141	21	19	9	50	1.75
106973074--106973112	21	1.9	19	90	10	60	23	30	7	38	1.83
106976760--106976829	19	3.6	19	80	7	70	54	5	1	38	1.33
106976851--106976904	21	2.6	21	80	8	58	70	3	3	22	1.19
106977476--106977516	13	3.2	13	85	0	55	46	0	14	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106983658--106983717	10	6.0	10	84	11	70	66	1	8	23	1.28
106983731--106983768	13	2.8	13	88	4	58	44	13	0	42	1.43
106988488--106988517	13	2.3	13	94	0	51	36	33	0	30	1.58
106988601--106988918	138	2.3	138	87	0	447	20	22	14	42	1.88
106988601--106988920	46	7.0	46	86	0	399	20	22	14	42	1.88
106990745--106990813	30	2.3	31	75	12	72	53	5	0	40	1.25
106996224--106996325	34	3.1	34	87	5	154	20	2	16	59	1.49
107001607--107001702	41	2.4	41	82	1	131	33	21	25	19	1.97
107002252--107002300	24	2.0	24	100	0	98	53	0	4	42	1.20
107002915--107002949	9	3.7	10	92	7	56	82	0	5	11	0.82
107002915--107002954	9	4.2	9	87	9	53	82	0	5	12	0.82
107004464--107004507	23	1.9	23	90	0	70	22	9	20	47	1.78
107007045--107007216	93	1.8	93	87	0	254	29	28	19	22	1.98
107007037--107007213	46	3.8	46	74	4	167	29	27	19	23	1.98
107010665--107010720	24	2.4	24	85	8	71	46	10	5	37	1.62
107011237--107011270	18	1.9	17	88	5	50	47	5	14	32	1.69
107011368--107011428	19	2.9	21	73	16	63	52	3	0	44	1.17
107011350--107011413	19	3.4	21	72	20	61	57	4	0	37	1.19
107011654--107011834	90	2.0	91	91	3	294	43	13	14	28	1.83
107017342--107017374	16	2.1	16	94	0	57	42	12	21	24	1.86
107018917--107019044	39	3.3	39	89	0	202	21	26	21	31	1.98
107023795--107024393	152	4.1	147	78	9	545	30	16	8	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107023793--107024316	152	3.5	149	80	6	576	30	16	8	44	1.77
107024998--107025049	22	2.4	21	74	6	50	38	5	3	51	1.44
107027043--107027203	37	4.3	37	88	3	243	22	16	9	50	1.74
107028836--107028869	17	1.9	18	88	5	52	50	0	0	50	1.00
107029143--107029222	36	2.2	37	80	10	94	27	6	30	36	1.81
107034961--107035010	10	5.0	10	81	13	59	22	8	2	68	1.26
107035301--107035332	15	2.1	15	94	0	55	15	34	28	21	1.94
107039197--107039245	25	2.0	25	88	8	73	24	20	18	36	1.94
107044701--107044981	3	94.3	3	68	12	125	30	6	2	60	1.33
107044940--107044993	24	2.3	23	82	14	67	22	9	0	68	1.17
107050584--107050622	7	5.3	7	90	9	60	66	2	0	30	1.05
107050584--107050622	15	2.6	14	88	11	60	66	2	0	30	1.05
107050580--107050629	8	6.5	8	88	4	59	66	2	2	30	1.14
107050584--107050629	16	3.1	15	90	6	67	65	2	2	30	1.16
107050836--107050902	29	2.3	29	84	5	82	58	4	4	32	1.38
107050777--107050998	25	9.0	25	71	14	124	56	4	5	34	1.41
107050783--107050946	27	6.4	27	70	17	93	55	4	6	34	1.44
107051485--107051629	30	4.8	30	88	5	195	20	3	48	26	1.65
107051506--107051629	60	2.1	60	95	0	221	20	3	49	26	1.64
107052338--107052619	75	3.8	73	86	6	367	36	20	18	25	1.95
107052343--107052619	147	1.9	145	88	4	414	36	19	18	25	1.95
107052563--107052673	54	2.1	54	91	0	177	40	16	13	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107052759--107052791	15	2.2	15	94	0	57	66	6	15	12	1.42
107052774--107054289	71	20.0	73	75	16	1179	33	21	17	27	1.95
107053304--107053332	14	2.1	14	100	0	58	65	6	13	13	1.45
107052774--107054219	232	6.3	231	87	10	2023	33	21	17	27	1.95
107052775--107054219	463	3.2	464	89	8	2097	33	21	17	27	1.95
107053765--107053792	13	2.2	13	100	0	56	64	7	14	14	1.48
107053997--107054024	13	2.2	13	100	0	56	64	7	14	14	1.48
107053918--107054077	89	1.8	86	88	6	241	35	20	17	27	1.95
107054005--107054289	70	4.0	71	90	4	416	32	21	17	27	1.96
107054005--107054289	141	2.0	141	87	4	414	32	21	17	27	1.96
107064200--107064247	16	3.1	15	90	6	69	64	2	2	31	1.16
107064196--107064251	24	2.3	24	81	6	69	66	1	1	30	1.12
107064196--107064247	8	6.5	8	82	8	61	65	1	1	30	1.14
107064453--107064519	29	2.3	29	84	5	82	58	4	4	32	1.38
107064394--107064609	25	8.8	25	71	14	119	56	4	5	34	1.42
107064400--107064563	27	6.4	27	70	17	93	55	4	6	34	1.44
107065097--107065271	30	5.8	30	88	1	228	21	4	48	26	1.68
107065399--107065481	41	2.0	41	92	0	139	27	3	31	37	1.74
107065910--107065956	23	2.0	23	100	0	94	25	17	8	48	1.74
107066915--107067221	89	3.5	89	69	13	254	30	16	26	26	1.97
107066891--107067377	177	2.8	176	89	0	726	30	16	26	26	1.97
107067314--107067499	44	4.3	43	73	7	137	31	19	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107067690--107068046	44	8.1	43	65	15	140	33	22	21	22	1.98
107067627--107068019	88	4.5	88	87	0	561	33	21	22	22	1.98
107067628--107068019	177	2.2	176	90	0	613	32	21	22	22	1.98
107068173--107068421	44	5.7	44	72	5	200	31	20	21	26	1.98
107069699--107069887	3	62.3	3	69	18	90	29	5	4	60	1.37
107069713--107069887	20	8.6	20	67	17	65	28	5	4	61	1.39
107069699--107069789	31	3.0	31	77	6	89	32	3	2	61	1.24
107069843--107069898	27	2.2	25	84	12	69	23	7	0	69	1.12
107073209--107073335	68	1.9	67	93	4	220	34	16	8	40	1.79
107075036--107075389	174	2.0	175	86	1	494	28	16	18	36	1.93
107076706--107076838	17	7.5	17	81	6	158	39	11	12	36	1.79
107076697--107076838	35	4.0	35	90	2	212	39	10	13	36	1.79
107077316--107077381	17	3.9	17	71	23	59	34	1	0	63	1.04
107080836--107080891	22	2.6	22	83	5	62	73	7	0	19	1.06
107080846--107080875	15	1.9	16	93	6	53	73	6	0	20	1.05
107080845--107080878	15	2.2	15	84	5	50	76	5	0	17	0.98
107081558--107081610	22	2.6	19	80	16	54	32	0	3	64	1.12
107081552--107081608	25	2.3	25	78	6	71	31	0	3	64	1.10
107081651--107081691	17	2.4	17	83	0	55	36	4	2	56	1.34
107081632--107081721	31	2.9	30	80	14	85	32	6	4	56	1.45
107081455--107081721	3	88.3	3	68	14	81	29	5	4	61	1.38
107081712--107082369	144	4.7	136	79	15	537	30	3	5	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107081974--107082010	3	12.0	3	88	5	56	32	0	0	67	0.91
107081872--107082410	143	4.0	128	79	15	518	29	3	5	61	1.34
107081972--107082369	143	2.8	140	85	6	541	32	3	4	60	1.33
107082122--107082164	23	1.9	22	86	13	61	32	0	9	58	1.30
107082148--107082187	10	4.1	10	83	3	55	37	0	10	52	1.35
107082137--107082192	16	3.6	16	76	7	53	33	0	7	58	1.25
107082244--107082280	18	2.1	18	89	0	56	37	2	2	56	1.28
107084832--107084872	18	2.3	18	86	0	55	46	4	31	17	1.69
107087534--107087573	13	3.2	13	82	7	55	10	10	2	77	1.08
107088673--107088710	19	2.0	19	85	10	51	50	2	5	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352