genome.fa.s11.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  127  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40707521--40707609	12	7.5	11	76	13	72	17	4	1	76	1.02
40707525--40707599	17	4.5	16	82	11	71	17	5	1	76	1.05
40709291--40709466	46	3.8	46	78	10	187	21	21	28	28	1.98
40717666--40717703	18	2.1	19	90	5	60	31	5	18	44	1.72
40722760--40722842	39	2.1	39	86	0	121	44	14	10	30	1.79
40724678--40724777	49	2.0	49	100	0	200	48	20	12	20	1.80
40726780--40727000	40	5.6	40	88	3	313	22	22	27	28	1.99
40736519--40736583	29	2.3	29	83	2	78	29	24	3	43	1.69
40759221--40759245	13	1.9	13	100	0	50	24	24	32	20	1.98
40761219--40761396	40	4.5	40	85	3	173	25	28	23	23	2.00
40761219--40761396	80	2.2	80	85	3	225	25	28	23	23	2.00
40769250--40769467	40	5.5	40	86	1	260	26	28	22	22	1.99
40772824--40772911	45	2.0	45	97	0	167	21	20	21	36	1.95
40777432--40777461	14	2.1	14	100	0	60	43	13	20	23	1.86
40781827--40782049	40	5.6	40	86	4	288	24	23	25	26	2.00
40781827--40782049	82	2.8	80	87	6	292	24	23	25	26	2.00
40794599--40794666	28	2.4	28	85	0	100	17	22	42	17	1.89
40799570--40799599	16	1.9	15	93	6	51	33	23	0	43	1.54
40801671--40801766	40	2.5	40	80	10	117	37	35	12	14	1.84
40807718--40807842	50	2.5	50	86	1	171	31	28	14	26	1.95
40812860--40812900	18	2.3	17	80	12	55	39	2	4	53	1.35
40814982--40815037	23	2.4	24	84	3	69	66	3	5	25	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40817393--40817431	12	3.2	12	85	7	60	79	0	12	7	0.93
40817392--40817431	13	3.2	13	92	7	73	80	0	12	7	0.91
40821943--40822587	50	12.9	50	78	4	602	27	17	24	30	1.97
40821943--40822573	250	2.5	252	84	2	797	27	17	24	30	1.97
40822043--40822581	150	3.6	150	84	2	697	26	17	25	30	1.97
40829327--40829534	46	4.4	45	78	12	156	25	29	17	27	1.97
40836894--40836951	28	2.0	28	87	9	82	15	43	22	18	1.88
40837193--40837226	12	2.8	12	86	0	50	11	29	23	35	1.90
40838026--40838147	46	2.6	46	84	5	138	22	30	19	27	1.98
40842327--40842383	23	2.5	23	85	0	78	35	22	22	19	1.96
40844638--40844758	46	2.6	46	77	13	124	31	17	27	23	1.97
40844821--40844976	48	3.2	48	77	3	145	30	22	24	22	1.99
40847181--40847297	28	4.1	28	84	4	128	27	31	12	28	1.93
40850795--40850917	43	2.9	43	79	7	133	27	15	24	32	1.95
40850845--40850941	43	2.3	43	83	3	115	32	15	22	28	1.95
40853407--40853478	25	2.9	25	83	6	92	25	19	23	31	1.98
40853524--40853563	21	1.9	21	94	0	71	35	20	10	35	1.86
40853539--40853569	16	1.9	16	93	0	53	35	19	9	35	1.85
40861444--40861516	25	2.9	25	89	0	110	24	21	24	28	1.99
40861418--40861516	50	2.0	50	82	7	121	24	22	23	30	1.99
40863904--40864030	63	2.0	63	96	0	236	40	11	20	26	1.87
40876131--40876175	22	2.0	22	86	8	63	33	17	6	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40884823--40884997	35	5.0	35	79	0	152	26	10	20	42	1.84
40902767--40902925	35	4.5	35	80	0	174	29	9	18	42	1.82
40902767--40902925	70	2.3	70	83	0	192	29	9	18	42	1.82
40906768--40906947	68	2.6	67	77	13	181	32	15	29	22	1.95
40923891--40923977	45	1.9	45	92	0	147	24	13	25	36	1.92
40928346--40928460	42	2.7	43	78	8	128	28	28	16	26	1.97
40933787--40933819	15	2.2	15	100	0	66	27	6	12	54	1.60
40934371--40934507	45	3.0	45	86	0	202	23	13	26	36	1.92
40935720--40935750	16	1.9	16	93	0	53	35	22	0	41	1.54
40935717--40935756	20	2.0	20	85	0	53	37	22	0	40	1.54
40935944--40936195	53	4.8	51	78	8	179	21	24	15	38	1.92
40935988--40936195	53	3.9	54	81	7	235	22	25	16	36	1.94
40936534--40936592	30	2.0	30	83	6	75	30	25	3	40	1.72
40936902--40936944	18	2.4	18	92	0	77	65	11	9	13	1.48
40936909--40936940	9	3.4	10	83	16	50	65	9	6	18	1.42
40939302--40939354	26	2.0	26	96	0	97	37	13	15	33	1.86
40948259--40948336	34	2.3	35	85	12	110	29	21	20	28	1.98
40961210--40961402	55	3.6	54	76	3	201	37	19	22	20	1.94
40966860--40966922	28	2.2	28	88	0	90	31	22	20	25	1.98
40967080--40967164	27	3.2	26	76	12	84	36	18	21	23	1.95
40967331--40967513	27	6.8	26	91	3	267	25	23	16	34	1.95
40978464--40978639	46	3.8	46	78	12	207	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40978461--40978632	93	1.8	93	94	0	308	20	20	29	28	1.98
40979759--40980125	102	3.6	104	94	2	618	18	20	30	30	1.96
40986877--40987144	104	2.6	105	92	1	432	18	20	30	30	1.96
40994881--40995052	45	3.8	45	77	14	192	20	20	29	29	1.98
41003167--41003293	37	3.4	38	87	3	168	24	20	29	25	1.99
41010807--41010929	38	3.3	38	91	1	194	23	20	30	26	1.99
41014698--41014938	47	5.1	47	90	2	365	31	8	30	28	1.87
41014699--41014938	96	2.5	94	91	1	381	32	8	30	28	1.87
41015056--41015134	37	2.1	37	90	0	122	24	18	31	25	1.98
41016509--41016613	39	2.6	39	82	7	122	28	21	26	22	1.99
41016509--41016653	40	3.6	40	80	7	127	27	22	26	23	1.99
41016592--41016744	40	3.8	40	91	0	234	23	21	30	24	1.99
41016907--41016961	25	2.2	25	77	6	58	32	10	29	27	1.91
41020318--41020559	47	5.1	47	92	1	367	31	9	31	27	1.89
41020678--41020756	37	2.1	37	88	0	113	24	20	31	24	1.98
41028763--41028824	30	2.1	30	96	0	115	33	14	17	33	1.90
41042173--41042306	39	3.5	40	86	2	123	26	29	21	22	1.99
41042191--41042316	39	3.2	39	90	0	189	28	28	19	23	1.98
41057325--41057508	79	2.3	79	81	9	223	26	26	21	25	2.00
41057325--41057508	40	4.7	40	86	4	223	26	26	21	25	2.00
41065333--41065516	78	2.3	81	86	6	252	25	27	22	23	2.00
41065314--41065516	40	5.1	40	85	7	254	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41068706--41068852	57	2.6	57	79	9	156	29	18	22	29	1.97
41070876--41070949	29	2.6	29	84	4	87	25	31	14	28	1.95
41083639--41083668	16	1.9	16	93	6	53	30	0	20	50	1.49
41094349--41094389	19	2.2	19	95	0	73	51	4	17	26	1.65
41096482--41096511	13	2.3	13	100	0	60	23	13	13	50	1.77
41096887--41096979	24	3.8	24	71	16	59	52	3	0	44	1.17
41096912--41096977	17	3.9	17	72	16	57	50	1	0	48	1.10
41099087--41099149	26	2.4	26	86	5	83	38	1	6	53	1.36
41113682--41113853	93	1.8	93	95	2	310	28	29	20	20	1.98
41113675--41113850	46	3.8	46	79	14	209	29	29	20	20	1.98
41121256--41121427	93	1.8	93	92	4	294	28	29	20	20	1.98
41121249--41121424	46	3.8	46	76	16	193	29	29	20	20	1.98
41125206--41125250	22	2.0	22	95	0	81	15	37	8	37	1.79
41132858--41132909	27	1.9	27	84	7	70	51	13	1	32	1.52
41137422--41137481	28	2.2	27	84	3	75	23	23	25	28	2.00
41138200--41138239	20	2.0	20	85	9	55	32	5	17	45	1.70
41143251--41143277	12	2.2	12	100	0	54	7	22	44	25	1.79
41150245--41150291	20	2.3	21	81	3	60	59	21	2	17	1.47
41151313--41151427	29	4.0	29	76	6	101	31	26	13	28	1.94
41151486--41151531	19	2.6	18	82	6	58	19	36	21	21	1.95
41152896--41152926	16	1.9	16	93	0	53	9	0	35	54	1.33
41157814--41157939	46	2.7	46	90	0	189	30	26	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41173854--41173908	27	2.0	27	96	0	101	54	7	1	36	1.39
41174053--41174105	28	1.9	28	88	11	83	26	22	20	30	1.98
41184080--41184142	31	2.1	30	87	3	90	41	0	20	38	1.53
41186954--41187048	42	2.3	43	80	10	108	26	26	17	29	1.98
41187853--41187945	40	2.3	40	90	3	143	23	21	27	26	1.99
41190477--41190585	6	17.8	6	70	14	71	48	13	18	19	1.81
41190488--41190585	37	2.6	37	86	0	133	48	13	18	19	1.80
41190528--41190595	31	2.2	31	86	0	91	47	13	19	20	1.82
41190813--41190863	27	1.9	26	84	4	66	35	19	27	17	1.94
41190774--41190937	67	2.4	67	95	0	292	31	21	28	18	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352