genome.fa.s11.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  195  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64348496--64348543	24	1.9	26	83	8	64	25	2	2	70	1.09
64354713--64354940	48	4.9	48	77	10	238	27	21	22	29	1.99
64354713--64354940	91	2.4	94	84	6	268	27	21	22	29	1.99
64356579--64356669	46	2.0	46	86	0	128	25	31	8	34	1.86
64356686--64356810	22	5.4	22	64	29	64	24	27	12	36	1.92
64356668--64357117	141	3.2	141	89	0	666	26	27	12	33	1.92
64356733--64356857	22	5.4	22	65	20	76	25	28	12	34	1.91
64356992--64357069	23	3.2	25	63	17	65	29	29	11	29	1.92
64356688--64357086	47	8.5	47	94	0	645	25	27	13	33	1.93
64364258--64364322	24	2.7	25	71	7	62	13	1	12	72	1.20
64370148--64370181	16	2.1	16	100	0	68	61	11	0	26	1.30
64373318--64373468	40	3.8	40	91	2	225	23	25	29	21	1.99
64381324--64381466	40	3.6	40	89	1	207	24	25	27	22	2.00
64399361--64399401	20	2.0	20	100	0	82	39	34	4	21	1.75
64406126--64406322	40	5.0	39	85	4	218	34	14	26	25	1.94
64406141--64406328	79	2.4	79	85	1	243	34	14	26	25	1.94
64411384--64411481	34	2.9	34	87	3	135	64	9	6	20	1.44
64413718--64414079	48	7.6	47	74	10	252	28	18	28	24	1.98
64413800--64413876	25	3.2	25	65	20	63	29	15	28	25	1.96
64413715--64414079	96	3.8	94	78	7	328	28	18	28	24	1.98
64417223--64417340	40	3.0	40	93	0	191	30	27	18	22	1.98
64419387--64419507	43	2.8	43	79	12	133	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64421540--64421579	21	2.0	21	95	5	73	10	37	25	27	1.88
64427761--64428031	48	5.7	47	74	6	233	29	19	26	23	1.98
64427748--64428031	96	3.0	95	81	6	340	29	19	26	25	1.98
64428994--64429040	22	2.1	22	96	0	85	17	14	31	36	1.90
64433549--64433589	21	2.0	21	85	9	57	46	2	0	51	1.14
64436959--64437081	43	2.9	43	79	4	133	33	26	15	25	1.95
64437624--64437666	20	2.1	21	86	4	61	39	20	0	39	1.53
64444621--64444739	43	2.8	42	78	10	125	29	25	18	26	1.98
64447556--64447759	40	5.1	40	89	1	293	26	27	22	23	2.00
64455569--64455731	40	4.1	40	88	7	235	25	28	23	22	1.99
64462941--64463125	40	4.7	40	82	7	200	25	22	25	25	2.00
64462997--64463158	79	2.1	79	81	6	186	27	19	25	26	1.99
64466063--64466107	23	2.0	23	95	0	81	26	6	28	37	1.82
64483889--64483922	14	2.4	14	85	0	50	52	0	5	41	1.25
64490507--64490789	122	2.3	122	82	7	344	22	22	20	34	1.96
64494071--64494149	37	2.1	37	88	4	115	25	30	18	25	1.98
64494268--64494674	47	8.4	47	88	5	571	28	29	9	32	1.88
64494319--64494396	25	3.2	25	64	10	72	32	28	5	34	1.79
64494268--64494646	199	1.9	199	92	0	632	28	30	9	31	1.88
64497355--64497408	24	2.3	24	87	3	74	11	16	16	55	1.68
64497357--64497415	16	3.7	16	79	4	66	8	15	18	57	1.63
64499394--64499511	41	2.9	41	85	2	148	27	29	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64499744--64499807	27	2.4	27	86	0	83	26	18	17	37	1.93
64499786--64500311	27	19.7	27	80	5	557	31	9	19	40	1.83
64499786--64500311	80	6.6	80	83	2	628	31	9	19	40	1.83
64499786--64500311	53	9.8	54	84	1	616	31	9	19	40	1.83
64500619--64500682	28	2.3	28	91	0	101	26	37	17	18	1.93
64505207--64505273	27	2.5	27	90	4	100	32	10	13	43	1.78
64505225--64505694	53	8.8	54	81	4	485	31	9	19	39	1.84
64505225--64505685	80	5.8	80	83	4	488	31	9	19	39	1.84
64505225--64505694	133	3.5	133	84	3	581	31	9	19	39	1.84
64508339--64508379	18	2.3	19	79	12	50	26	7	4	60	1.43
64508437--64508478	15	2.9	15	78	3	50	23	9	2	64	1.35
64510359--64510619	40	6.6	40	81	5	280	24	26	23	25	2.00
64510359--64510619	80	3.3	80	83	3	312	24	26	23	25	2.00
64518533--64518756	40	5.6	40	86	3	308	23	28	24	24	2.00
64518497--64518756	80	3.3	80	85	4	330	23	27	23	25	2.00
64519352--64519438	38	2.3	38	100	0	174	31	26	14	27	1.95
64530770--64530940	93	1.8	93	94	0	306	28	28	21	21	1.98
64530762--64530937	46	3.8	46	78	12	207	29	28	20	21	1.98
64531363--64531419	29	1.9	29	85	3	78	26	24	8	40	1.84
64536745--64536862	43	2.8	42	74	6	112	28	15	21	34	1.94
64539499--64539538	21	2.0	20	85	5	53	22	20	40	17	1.92
64541694--64541740	20	2.3	20	92	0	76	34	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64541790--64541884	24	4.0	24	91	6	149	29	21	22	27	1.99
64541790--64541884	47	2.0	48	89	8	149	29	21	22	27	1.99
64547331--64547838	254	2.0	254	99	0	1000	25	19	25	29	1.99
64555617--64555789	46	3.7	46	80	13	219	21	21	28	28	1.98
64555614--64555784	93	1.8	93	96	0	315	21	21	29	28	1.98
64569888--64569974	34	2.6	34	85	7	106	25	24	26	24	2.00
64573082--64573232	43	3.5	42	75	8	135	33	24	13	27	1.94
64584549--64584913	47	7.8	46	71	12	208	22	29	21	27	1.99
64584690--64584913	94	2.4	94	82	1	279	22	29	21	25	1.99
64590701--64590750	24	2.1	24	92	0	82	18	32	28	22	1.97
64593927--64594484	49	11.6	49	94	1	902	33	8	29	28	1.86
64596578--64596944	94	3.9	94	77	10	322	22	29	20	27	1.98
64596580--64596939	47	7.7	47	70	13	181	22	29	20	27	1.98
64604838--64604881	23	1.9	23	81	9	54	31	2	20	45	1.64
64606477--64606516	21	2.0	21	95	5	73	10	40	30	20	1.85
64609731--64609900	45	3.9	43	73	11	143	24	16	28	30	1.96
64612956--64613005	20	2.3	22	80	13	59	22	0	8	70	1.13
64613931--64613981	24	2.1	24	82	7	59	43	7	5	43	1.57
64614604--64614701	9	10.3	9	73	12	72	52	2	3	42	1.28
64614607--64614670	30	2.1	31	85	8	87	46	1	3	48	1.27
64614720--64614771	9	5.7	9	72	4	50	67	1	0	30	1.02
64615264--64615322	28	2.1	29	83	3	75	66	1	5	27	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64615286--64615328	23	2.0	22	86	9	61	67	0	4	27	1.10
64615580--64615619	15	2.6	16	88	4	55	72	2	0	25	0.97
64615735--64616021	10	30.7	9	65	19	74	30	1	3	64	1.20
64615735--64616021	19	15.9	18	66	19	93	30	1	3	64	1.20
64615735--64616007	17	14.6	19	68	20	75	30	1	3	64	1.20
64615746--64615805	28	2.1	28	87	6	86	30	1	0	68	0.99
64615811--64615852	22	2.0	21	85	4	57	40	0	4	54	1.21
64617787--64617971	70	2.6	70	79	1	183	29	23	15	30	1.96
64628213--64628501	40	7.1	40	80	4	335	23	21	28	26	1.99
64628213--64628504	83	3.6	82	90	2	448	23	22	27	26	1.99
64628213--64628501	123	2.4	121	81	8	352	23	21	28	26	1.99
64637366--64637432	28	2.4	28	90	2	100	32	26	7	32	1.84
64637537--64637627	28	3.2	28	89	4	130	21	23	23	31	1.98
64637537--64637652	56	2.1	55	80	9	128	20	23	21	34	1.97
64638088--64638128	20	2.0	20	85	0	55	14	4	7	73	1.22
64639335--64639605	40	6.7	40	80	14	315	22	21	28	27	1.99
64639335--64639605	82	3.3	82	90	4	417	22	21	28	27	1.99
64639335--64639605	121	2.2	121	82	10	324	22	21	28	27	1.99
64649114--64649179	28	2.4	28	87	5	91	31	27	7	33	1.85
64649285--64649375	28	3.2	28	89	4	130	21	23	23	31	1.98
64649285--64649400	56	2.1	55	80	9	128	20	23	21	34	1.97
64649838--64649878	20	2.0	20	85	0	55	14	4	7	73	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64651087--64651394	40	7.6	40	81	7	361	22	22	28	26	1.99
64651091--64651394	123	2.5	121	83	9	361	22	22	28	26	1.99
64651087--64651394	83	3.8	82	88	6	450	22	22	28	26	1.99
64655372--64655416	23	2.0	23	100	0	90	31	13	20	35	1.91
64665451--64665599	49	3.0	48	79	6	172	30	27	16	25	1.97
64665463--64665599	50	2.8	51	82	4	174	30	27	16	25	1.96
64667722--64667786	15	4.4	15	80	16	73	64	13	13	7	1.48
64667722--64667790	30	2.3	31	80	14	83	62	17	13	7	1.52
64670795--64670970	50	3.5	49	82	7	185	28	28	18	24	1.98
64670795--64670981	101	1.9	99	85	4	259	28	29	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352