genome.fa.s11.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  118  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37843015--37843164	27	5.6	27	79	3	149	41	20	8	30	1.81
37843176--37843466	27	10.7	27	85	0	393	28	22	8	40	1.82
37843174--37843466	54	5.4	54	91	0	469	28	22	8	40	1.82
37843460--37843544	27	3.1	27	79	0	89	45	23	4	25	1.72
37843176--37843510	81	4.1	81	84	0	400	30	21	8	39	1.83
37843433--37843574	54	2.6	54	84	1	167	41	21	6	30	1.78
37843474--37843602	27	4.8	27	77	3	116	41	20	7	29	1.80
37843584--37843941	27	13.3	27	89	1	520	34	19	21	25	1.97
37844345--37844422	31	2.8	28	84	11	90	17	20	15	46	1.84
37844343--37844413	31	2.3	31	97	0	133	19	16	15	47	1.82
37844343--37844455	6	18.3	6	67	18	63	19	19	15	46	1.85
37844374--37844441	25	2.7	25	86	0	91	19	20	14	45	1.85
37853726--37853761	18	2.1	18	90	10	58	16	25	41	16	1.89
37855548--37855647	29	3.5	28	77	6	94	26	27	18	29	1.98
37858054--37858110	27	2.1	27	86	0	87	33	15	19	31	1.93
37860350--37860433	34	2.5	34	82	3	107	30	13	13	42	1.82
37861172--37861211	7	5.7	7	100	0	80	27	0	12	60	1.33
37861164--37861217	21	2.6	21	86	13	85	27	0	9	62	1.25
37861193--37861855	370	1.8	366	89	1	1056	35	9	14	39	1.79
37863293--37863391	38	2.6	38	81	0	126	38	4	10	47	1.56
37865276--37865380	41	2.6	41	86	1	158	34	19	19	27	1.95
37876302--37876361	30	2.0	30	90	0	93	38	8	25	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37877772--37877810	20	1.9	20	84	5	51	53	5	0	41	1.23
37883811--37883870	30	2.0	30	86	0	84	40	8	23	28	1.83
37889155--37889226	36	2.0	36	100	0	144	36	8	19	36	1.82
37889422--37889454	17	1.9	17	93	0	57	36	0	9	54	1.32
37889435--37889459	13	1.9	13	100	0	50	32	0	12	56	1.36
37892867--37892895	14	2.0	15	93	6	51	55	20	3	20	1.58
37897705--37897788	27	3.1	27	86	3	116	28	23	7	40	1.81
37897844--37897921	27	2.9	27	79	12	88	43	21	6	28	1.77
37898905--37898972	25	2.8	24	90	4	100	25	27	25	22	1.99
37899122--37899213	42	2.2	42	92	0	148	29	14	21	34	1.93
37904124--37904152	14	2.0	15	93	6	51	55	20	3	20	1.58
37904779--37904812	16	2.1	16	100	0	68	38	20	5	35	1.77
37907946--37907976	16	1.9	16	93	0	53	35	22	0	41	1.54
37907943--37907982	20	2.0	20	85	0	53	37	22	0	40	1.54
37908055--37908099	23	1.9	24	90	4	74	22	24	11	42	1.86
37908207--37908422	55	4.0	54	80	6	249	22	25	16	35	1.95
37908215--37908415	108	1.8	110	88	4	309	23	25	17	33	1.96
37917421--37917603	79	2.3	80	83	7	221	26	27	21	24	1.99
37917419--37917603	40	4.7	40	80	7	216	26	28	21	23	1.99
37927307--37927474	49	3.5	49	75	14	188	22	26	20	30	1.98
37927304--37927518	94	2.3	94	95	1	380	22	27	20	29	1.99
37927304--37927669	94	3.9	95	83	7	378	22	28	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37931551--37931591	21	1.9	22	90	5	66	29	21	0	48	1.50
37949282--37949419	40	3.5	40	86	3	181	26	28	21	22	1.99
37956710--37956927	40	5.5	40	86	5	273	25	28	23	22	1.99
37964657--37964952	27	11.0	27	83	3	242	37	20	11	31	1.88
37966704--37966970	132	2.0	132	92	0	444	34	17	9	38	1.82
37968654--37968732	25	3.2	25	85	7	115	31	21	16	30	1.95
37968724--37968781	25	2.3	25	88	5	82	32	27	13	25	1.94
37970362--37970537	51	3.5	48	82	10	187	26	14	31	28	1.95
37970362--37970537	52	3.5	51	82	7	211	26	14	31	28	1.95
37974034--37974191	43	3.7	43	70	14	110	25	17	23	33	1.96
37977487--37977665	85	2.1	85	97	0	340	37	8	27	26	1.85
37979537--37979988	47	9.5	47	78	10	403	31	10	29	27	1.91
37979552--37979988	100	4.6	98	91	5	700	31	11	29	27	1.91
37979552--37979988	195	2.3	195	91	7	720	31	11	29	27	1.91
37979962--37980052	46	2.0	46	84	0	119	32	9	31	25	1.89
37979552--37980037	195	2.5	192	87	8	618	32	11	29	27	1.91
37980197--37980305	37	2.9	37	93	0	173	24	19	29	26	1.98
37981556--37981827	40	6.8	40	92	0	436	23	22	29	25	1.99
37983577--37983707	40	3.1	41	62	21	99	41	6	23	28	1.80
37983538--37983716	85	2.1	85	97	0	340	37	8	27	26	1.85
37985577--37986199	98	6.3	98	90	4	812	31	12	28	26	1.93
37985577--37986199	151	4.2	143	87	5	766	31	12	28	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37985584--37986199	198	3.1	198	88	5	838	31	12	28	26	1.93
37986173--37986263	46	2.0	46	84	0	119	32	9	31	25	1.89
37985577--37986248	349	1.9	346	91	4	1108	31	12	28	26	1.93
37986408--37986516	37	2.9	37	91	0	173	23	18	30	27	1.98
37995432--37995481	25	2.0	25	96	0	91	30	20	22	28	1.98
37995438--37995531	25	3.8	24	74	16	75	30	23	19	26	1.98
37997766--37997841	37	2.1	37	97	0	143	35	9	11	43	1.73
38002556--38002632	37	2.1	37	95	0	136	23	14	27	35	1.93
38009926--38009995	34	2.1	33	84	7	88	27	7	24	41	1.81
38011554--38011729	27	6.5	27	84	3	201	30	27	14	27	1.95
38011573--38011728	82	1.9	81	88	3	233	29	28	15	26	1.96
38019723--38019900	27	6.6	27	84	3	205	29	28	15	26	1.96
38019744--38019899	82	1.9	81	88	3	233	29	28	15	26	1.96
38025106--38025342	50	4.7	51	80	2	217	26	16	26	29	1.97
38025106--38025384	50	5.5	50	80	3	159	26	16	27	29	1.97
38031169--38031360	38	5.0	39	87	6	207	23	29	24	22	1.99
38031201--38031360	38	4.3	38	91	2	270	23	30	23	23	1.99
38031201--38031360	75	2.1	76	94	2	279	23	30	23	23	1.99
38034489--38034604	51	2.3	51	83	0	133	29	17	25	28	1.97
38043524--38043706	79	2.3	80	83	9	223	25	27	22	24	2.00
38043522--38043706	40	4.7	40	79	10	200	25	27	22	24	2.00
38051678--38051783	40	2.7	40	86	2	151	25	28	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38053174--38053214	21	1.9	22	85	5	57	43	9	21	24	1.83
38056775--38056838	30	2.2	30	94	2	112	31	6	14	48	1.68
38062882--38062946	28	2.3	28	91	0	103	32	27	7	32	1.85
38063052--38063114	28	2.2	29	86	8	85	22	20	23	33	1.97
38063062--38063125	28	2.2	28	83	2	74	25	23	18	32	1.97
38063568--38063606	19	2.1	19	90	0	60	17	5	5	71	1.23
38064555--38064633	37	2.1	37	90	0	122	25	31	18	24	1.98
38064752--38065146	192	2.1	190	91	2	643	29	29	8	32	1.86
38064752--38065146	47	8.3	47	92	2	639	29	29	8	32	1.86
38068635--38068943	40	7.8	40	90	2	451	27	28	20	23	1.99
38068639--38068943	159	1.9	159	89	2	470	27	28	20	22	1.99
38070158--38070236	37	2.1	37	90	0	122	25	31	18	24	1.98
38070355--38070749	192	2.1	190	92	1	659	29	29	8	32	1.87
38070355--38070749	47	8.3	47	93	2	655	29	29	8	32	1.87
38073507--38073540	10	3.3	10	84	8	50	29	8	8	52	1.62
38080039--38080103	28	2.3	28	89	0	94	32	26	7	33	1.85
38080209--38080271	28	2.2	29	88	8	94	22	22	23	31	1.98
38080219--38080282	28	2.2	28	86	2	83	25	25	18	31	1.98
38080725--38080763	19	2.1	19	85	0	51	15	5	7	71	1.26
38083418--38083533	13	8.7	13	67	16	67	43	2	19	34	1.65
38083413--38083512	40	2.5	39	88	3	146	41	3	19	37	1.67
38083478--38083533	27	2.1	27	86	0	76	46	0	21	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38094330--38094497	40	4.2	40	80	8	191	28	27	20	23	1.99
38094321--38094497	80	2.2	79	84	6	225	27	27	20	24	1.99
38098270--38098300	2	15.5	2	100	0	62	51	48	0	0	1.00
38103371--38103531	53	3.0	53	84	5	198	22	25	18	34	1.96
38103507--38103625	47	2.5	46	93	5	202	24	25	14	36	1.93
38103762--38103848	44	2.0	44	81	4	104	25	25	12	36	1.91
38109318--38109472	42	3.7	42	81	5	152	29	26	16	27	1.97
38113295--38113486	99	1.9	101	87	2	280	26	17	26	30	1.97
38118072--38118181	40	2.8	40	86	6	152	26	28	21	23	1.99
38123497--38123662	42	3.9	41	73	12	131	30	19	15	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352