Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  346  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110636401--110636524
63
2.0
63
88
4
189
32
12
15
40
1.84
110648641--110648669
3
9.7
3
100
0
58
31
0
0
68
0.89
110648674--110648856
74
2.5
74
97
0
341
28
6
23
41
1.79
110651104--110651137
18
1.9
18
88
5
52
20
2
2
73
1.09
110657567--110657792
113
2.0
113
94
0
398
30
11
20
36
1.89
110662223--110662250
3
9.3
3
100
0
56
67
0
0
32
0.91
110667674--110667711
20
2.0
20
89
5
60
36
0
0
63
0.95
110669645--110669688
21
2.2
20
83
4
52
47
0
4
47
1.22
110672898--110672928
7
4.4
7
91
0
53
3
25
0
70
1.02
110680340--110680380
21
2.0
21
81
18
50
31
19
26
21
1.97
110684219--110684280
29
2.1
30
90
3
99
51
6
6
35
1.53
110684269--110684359
24
3.8
22
73
18
58
54
5
9
29
1.55
110684460--110684558
14
7.0
14
71
21
64
61
2
2
34
1.19
110684462--110684517
21
2.7
21
89
8
80
58
3
1
35
1.26
110684489--110684549
17
3.3
18
82
11
70
60
1
1
36
1.16
110684512--110684610
20
4.9
20
70
23
66
60
2
4
33
1.27
110684656--110684961
3
101.7
3
65
20
74
59
3
5
31
1.38
110684798--110684901
36
3.0
35
77
12
90
57
1
6
33
1.36
110684917--110684950
14
2.4
14
90
0
50
67
0
5
26
1.13
110685294--110685373
36
2.3
34
77
16
83
31
22
23
22
1.99
110687185--110687502
158
2.0
158
94
0
555
33
11
23
30
1.91
110688672--110688735
30
2.1
30
94
0
110
56
7
23
12
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110695768--110695986
47
4.7
47
90
0
330
27
28
7
36
1.84
110702644--110702673
4
7.5
4
100
0
60
50
26
0
23
1.50
110707703--110707743
21
1.9
22
85
5
57
19
7
0
73
1.07
110716197--110716237
21
2.0
20
85
4
55
34
2
0
63
1.08
110716226--110716269
18
2.3
19
84
7
54
38
9
2
50
1.47
110717416--110717557
20
7.0
20
66
15
85
57
6
16
19
1.60
110717938--110717974
19
1.9
19
88
0
56
64
5
16
13
1.45
110719723--110719801
31
2.6
29
84
15
99
32
11
13
41
1.81
110721918--110721988
30
2.3
30
80
2
79
46
9
1
42
1.46
110723158--110723191
17
1.9
18
88
5
52
64
14
0
20
1.28
110726913--110726952
19
2.1
19
95
0
71
42
2
5
50
1.37
110732357--110732409
25
2.2
23
83
12
63
58
1
11
28
1.43
110736228--110736260
17
1.9
17
100
0
66
24
6
9
60
1.49
110741025--110741158
60
2.2
59
81
1
142
36
5
12
45
1.65
110761565--110761625
31
2.0
31
83
6
79
32
8
19
39
1.81
110763299--110763339
17
2.2
20
87
12
61
68
9
0
21
1.18
110763397--110763459
30
2.1
30
93
0
108
57
14
3
25
1.52
110765323--110765348
3
8.7
3
100
0
52
30
0
34
34
1.58
110767426--110767453
3
9.3
3
100
0
56
35
0
0
64
0.94
110779632--110779675
20
2.2
19
100
0
70
34
9
11
45
1.72
110780951--110780990
18
2.2
18
86
0
53
30
2
15
52
1.55
110781252--110781276
13
1.9
13
100
0
50
64
0
4
32
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110783000--110783059
21
3.3
19
74
17
56
28
0
1
70
0.97
110783000--110783091
37
2.4
38
79
13
93
26
0
6
67
1.15
110783002--110783091
19
4.8
19
72
6
51
25
0
6
67
1.14
110783002--110783092
38
2.4
38
78
10
98
25
0
6
68
1.14
110783429--110783460
11
3.1
11
86
13
50
53
0
0
46
1.00
110789055--110789088
2
17.0
2
100
0
68
50
0
50
0
1.00
110791333--110791393
32
1.9
32
83
6
79
21
11
6
60
1.53
110791792--110792475
6
116.5
6
80
3
570
39
0
60
0
1.02
110791792--110792475
8
87.4
8
79
4
570
39
0
60
0
1.02
110795306--110795335
4
7.5
4
100
0
60
50
0
0
50
1.00
110795668--110795705
20
1.9
20
100
0
76
28
10
0
60
1.30
110796302--110796339
12
2.9
13
84
7
51
60
0
0
39
0.97
110797378--110797547
80
2.0
82
88
11
249
40
5
17
36
1.74
110800049--110800079
16
1.9
16
93
0
53
87
0
12
0
0.55
110804237--110804294
29
2.0
29
100
0
116
20
37
13
27
1.91
110808214--110808264
24
2.1
25
92
3
86
41
17
15
25
1.89
110812533--110812568
5
7.4
5
93
6
65
41
0
0
58
0.98
110816626--110816650
8
3.1
8
100
0
50
36
0
0
64
0.94
110816673--110816703
5
6.4
5
92
7
55
41
0
0
58
0.98
110816711--110816750
21
2.0
20
90
5
62
65
7
20
7
1.43
110821458--110821485
13
2.2
13
100
0
56
53
14
0
32
1.41
110821482--110821529
17
2.8
17
80
3
51
52
2
4
41
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110825090--110825428
35
9.7
34
86
5
401
30
25
14
29
1.94
110825092--110825428
105
3.2
105
87
0
478
30
25
13
29
1.94
110830089--110830124
16
2.2
17
90
5
56
36
2
22
38
1.69
110830973--110830997
5
5.0
5
100
0
50
20
0
0
80
0.72
110831821--110831933
39
2.9
38
77
5
109
30
26
18
24
1.98
110842667--110842697
4
7.8
4
100
0
62
25
0
25
48
1.52
110847811--110847840
12
2.6
12
94
5
53
70
0
0
30
0.88
110848537--110848574
12
3.0
13
88
3
51
50
0
0
50
1.00
110849206--110849240
17
2.0
18
88
5
54
62
2
2
31
1.24
110850506--110850536
16
1.9
16
100
0
62
48
0
0
51
1.00
110851688--110851712
7
3.6
7
100
0
50
88
0
12
0
0.53
110852084--110852113
6
5.0
6
95
0
51
16
0
70
13
1.18
110852533--110852589
26
2.2
26
83
0
69
59
1
7
31
1.34
110853342--110853461
52
2.3
52
89
0
186
35
18
2
43
1.64
110857014--110857054
22
1.9
21
85
14
57
31
12
17
39
1.86
110860786--110860813
3
9.3
3
100
0
56
0
35
64
0
0.94
110861683--110861717
6
5.8
6
100
0
70
14
68
0
17
1.21
110880523--110880547
9
2.8
9
100
0
50
24
44
0
32
1.54
110880609--110880649
21
2.0
21
90
0
64
19
29
21
29
1.98
110888138--110888203
30
2.2
30
83
5
80
51
6
0
42
1.26
110889039--110889378
110
3.0
112
90
6
508
37
16
13
32
1.88
110889516--110889845
115
2.9
115
89
5
510
31
14
16
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110891829--110891873
22
2.0
22
83
8
56
51
0
0
48
1.00
110896180--110896224
23
1.9
23
86
13
65
35
0
0
64
0.94
110904351--110904391
21
2.0
21
90
0
64
19
29
21
29
1.98
110912922--110912946
9
2.8
9
100
0
50
20
24
24
32
1.98
110913233--110913364
66
2.0
65
86
1
183
32
17
27
22
1.96
110915667--110915711
4
11.0
4
80
4
54
26
2
2
68
1.12
110924623--110924653
14
2.2
14
94
0
53
19
3
12
64
1.41
110932194--110932227
3
11.7
3
93
6
61
29
0
0
70
0.87
110938376--110938421
19
2.5
18
82
3
56
63
0
8
28
1.24
110938366--110938419
28
1.9
28
84
0
72
62
1
9
25
1.35
110938385--110938420
18
1.9
19
88
5
56
63
0
11
25
1.27
110938911--110938960
24
2.1
25
82
10
61
56
6
2
36
1.36
110940420--110940451
16
2.0
16
100
0
64
50
12
0
37
1.41
110958443--110958622
90
2.0
90
100
0
360
33
4
15
46
1.66
110960109--110960143
18
1.9
18
88
0
52
62
0
22
14
1.31
110961740--110961779
21
2.0
21
90
5
64
77
10
7
5
1.11
110963261--110963295
18
1.9
18
88
0
52
62
0
22
14
1.31
110976257--110976289
11
3.1
11
95
4
59
69
0
9
21
1.15
110977842--110977906
32
2.0
32
100
0
130
30
6
24
38
1.80
110979388--110979440
26
2.0
26
82
7
63
37
20
15
26
1.92
110985039--110985104
32
2.1
32
97
0
123
37
10
28
22
1.88
110985898--110985962
32
2.0
32
100
0
130
30
6
24
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110987446--110987498
26
2.0
26
85
7
72
37
22
15
24
1.92
110990296--110990487
40
4.8
40
80
7
187
25
22
27
25
2.00
110990349--110990513
79
2.1
79
82
6
192
26
21
26
25
1.99
110992808--110992857
22
2.1
23
82
10
57
48
4
0
48
1.20
110993631--110993683
26
2.0
27
88
3
81
49
1
7
41
1.42
110995546--110995702
9
16.8
9
67
24
60
61
1
4
32
1.27
110995556--110995612
19
2.9
19
75
14
55
61
0
1
36
1.07
110995576--110995704
56
2.3
58
76
11
142
60
2
3
33
1.28
110996156--110996198
15
3.1
14
78
15
54
44
0
11
44
1.40
110996196--110996220
13
1.9
13
100
0
50
40
0
4
56
1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352