genome.fa.s11.2.7.7.80.10.50.1000.329.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  329  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106273866--106273961	30	3.1	32	82	7	110	33	2	3	61	1.23
106273824--106273916	10	9.5	10	67	17	61	30	3	2	64	1.21
106273905--106273944	21	1.9	21	85	10	55	40	0	0	60	0.97
106273966--106274013	21	2.2	23	85	7	64	31	4	2	62	1.26
106276029--106276080	25	2.1	25	92	0	86	19	28	11	40	1.86
106278464--106278643	51	3.5	51	80	3	193	36	18	26	18	1.94
106278410--106278684	102	2.7	101	73	8	254	37	19	24	19	1.94
106280135--106280203	17	4.0	17	92	3	120	36	13	11	39	1.80
106280134--106280211	35	2.2	36	95	4	149	37	14	10	38	1.80
106280624--106281427	288	2.8	286	88	2	1141	30	20	16	32	1.95
106281316--106282092	119	6.6	119	93	1	1262	31	20	16	31	1.94
106282997--106283041	10	4.5	10	83	8	56	2	11	0	86	0.65
106282997--106283041	19	2.3	20	81	7	58	2	11	0	86	0.65
106282997--106283041	12	3.7	12	82	5	54	2	11	0	86	0.65
106288048--106288101	27	2.0	27	96	0	99	20	25	12	40	1.88
106291463--106291503	11	3.9	10	84	9	55	85	0	12	2	0.70
106291463--106291506	12	3.6	12	81	6	52	86	0	11	2	0.66
106292411--106293193	119	6.6	119	93	0	1280	31	16	20	31	1.94
106292411--106293193	237	3.3	238	93	0	1280	31	16	20	31	1.94
106293079--106293885	288	2.8	287	87	2	1138	32	16	20	30	1.95
106294308--106294376	17	4.0	17	92	3	120	39	11	13	36	1.80
106294300--106294377	35	2.2	36	95	4	149	38	10	14	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106295864--106296102	51	4.7	50	76	8	187	19	25	18	35	1.95
106298431--106298482	25	2.1	25	92	0	86	40	11	28	19	1.86
106302603--106302710	29	3.7	29	83	0	126	20	24	27	27	1.99
106302603--106302723	58	2.1	58	85	0	161	23	23	26	26	2.00
106302982--106303027	23	2.0	23	82	0	56	32	13	28	26	1.93
106303940--106303984	23	2.0	23	81	0	54	33	15	28	22	1.95
106306762--106306875	31	3.8	30	87	4	158	23	28	17	30	1.97
106307190--106307276	20	4.3	20	86	2	122	33	20	11	34	1.89
106307190--106307245	11	5.5	11	71	16	57	30	19	14	35	1.91
106307197--106307266	11	7.0	10	71	18	56	34	21	11	32	1.89
106307313--106307360	25	1.9	25	86	0	69	27	14	22	35	1.93
106312373--106312412	1	40.0	1	84	0	53	92	2	2	2	0.50
106315211--106315246	17	2.2	16	90	5	54	30	0	0	69	0.89
106317094--106317201	29	3.7	29	83	0	126	20	24	27	27	1.99
106325216--106325381	18	8.7	18	67	18	61	32	3	2	62	1.24
106325280--106325379	16	6.1	16	70	20	73	31	2	3	64	1.20
106325395--106325442	21	2.2	23	85	7	64	31	4	2	62	1.26
106325642--106325712	31	2.5	30	77	18	71	30	5	1	61	1.27
106327464--106327515	25	2.1	25	92	0	86	19	28	11	40	1.86
106329897--106330063	51	3.3	50	83	4	192	35	20	25	18	1.95
106329842--106330115	102	2.7	100	73	9	252	37	19	23	19	1.94
106331568--106331636	17	4.0	17	92	3	120	36	13	11	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106331567--106331644	35	2.2	36	95	4	149	37	14	10	38	1.80
106332058--106332864	288	2.8	286	88	2	1152	30	20	16	32	1.95
106332750--106333532	119	6.6	119	93	0	1289	31	20	16	31	1.94
106334446--106334480	10	3.4	10	84	7	52	0	14	0	85	0.59
106334437--106334480	13	3.4	12	81	12	52	2	13	0	84	0.73
106339482--106339535	27	2.0	27	96	0	99	20	25	12	40	1.88
106340561--106340694	17	7.6	17	82	5	160	34	13	12	39	1.83
106340561--106340702	35	4.0	35	89	2	212	34	14	11	39	1.82
106345883--106345945	28	2.4	25	81	7	72	55	7	3	33	1.45
106346316--106346369	20	2.6	21	91	2	83	59	11	0	29	1.32
106346273--106346446	25	7.5	24	68	21	88	60	5	0	33	1.23
106346339--106346444	10	11.3	9	73	18	76	61	2	0	34	1.17
106346339--106346448	14	7.7	13	74	18	62	60	2	0	35	1.17
106346337--106346423	5	18.0	5	72	13	67	60	3	0	35	1.13
106348061--106348507	87	5.1	86	65	20	228	28	20	17	34	1.95
106348071--106348682	174	3.5	174	92	2	942	28	20	18	33	1.96
106348197--106348677	87	5.5	87	67	18	300	28	20	18	33	1.96
106349667--106349736	1	70.0	1	71	0	50	1	12	0	85	0.66
106349667--106349736	11	6.3	11	80	9	88	1	12	0	85	0.66
106349667--106349736	19	3.8	18	82	17	90	1	12	0	85	0.66
106349667--106349736	26	2.7	24	83	16	86	1	12	0	85	0.66
106349667--106349736	23	3.1	21	81	18	88	1	12	0	85	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106353455--106353626	82	2.1	83	94	1	301	19	23	15	41	1.89
106357035--106357144	5	23.0	5	71	17	74	61	2	0	35	1.10
106357014--106357067	20	2.6	21	91	2	83	59	11	0	29	1.32
106357035--106357181	25	5.9	24	68	23	90	59	4	0	36	1.16
106357089--106357142	12	4.0	14	75	22	53	66	0	0	33	0.92
106357013--106357142	20	6.6	20	77	13	78	61	5	0	33	1.19
106357093--106357182	35	2.6	36	84	7	114	61	3	0	35	1.13
106358998--106359030	5	6.6	5	100	0	66	18	60	21	0	1.36
106359383--106359415	15	2.4	14	85	14	50	3	33	0	63	1.10
106359501--106360018	258	2.0	258	96	0	955	44	11	9	35	1.72
106369724--106369772	20	2.5	20	90	6	73	34	2	0	63	1.06
106369734--106369789	27	2.0	29	86	6	80	35	3	1	58	1.26
106369810--106369858	12	3.8	14	76	13	52	34	4	0	61	1.15
106369810--106369858	19	2.6	19	73	0	53	34	4	0	61	1.15
106369966--106370005	13	3.0	13	85	3	53	40	10	0	50	1.36
106369961--106370003	13	3.2	13	83	3	50	37	9	2	51	1.47
106377447--106377658	40	5.3	40	82	3	232	25	26	22	25	2.00
106385401--106385617	40	5.4	40	81	3	215	25	27	21	25	2.00
106387642--106387679	19	2.0	19	94	0	67	13	26	13	47	1.79
106387686--106388028	45	7.4	50	72	16	256	27	18	19	34	1.95
106387708--106388112	45	9.0	45	72	11	247	27	20	18	34	1.96
106387670--106388075	137	3.0	137	92	0	643	27	19	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106387752--106387931	92	1.9	97	80	7	219	26	20	18	34	1.96
106387859--106388027	92	1.9	91	83	7	222	26	20	20	32	1.97
106388093--106388564	68	6.9	68	88	0	674	28	22	23	26	1.99
106388579--106388746	88	1.9	88	81	4	205	22	17	22	38	1.94
106390840--106390980	50	2.8	50	77	6	135	31	9	19	39	1.84
106391267--106391308	20	2.1	21	86	8	61	23	0	9	66	1.21
106398383--106398575	50	3.8	51	73	8	171	29	11	20	38	1.87
106398410--106398599	100	1.9	100	79	6	215	30	11	19	39	1.86
106413563--106413636	13	5.5	13	75	19	55	33	5	0	60	1.19
106413525--106413601	27	2.8	26	73	11	75	33	5	1	59	1.28
106413525--106413617	27	3.4	26	72	10	71	32	7	1	59	1.33
106413563--106413634	28	2.6	28	76	8	67	33	5	0	61	1.19
106413709--106413774	5	13.4	5	70	20	50	31	4	0	63	1.14
106413713--106413778	14	4.6	13	72	18	51	31	4	0	63	1.14
106417239--106417281	21	2.2	20	83	8	52	30	0	0	69	0.88
106418066--106418245	74	2.4	74	95	0	315	37	13	17	31	1.89
106425254--106425373	3	39.0	3	72	11	82	61	4	6	27	1.39
106425581--106425647	30	2.2	30	89	0	107	26	47	5	19	1.72
106426080--106426125	25	1.9	24	91	8	76	34	2	0	63	1.07
106426145--106426214	25	2.8	26	75	10	76	34	8	2	54	1.46
106426228--106426294	22	2.9	22	78	10	71	28	5	5	59	1.45
106426234--106426296	25	2.5	24	84	7	72	28	4	6	60	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106426359--106426414	25	2.3	24	79	14	62	37	16	3	42	1.65
106431244--106431308	32	2.0	32	100	0	130	47	9	27	15	1.76
106438954--106438987	15	2.3	15	89	0	50	14	11	5	67	1.39
106439041--106439087	13	3.5	13	85	5	67	19	8	2	70	1.24
106439043--106439087	14	3.3	14	84	6	65	17	8	2	71	1.23
106438883--106439074	87	2.2	87	78	9	205	24	17	17	41	1.90
106438954--106439266	100	3.1	100	84	4	364	24	16	16	42	1.88
106439277--106439839	73	7.6	73	83	4	673	31	15	19	32	1.93
106439257--106439839	148	3.9	147	85	4	708	31	15	19	33	1.92
106439277--106439839	223	2.5	223	90	2	873	31	15	19	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352