genome.fa.s11.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  212  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69790816--69790931	43	2.7	42	78	6	135	28	24	16	31	1.96
69794144--69794176	11	2.8	12	90	9	59	69	6	6	18	1.30
69796270--69796352	20	4.2	18	75	14	67	78	2	15	3	1.00
69799398--69799456	14	4.2	14	78	8	57	20	33	6	38	1.79
69804768--69804901	56	2.4	56	96	0	241	33	23	13	29	1.93
69805725--69805768	21	2.1	21	100	0	88	13	9	4	72	1.24
69807784--69807849	33	2.0	33	88	5	98	30	22	18	28	1.97
69808031--69808112	27	3.0	27	81	13	89	35	19	21	23	1.96
69808253--69808560	27	11.4	27	80	2	323	24	21	19	35	1.96
69810338--69810505	47	3.6	45	78	13	187	25	20	30	24	1.99
69810338--69810599	94	2.8	92	82	5	312	25	18	29	25	1.98
69810385--69810546	47	3.5	43	75	14	146	23	17	32	27	1.97
69822126--69822310	40	4.7	40	91	1	273	25	27	23	23	2.00
69822126--69822310	79	2.3	80	88	0	273	25	27	23	23	2.00
69822103--69822344	40	6.1	39	81	8	242	26	26	22	24	2.00
69826059--69826120	27	2.3	27	82	0	70	32	20	24	22	1.98
69826269--69826574	27	11.4	27	77	1	265	24	21	17	36	1.95
69826260--69826575	134	2.4	134	80	3	323	25	21	17	36	1.95
69841363--69841431	33	2.1	34	81	8	79	27	23	21	27	1.99
69842351--69842421	25	2.8	25	78	4	81	36	18	21	23	1.95
69844874--69845057	80	2.3	81	86	3	257	25	27	21	26	1.99
69844855--69845059	40	5.1	40	80	7	211	24	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69853065--69853246	78	2.3	81	87	5	268	24	27	21	25	2.00
69853046--69853246	40	5.1	38	82	8	217	24	27	21	26	1.99
69853813--69853860	22	2.2	22	79	17	55	39	18	6	35	1.76
69863641--69863774	39	3.4	39	78	3	108	33	26	18	20	1.96
69863675--69863778	39	2.7	39	80	0	118	31	25	21	21	1.98
69863689--69864346	39	16.7	39	84	2	753	27	27	22	21	1.99
69863689--69864346	118	5.6	118	85	3	831	27	27	22	21	1.99
69863722--69864346	197	3.2	198	85	3	834	27	27	22	21	1.99
69878251--69878374	38	3.2	38	84	6	142	22	20	26	30	1.98
69880924--69881298	48	7.8	48	77	6	332	28	17	27	27	1.97
69880924--69881302	96	3.9	97	87	4	536	28	17	27	26	1.98
69880924--69881305	144	2.6	142	80	4	417	28	17	27	26	1.98
69884300--69884338	21	1.9	20	89	5	60	10	41	30	17	1.83
69889471--69889576	47	2.2	47	88	1	149	35	25	13	25	1.92
69889523--69889684	54	3.0	53	81	5	184	33	26	14	25	1.94
69891975--69892019	21	2.1	21	95	0	81	33	31	0	35	1.58
69894332--69894391	26	2.3	27	85	11	88	38	15	16	30	1.89
69894332--69894400	26	2.6	26	80	15	79	39	15	15	28	1.89
69894554--69894807	127	2.0	127	86	1	357	20	21	23	35	1.96
69895935--69896013	27	2.9	27	84	0	113	32	17	17	31	1.94
69896405--69896452	22	2.2	22	88	7	71	16	25	20	37	1.93
69900446--69900499	22	2.4	22	90	3	81	25	25	14	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69902414--69902616	40	5.1	40	90	2	302	22	23	28	25	2.00
69907852--69907921	28	2.5	28	88	4	97	28	12	25	32	1.93
69915732--69915801	28	2.5	28	86	6	97	28	14	25	31	1.95
69919592--69920897	654	2.0	654	91	0	2130	26	14	24	33	1.95
69922888--69923112	49	4.5	49	83	3	288	30	26	18	25	1.98
69922888--69923119	100	2.3	98	85	2	311	29	26	18	25	1.98
69923761--69923816	29	2.0	28	82	10	69	28	28	7	35	1.84
69925871--69925903	15	2.2	15	94	0	57	57	12	12	18	1.64
69927747--69927920	93	1.9	93	86	0	249	23	18	27	30	1.98
69927756--69927925	46	3.7	46	73	13	159	24	18	26	30	1.98
69931470--69931714	49	4.9	49	82	3	301	29	26	17	25	1.98
69932161--69932228	33	2.1	33	100	0	136	51	8	8	30	1.63
69932395--69932454	30	2.0	30	83	6	77	28	26	6	38	1.81
69932878--69932913	17	2.1	17	89	0	54	22	11	8	58	1.59
69939670--69939784	29	4.0	28	86	2	140	26	14	29	28	1.95
69948206--69948356	39	3.9	39	92	0	257	27	21	24	26	2.00
69950012--69950141	42	3.1	42	81	6	136	31	23	13	31	1.93
69950024--69950141	43	2.8	42	83	6	139	31	22	13	32	1.93
69954982--69955029	15	2.9	15	75	21	51	20	2	4	72	1.11
69960751--69960935	40	4.7	40	76	13	168	26	25	21	25	2.00
69963845--69963886	5	8.2	5	86	5	57	4	19	2	73	1.12
69963845--69963886	16	2.7	15	82	7	57	4	19	2	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69967042--69967098	23	2.5	23	85	0	69	45	28	8	17	1.78
69969070--69969094	13	1.9	13	100	0	50	12	40	32	16	1.84
69972733--69972801	28	2.5	28	90	4	104	33	26	13	27	1.93
69974500--69974683	40	4.6	41	82	11	199	25	22	27	25	2.00
69974500--69974683	79	2.3	80	83	8	216	25	22	27	25	2.00
69974552--69974716	79	2.1	79	82	8	194	26	21	27	24	1.99
69985093--69985317	40	5.7	40	82	6	233	25	28	21	25	1.99
69985249--69985326	40	1.9	41	82	10	97	26	28	20	24	1.99
69987798--69987867	28	2.5	28	88	4	97	34	27	11	27	1.91
69999066--69999152	27	3.3	26	77	4	93	37	21	21	18	1.94
69999566--69999601	16	2.2	16	90	0	54	5	30	25	38	1.78
70006823--70006909	27	3.3	26	79	4	84	35	19	22	21	1.96
70027109--70027157	23	2.3	22	82	10	66	57	12	0	30	1.36
70027161--70027199	19	2.1	18	85	4	51	74	5	0	20	1.01
70028680--70028753	36	2.1	36	100	0	148	36	2	8	52	1.45
70032579--70032706	28	4.5	28	86	2	166	28	13	25	32	1.93
70032579--70032706	57	2.2	57	87	2	177	28	13	25	32	1.93
70037760--70038099	27	12.7	27	78	8	273	30	11	22	35	1.89
70038432--70038507	28	2.7	28	93	0	125	28	31	15	23	1.96
70068287--70068365	37	2.1	37	88	0	113	25	30	18	25	1.98
70068528--70068909	47	8.1	47	95	0	667	28	30	9	31	1.89
70072140--70072459	46	6.8	48	77	10	250	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70072285--70072458	49	3.6	47	80	8	172	25	19	29	25	1.98
70072139--70072458	96	3.4	95	73	14	272	26	19	29	24	1.98
70087079--70087132	24	2.2	24	84	12	67	29	37	16	16	1.91
70089443--70089614	93	1.8	93	96	0	317	27	29	21	20	1.98
70089436--70089611	46	3.8	46	79	12	216	28	29	21	20	1.98
70096972--70097143	93	1.8	93	92	2	292	27	29	21	21	1.99
70096965--70097140	46	3.8	46	77	14	191	28	29	21	21	1.98
70097016--70097159	46	3.1	44	75	15	132	29	29	20	21	1.98
70104686--70104739	24	2.2	24	84	12	67	29	37	16	16	1.91
70107027--70107075	8	5.9	8	90	9	80	36	0	0	63	0.95
70107031--70107079	5	10.0	5	75	20	50	36	0	0	63	0.95
70107031--70107079	13	3.8	13	84	10	73	36	0	0	63	0.95
70107156--70107197	12	3.4	12	84	12	50	78	0	21	0	0.75
70111685--70111833	40	3.8	40	83	4	160	26	28	20	24	1.99
70111704--70111888	40	4.6	39	81	6	194	25	28	22	23	1.99
70111704--70111888	79	2.3	80	80	8	207	25	28	22	23	1.99
70128035--70128207	46	3.7	46	79	14	212	21	20	28	29	1.98
70128032--70128202	93	1.8	93	94	2	308	21	21	29	28	1.98
70135614--70135738	46	2.7	46	93	0	205	20	23	28	28	1.98
70139068--70139278	27	7.8	26	84	6	160	40	18	9	32	1.82
70139068--70139251	54	3.4	54	80	11	218	40	18	9	32	1.82
70139095--70139278	80	2.3	79	83	8	212	39	17	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70139067--70139306	107	2.2	106	82	10	276	40	17	9	31	1.82
70139122--70139305	27	6.9	26	84	8	185	40	17	9	32	1.82
70139083--70139306	54	4.2	52	80	11	190	40	19	9	31	1.83
70139207--70139319	54	2.1	54	81	6	131	43	15	9	30	1.80
70142052--70142318	56	4.8	56	90	0	408	28	16	22	32	1.95
70147913--70147965	24	2.2	24	83	12	65	30	37	15	16	1.90
70150536--70150696	27	6.0	27	81	9	186	42	21	8	28	1.81
70150538--70150696	54	2.9	53	87	5	212	42	21	7	28	1.80
70150536--70150711	81	2.2	80	84	6	221	42	19	9	29	1.82
70150539--70150754	27	8.0	27	79	9	147	40	19	9	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352