genome.fa.s11.2.7.7.80.10.50.1000.321.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  321  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104239962--104240020	31	1.9	30	83	10	75	66	0	13	20	1.25
104239962--104240020	20	2.9	19	78	16	57	66	0	13	20	1.25
104240908--104241009	18	5.3	18	76	13	105	40	25	23	10	1.87
104240928--104240992	21	3.2	21	78	12	82	43	24	23	9	1.83
104240910--104241009	39	2.6	39	96	0	182	41	25	24	10	1.85
104253865--104253920	27	2.1	26	87	9	78	39	0	5	55	1.23
104259017--104259049	14	2.3	15	94	5	59	81	0	18	0	0.68
104260593--104261036	147	3.0	144	83	9	489	28	17	22	31	1.97
104260832--104260998	83	2.0	83	92	2	282	27	17	24	30	1.97
104260572--104261046	73	6.3	72	81	9	501	27	17	22	32	1.96
104261298--104261409	54	2.0	56	87	5	165	31	13	16	39	1.87
104261078--104261553	142	3.3	143	87	4	643	31	14	18	35	1.91
104261427--104261456	13	2.3	13	94	0	51	16	10	6	66	1.41
104261440--104261607	56	3.0	56	91	0	264	32	12	17	36	1.88
104261311--104261693	198	1.9	196	84	5	502	30	14	18	37	1.90
104261754--104261863	44	2.5	44	96	0	202	21	21	28	28	1.99
104262845--104262914	30	2.3	30	100	0	140	5	35	48	10	1.60
104268347--104268371	13	1.9	13	100	0	50	80	8	4	8	1.03
104268511--104268552	17	2.5	17	82	17	52	64	0	9	26	1.24
104268607--104268800	27	7.0	27	72	9	115	61	4	6	27	1.41
104268989--104269067	22	3.6	22	73	13	74	62	0	10	27	1.28
104268634--104269201	3	189.0	3	66	12	134	59	3	8	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104269777--104269812	6	5.8	6	93	6	63	16	0	0	83	0.65
104269777--104269812	19	1.9	19	94	5	65	16	0	0	83	0.65
104269875--104269914	21	1.9	21	89	0	62	82	0	10	7	0.84
104272104--104272812	246	2.9	246	96	0	1301	31	23	14	30	1.94
104277446--104277470	6	4.2	6	100	0	50	48	16	16	20	1.82
104285034--104285065	15	2.1	15	94	0	55	53	6	3	37	1.42
104285259--104285300	21	2.0	20	90	9	66	59	4	0	35	1.19
104285263--104285328	30	2.3	28	82	17	82	56	4	3	36	1.35
104285394--104285444	27	2.0	26	85	14	70	52	5	5	35	1.50
104285398--104285526	29	4.7	27	73	13	113	55	3	6	33	1.45
104285509--104285578	14	5.5	13	69	24	51	64	1	1	32	1.11
104285512--104285578	25	2.6	24	80	15	73	64	1	1	32	1.12
104285469--104285615	62	2.3	63	78	10	140	59	4	3	31	1.34
104285478--104285588	37	2.9	37	88	5	143	59	2	3	34	1.29
104287372--104287428	24	2.3	23	80	11	69	33	0	40	26	1.56
104295272--104295321	21	2.3	22	83	13	59	44	0	6	50	1.26
104296412--104296452	21	2.0	21	90	0	64	68	4	9	17	1.35
104296491--104296546	27	2.1	27	89	0	85	16	26	30	26	1.96
104297187--104297231	21	2.1	21	91	0	72	15	11	6	66	1.42
104297976--104298513	126	4.3	126	89	1	812	33	17	21	27	1.96
104301512--104302011	116	4.3	116	95	0	883	47	9	3	40	1.53
104301512--104302011	233	2.2	232	95	1	885	47	9	3	40	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104302401--104302440	17	2.3	18	91	4	64	45	15	20	20	1.86
104302491--104302549	30	2.0	30	82	0	73	6	16	44	32	1.74
104304176--104304207	16	2.0	16	93	0	55	71	0	6	21	1.07
104304234--104304280	20	2.2	22	88	7	71	40	0	27	31	1.57
104304234--104304285	11	4.9	11	81	9	63	44	0	26	28	1.55
104304234--104304297	31	2.1	31	82	11	78	43	0	25	31	1.55
104306935--104306974	21	2.0	21	85	5	55	32	27	2	37	1.70
104308068--104308092	12	2.1	12	100	0	50	68	8	16	8	1.38
104308759--104308968	107	2.0	107	89	1	323	34	5	12	47	1.65
104309037--104309075	18	2.2	17	86	4	51	46	0	0	53	1.00
104312199--104312268	25	2.8	25	77	12	81	10	21	17	51	1.74
104312718--104312773	18	2.9	21	78	7	57	66	5	0	28	1.14
104315164--104315216	26	2.0	26	96	0	97	45	7	20	26	1.78
104318451--104318508	26	2.4	24	80	11	64	27	0	5	67	1.12
104319041--104319115	23	3.5	23	64	23	63	58	10	0	30	1.32
104319020--104319113	41	2.3	41	96	1	172	60	11	0	27	1.31
104319782--104319877	27	3.5	26	76	8	84	50	3	2	44	1.29
104319888--104319932	21	2.3	21	85	11	60	60	0	4	35	1.17
104323258--104323282	6	4.2	6	100	0	50	84	0	0	16	0.63
104323413--104323446	6	5.7	6	96	0	59	85	2	0	11	0.71
104325856--104325928	29	2.6	28	84	6	94	26	16	30	27	1.97
104333821--104333891	28	2.6	27	84	10	90	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104336033--104336135	43	2.4	43	83	6	136	18	26	33	22	1.97
104336165--104336229	30	2.2	30	88	0	94	18	30	24	26	1.98
104336176--104336238	30	2.2	28	78	10	72	15	28	26	28	1.96
104337081--104337132	27	2.0	25	81	7	59	26	19	3	50	1.65
104337082--104337164	43	1.9	43	90	0	130	24	22	3	49	1.66
104337565--104337594	16	1.9	16	93	6	53	46	10	0	43	1.37
104339979--104340009	12	2.6	12	94	0	53	6	29	41	22	1.78
104341597--104341674	21	3.6	21	67	13	59	37	26	8	26	1.86
104341595--104341683	44	2.0	44	97	0	169	34	30	10	24	1.88
104346439--104346488	16	3.1	16	75	16	50	68	8	0	24	1.16
104347717--104347742	5	5.2	5	100	0	52	38	0	0	61	0.96
104358722--104358872	75	2.0	75	89	2	232	37	14	29	17	1.90
104358731--104358892	75	2.2	75	86	4	211	38	12	32	16	1.86
104365550--104365596	18	2.6	18	93	0	76	36	23	10	29	1.89
104366782--104366810	3	9.7	3	100	0	58	65	0	34	0	0.93
104377019--104377118	49	2.0	49	100	0	200	19	18	15	48	1.82
104378304--104378386	41	2.0	41	100	0	166	26	24	14	34	1.94
104379997--104380039	21	2.0	21	86	0	59	27	23	23	25	2.00
104382654--104382781	63	2.0	63	100	0	256	9	30	20	39	1.84
104384164--104384328	82	2.0	83	97	1	314	30	21	9	38	1.85
104388104--104388144	21	2.0	21	95	0	73	0	53	19	26	1.45
104388556--104388584	14	2.1	14	93	6	51	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104388750--104388788	17	2.4	17	86	4	53	48	0	10	41	1.37
104392146--104392371	9	24.6	9	75	9	143	38	1	13	46	1.51
104392146--104392371	18	12.3	18	75	9	161	38	1	13	46	1.51
104392133--104392343	114	1.9	114	87	4	318	38	0	12	47	1.48
104392155--104392402	132	1.9	131	86	2	354	38	1	12	47	1.51
104392476--104392522	15	3.1	15	100	0	94	53	0	0	46	1.00
104392904--104392943	14	2.9	14	81	3	55	67	2	0	30	1.04
104393486--104397915	213	20.8	213	88	2	6298	30	16	20	33	1.94
104399789--104400005	9	23.6	9	73	10	134	38	1	13	47	1.52
104399789--104400005	18	12.3	18	73	10	162	38	1	13	47	1.52
104399776--104400036	123	2.2	119	85	7	345	38	1	12	47	1.51
104400110--104400165	15	3.8	15	78	21	73	53	0	0	46	1.00
104400342--104400409	24	2.8	24	86	8	102	42	7	22	27	1.80
104405245--104405276	15	2.1	15	94	0	55	31	9	0	59	1.29
104405212--104405257	23	1.9	24	86	8	67	45	0	0	54	0.99
104405699--104405743	18	2.5	18	89	7	65	46	2	4	46	1.35
104406052--104406241	41	4.7	40	86	5	265	26	30	20	23	1.98
104406214--104406346	41	3.3	41	88	1	169	18	22	24	35	1.96
104406055--104406282	123	1.9	123	84	3	307	25	28	20	25	1.99
104410109--104410148	14	2.9	14	81	3	55	67	2	0	30	1.04
104410691--104415119	213	20.8	213	88	2	6289	30	16	20	33	1.94
104417595--104417675	40	2.0	40	92	0	135	20	8	22	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104419829--104419863	16	2.2	16	90	5	54	34	5	2	57	1.37
104420130--104420222	44	2.1	46	84	8	120	37	23	5	33	1.78
104420204--104420257	16	3.4	16	84	5	65	31	25	3	38	1.74
104420204--104420273	32	2.2	32	85	10	90	31	27	2	38	1.71
104428265--104428291	13	2.1	13	100	0	54	40	7	14	37	1.74
104428435--104428609	83	2.0	88	88	9	261	22	9	20	48	1.78
104430926--104430990	32	2.0	32	100	0	130	33	15	24	26	1.95
104433914--104433977	30	2.1	30	82	5	76	54	3	0	42	1.16
104436345--104436388	22	2.0	23	86	4	63	34	0	0	65	0.93
104436337--104436388	14	3.9	14	77	7	63	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352