Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  313  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102113019--102113081
30
2.1
30
90
0
99
22
3
15
58
1.51
102124097--102124144
25
2.0
24
88
12
71
47
2
20
29
1.61
102136544--102136621
24
3.2
24
63
20
63
34
12
10
42
1.77
102136536--102136631
48
2.0
48
100
0
192
33
12
12
41
1.80
102138467--102138497
15
2.1
15
100
0
62
32
0
25
41
1.56
102143685--102143715
2
15.5
2
100
0
62
0
0
48
51
1.00
102148420--102148479
30
2.0
30
83
9
77
43
3
5
48
1.41
102148480--102148512
16
2.0
17
88
5
50
48
0
0
51
1.00
102148470--102148514
23
2.0
22
82
4
54
48
2
0
48
1.13
102155966--102156027
31
2.0
31
84
3
81
38
6
12
41
1.69
102160921--102160955
4
8.8
4
100
0
70
51
25
0
22
1.48
102162693--102162727
18
1.9
18
88
0
52
40
0
0
60
0.97
102169505--102169578
31
2.4
30
86
4
103
13
32
8
45
1.73
102177796--102178215
141
3.0
140
90
2
628
34
25
10
30
1.89
102179745--102179836
40
2.3
40
92
5
150
33
20
26
19
1.96
102179745--102179877
41
3.3
40
83
10
153
33
20
24
21
1.97
102179759--102179879
40
2.9
42
85
8
151
34
19
23
22
1.96
102179761--102179893
41
3.2
41
80
7
146
35
20
23
21
1.96
102186961--102186997
17
2.2
17
100
0
74
64
18
0
16
1.29
102189363--102189467
3
36.3
3
69
12
51
59
4
1
34
1.30
102189331--102189466
11
11.9
11
70
20
59
59
3
3
33
1.32
102192797--102192821
12
2.1
12
100
0
50
40
36
8
16
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102193794--102193836
16
2.8
15
86
6
59
30
6
0
62
1.21
102201486--102201549
13
4.9
13
84
7
94
37
21
6
34
1.79
102201977--102202032
26
2.2
26
78
12
62
25
10
7
57
1.58
102201983--102202040
27
2.2
25
85
8
80
25
12
6
55
1.61
102205468--102205509
18
2.4
18
80
11
52
26
14
14
45
1.83
102205578--102205950
139
2.7
138
81
6
410
28
25
10
35
1.90
102209702--102210033
42
7.7
42
86
6
405
27
16
5
50
1.68
102209702--102210033
133
2.6
128
83
7
413
27
16
5
50
1.68
102215363--102215398
14
2.6
14
91
8
56
58
5
5
30
1.44
102215686--102215763
38
2.0
39
83
11
99
51
1
2
44
1.23
102215822--102215846
12
2.1
12
100
0
50
72
0
0
28
0.86
102226132--102226198
6
11.2
6
96
0
125
47
17
1
32
1.57
102227411--102227443
17
1.9
17
93
0
57
33
6
6
54
1.50
102227613--102228269
150
4.4
151
92
1
1047
29
6
7
56
1.53
102227420--102228269
302
2.9
298
89
4
1217
29
6
7
56
1.52
102228397--102228467
27
2.6
27
88
0
97
21
36
25
16
1.94
102235819--102235843
12
2.1
12
100
0
50
24
0
16
60
1.36
102238028--102238052
12
2.1
12
100
0
50
8
8
20
64
1.46
102239020--102239088
22
3.0
24
68
23
76
40
10
4
44
1.58
102239417--102239462
21
2.2
21
88
7
67
43
0
0
56
0.99
102239721--102239745
13
1.9
13
100
0
50
40
28
8
24
1.83
102244466--102244511
16
2.8
17
83
3
58
58
2
2
36
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102244500--102244586
40
2.2
40
85
2
111
49
9
8
33
1.64
102248555--102248587
16
2.1
16
100
0
66
39
18
12
30
1.87
102249560--102249598
19
2.1
19
90
9
62
48
17
0
33
1.48
102253282--102253348
35
1.9
35
85
11
93
32
8
20
37
1.84
102255119--102255209
46
2.0
46
91
0
146
27
30
7
34
1.85
102255226--102255301
22
3.3
22
66
28
59
25
27
11
35
1.91
102255183--102255423
47
5.1
47
89
3
340
25
28
12
33
1.92
102255183--102255422
96
2.5
94
88
2
338
25
28
12
33
1.92
102261652--102261691
10
4.0
10
81
12
55
22
7
2
67
1.28
102263523--102263571
20
2.4
21
80
19
59
36
4
8
51
1.51
102271017--102271065
21
2.4
21
80
19
59
32
4
10
53
1.54
102275156--102275225
25
2.8
25
88
0
113
20
18
24
37
1.94
102297730--102297775
23
2.0
23
100
0
92
13
17
17
52
1.75
102302243--102302286
4
11.0
4
100
0
88
25
0
25
50
1.50
102306723--102306804
40
2.0
41
90
4
130
42
17
7
32
1.76
102311901--102311938
14
2.6
15
84
16
53
60
7
0
31
1.25
102320491--102320540
20
2.5
20
84
9
59
34
4
4
58
1.36
102321109--102321133
3
8.3
3
100
0
50
32
0
0
68
0.90
102332774--102332880
54
2.0
54
81
7
128
23
21
34
20
1.97
102333079--102333114
15
2.4
15
100
0
72
36
5
33
25
1.79
102333974--102334010
19
2.0
19
89
5
58
37
0
5
56
1.22
102333965--102334050
20
4.2
20
79
10
86
40
2
3
53
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102341878--102341921
6
7.3
6
84
0
61
15
31
45
6
1.73
102343018--102343065
11
4.7
10
82
10
53
60
0
37
2
1.09
102343492--102343526
18
2.0
17
94
5
61
57
0
0
42
0.99
102349586--102349631
21
2.4
18
85
10
56
34
2
26
36
1.69
102350356--102350394
18
2.2
17
86
4
51
33
2
2
61
1.23
102351265--102351344
34
2.4
34
82
4
90
45
6
12
36
1.67
102362753--102362945
63
3.1
61
77
5
197
20
27
21
31
1.98
102369890--102369929
16
2.5
16
95
0
71
20
12
25
42
1.86
102382385--102382409
9
2.8
9
100
0
50
44
8
12
36
1.71
102388141--102388201
31
2.0
31
90
0
95
37
16
8
37
1.78
102392935--102392974
18
2.3
17
95
4
71
15
20
25
40
1.90
102399767--102399799
6
5.5
6
92
0
57
18
27
0
54
1.44
102403366--102403409
23
1.9
23
90
0
70
27
6
4
61
1.41
102403389--102403459
16
4.7
15
71
16
58
30
1
4
63
1.22
102403569--102403605
18
2.0
19
89
5
58
56
0
0
43
0.99
102408839--102408924
33
2.6
33
81
7
86
22
8
48
20
1.75
102410811--102410845
16
2.2
16
94
0
61
51
5
0
42
1.25
102410836--102411087
97
2.5
103
83
11
317
52
15
1
29
1.52
102410846--102411120
106
2.7
97
82
9
322
52
16
1
29
1.54
102411163--102411275
34
3.2
34
70
14
111
53
13
0
32
1.39
102411170--102411292
41
3.2
41
62
25
97
53
14
0
31
1.41
102411136--102411284
72
2.0
74
93
2
257
55
14
0
30
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102411298--102411415
59
2.0
60
91
1
193
53
11
0
33
1.44
102411914--102411964
24
2.1
24
85
7
68
62
1
1
33
1.17
102411901--102411964
23
2.8
22
77
15
67
59
1
1
37
1.16
102412464--102412503
12
3.3
13
80
13
50
72
0
0
27
0.85
102414596--102414641
23
2.0
23
100
0
92
43
4
21
30
1.72
102419411--102419443
5
6.6
5
96
0
57
39
3
0
57
1.14
102429656--102429706
26
2.0
26
85
11
70
29
7
9
52
1.62
102437303--102437339
18
2.1
18
100
0
74
43
0
35
21
1.53
102441006--102441045
21
1.9
21
84
0
53
27
15
27
30
1.96
102443321--102443389
12
5.8
11
75
20
50
28
2
4
63
1.28
102443317--102443379
24
2.6
23
85
9
74
28
3
3
65
1.24
102443584--102443723
50
2.8
48
75
13
131
33
10
3
52
1.54
102444236--102444289
22
2.5
22
75
0
54
29
7
3
59
1.42
102444504--102444535
15
2.1
15
94
0
55
31
3
0
65
1.08
102444575--102444601
14
1.9
14
100
0
54
25
0
0
74
0.83
102446251--102446296
20
2.5
17
80
13
56
67
4
0
28
1.10
102446250--102446302
18
2.8
20
80
8
65
67
3
0
28
1.07
102446781--102446845
32
2.0
32
87
0
94
36
13
10
38
1.80
102447729--102447781
9
6.0
9
80
10
65
32
0
1
66
1.03
102447832--102447898
24
2.7
26
79
11
68
34
0
5
59
1.22
102447891--102447936
23
1.9
26
83
16
64
39
6
0
54
1.26
102448433--102448488
21
2.6
21
86
8
69
32
7
3
57
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102448663--102448698
16
2.3
15
86
9
54
33
0
11
55
1.35
102452251--102452278
8
3.5
8
100
0
56
53
0
0
46
1.00
102454124--102454169
20
2.3
20
85
7
58
39
19
8
32
1.82
102455911--102455943
5
6.8
5
89
3
50
81
3
15
0
0.80
102456608--102456897
3
97.3
3
66
10
76
28
8
2
59
1.42
102456664--102456897
12
20.0
12
70
10
90
28
9
2
59
1.42
102457110--102457146
6
6.5
6
87
12
60
32
13
0
54
1.40
102457108--102457154
21
2.2
21
88
7
69
34
10
0
55
1.35
102457457--102457495
18
2.2
18
85
0
51
43
7
0
48
1.31
102457453--102457495
16
2.7
16
85
0
59
41
6
0
51
1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352