genome.fa.s11.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  109  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34883646--34883881	50	4.7	50	77	5	224	33	26	15	24	1.95
34883596--34883881	151	1.9	151	84	6	382	33	26	16	24	1.96
34892471--34892648	46	3.7	46	76	15	180	28	28	20	22	1.99
34893976--34894207	50	4.6	49	75	7	189	31	24	16	27	1.97
34895164--34895462	50	5.9	50	77	5	235	33	27	15	24	1.95
34895234--34895415	101	1.8	101	87	0	274	31	26	16	25	1.96
34895333--34895462	52	2.6	50	87	4	172	38	28	10	23	1.87
34899512--34899562	26	2.0	26	84	0	66	33	31	11	23	1.91
34899550--34899595	24	1.9	24	90	0	74	28	36	8	26	1.86
34899587--34899691	40	2.6	40	86	0	129	34	27	17	20	1.95
34902019--34902172	42	3.6	42	79	8	161	30	21	15	32	1.94
34913612--34913800	43	4.4	43	93	1	292	12	23	33	29	1.92
34920788--34920946	27	5.9	27	79	11	157	35	22	23	18	1.95
34920806--34920946	54	2.6	54	92	2	221	36	24	22	17	1.95
34922559--34922666	26	4.2	26	92	0	180	36	23	7	33	1.83
34922559--34922666	52	2.1	52	98	0	207	36	23	7	33	1.83
34931938--34932165	114	2.0	114	98	0	438	27	11	21	40	1.87
34933009--34933042	12	2.8	12	95	0	59	11	23	14	50	1.76
34934257--34934439	79	2.3	81	84	7	232	24	22	27	25	2.00
34934258--34934441	40	4.6	40	83	9	216	23	22	28	25	2.00
34934310--34934474	79	2.1	79	84	6	210	25	21	27	25	1.99
34942343--34942525	79	2.3	81	84	7	232	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34942344--34942527	40	4.6	40	83	9	216	23	22	28	25	2.00
34942396--34942560	79	2.1	79	84	6	210	25	21	27	25	1.99
34969126--34969526	47	8.6	47	93	1	653	31	8	30	29	1.87
34969284--34969359	22	3.3	22	66	10	62	28	10	30	30	1.90
34969126--34969526	140	2.9	141	91	1	671	31	8	30	29	1.87
34976093--34976268	46	3.8	46	77	12	198	21	20	28	29	1.98
34976090--34976261	93	1.8	93	93	0	299	21	20	29	28	1.98
34978678--34978740	29	2.2	29	85	2	83	4	14	9	71	1.28
34984811--34984846	18	1.9	19	88	5	56	19	0	0	80	0.71
34985126--34985240	43	2.7	42	81	6	142	26	24	16	32	1.96
34988973--34989023	25	2.0	25	84	0	66	27	15	23	33	1.95
34996991--34997038	24	2.0	24	100	0	96	33	20	25	20	1.97
34996947--34997081	67	2.0	67	85	2	182	26	17	26	29	1.97
35004958--35005085	49	2.6	49	83	4	152	28	18	27	25	1.98
35008326--35008414	6	14.5	6	71	17	67	48	15	16	19	1.82
35008371--35008418	25	2.0	24	87	4	69	45	16	18	18	1.85
35008310--35008421	31	3.6	31	80	3	120	48	15	16	19	1.82
35008582--35008683	27	3.8	26	87	5	123	36	20	23	19	1.95
35008842--35008906	22	3.0	22	77	8	69	33	21	23	21	1.97
35009326--35009628	27	11.3	27	89	1	403	25	22	19	32	1.98
35009326--35009628	81	3.8	81	90	0	446	25	22	19	32	1.98
35013140--35013268	28	4.5	28	86	4	168	29	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35013140--35013268	58	2.2	57	87	4	179	29	12	25	32	1.92
35021193--35021262	28	2.5	28	83	2	77	30	14	24	31	1.94
35040081--35040145	28	2.4	28	94	2	114	27	9	12	50	1.70
35044694--35044734	22	1.9	21	85	14	57	34	14	7	43	1.73
35049322--35049352	15	2.1	15	100	0	62	12	19	19	48	1.81
35058099--35058223	46	2.6	47	82	5	153	27	22	14	36	1.93
35062683--35062721	20	2.1	19	85	9	53	53	17	25	2	1.56
35070112--35070152	22	1.9	21	85	5	55	12	39	29	19	1.88
35072311--35072439	49	2.6	49	80	8	145	26	17	31	24	1.97
35079098--35079265	40	4.2	40	83	4	106	25	27	23	23	2.00
35079121--35079265	40	3.6	40	85	4	193	23	26	24	25	2.00
35080460--35080520	30	2.0	31	96	3	115	39	16	16	27	1.90
35087150--35087317	40	4.2	40	83	4	106	25	27	23	23	2.00
35087173--35087317	40	3.6	40	85	4	193	23	26	24	25	2.00
35088503--35088577	37	2.0	37	94	2	132	33	22	12	32	1.91
35091502--35091739	50	4.8	50	80	4	239	31	25	17	25	1.97
35093403--35093433	15	2.1	15	93	0	53	35	19	0	45	1.51
35093644--35093977	50	6.6	50	71	6	253	30	25	17	26	1.97
35093736--35093921	51	3.7	51	73	4	178	32	24	17	26	1.97
35093694--35093976	101	2.8	101	88	0	395	30	25	16	26	1.97
35102459--35102533	23	3.3	23	63	26	59	29	32	6	32	1.83
35102318--35102856	47	11.6	47	88	5	687	28	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35104155--35104271	53	2.1	55	95	4	211	23	23	8	44	1.81
35105375--35105539	54	3.0	54	84	4	224	22	24	17	35	1.95
35105518--35105778	95	2.8	91	71	14	248	23	24	16	36	1.94
35105704--35105806	47	2.2	47	96	0	188	25	24	14	35	1.93
35111141--35111616	47	10.1	46	91	3	670	32	9	29	27	1.89
35116078--35116233	64	2.3	66	79	11	165	31	15	30	23	1.95
35120381--35120471	42	2.2	42	80	11	98	30	26	18	24	1.98
35120424--35120554	48	2.7	48	86	0	190	29	25	19	25	1.99
35120536--35120620	37	2.3	37	81	0	107	24	24	18	31	1.98
35123433--35123467	18	1.9	18	94	0	61	37	20	28	14	1.91
35125422--35125463	20	2.1	20	100	0	84	30	14	9	45	1.77
35127973--35128196	40	5.6	40	85	6	292	25	26	23	24	2.00
35127973--35128196	83	2.8	80	87	4	308	25	26	23	24	2.00
35136186--35136290	40	2.7	36	77	18	97	27	24	23	23	2.00
35144240--35144781	47	11.5	47	92	1	861	33	8	29	28	1.87
35146209--35146315	23	5.2	23	58	25	58	23	23	28	24	1.99
35146198--35146513	40	7.9	40	94	0	535	23	22	28	25	1.99
35150522--35151066	47	11.6	47	94	1	914	33	8	29	29	1.86
35153690--35153734	22	2.0	21	84	16	56	28	0	13	57	1.36
35155887--35156065	79	2.3	80	89	3	274	24	23	26	25	2.00
35155887--35156065	40	4.5	40	89	3	274	24	23	26	25	2.00
35159890--35159946	8	6.3	9	78	17	57	45	1	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35159984--35160031	14	3.2	14	80	11	51	75	4	18	2	1.07
35161185--35161218	17	2.0	17	94	0	59	20	11	20	47	1.81
35161487--35161673	46	4.6	40	73	12	130	31	14	21	31	1.94
35161567--35161657	46	2.0	46	97	0	173	35	13	20	30	1.91
35164403--35164480	30	2.7	28	76	9	77	58	1	3	35	1.24
35164422--35164497	36	2.0	39	82	17	97	57	1	5	35	1.29
35168132--35168173	17	2.4	18	85	14	54	40	0	0	59	0.97
35179314--35179497	48	3.9	48	76	7	194	27	19	27	25	1.99
35179309--35179488	95	1.9	95	91	0	297	27	18	27	25	1.98
35184866--35184940	37	2.0	37	100	0	150	21	13	21	44	1.86
35191690--35191741	26	2.0	26	100	0	104	19	30	3	46	1.68
35195723--35195814	43	2.1	42	82	11	107	29	29	17	23	1.97
35205216--35205433	40	5.5	39	88	5	296	24	27	23	24	2.00
35205216--35205433	80	2.7	79	91	3	332	24	27	23	24	2.00
35213437--35213640	40	5.1	39	85	5	266	25	27	22	24	2.00
35213437--35213640	80	2.5	79	90	3	302	25	27	22	24	2.00
35215686--35215767	41	2.0	41	100	0	164	41	9	14	34	1.79
35216430--35216599	46	3.7	46	76	14	195	24	29	18	27	1.98
35216426--35216596	94	1.8	92	92	2	288	24	29	18	27	1.98
35221488--35221735	48	5.2	48	73	7	207	24	19	30	25	1.98
35221501--35221735	96	2.5	95	78	2	265	24	19	30	25	1.98
35225277--35225465	40	4.7	41	82	3	213	24	15	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35225686--35225733	24	2.0	24	100	0	96	33	20	8	37	1.83
35232306--35232581	39	7.1	39	89	0	426	22	28	23	24	1.99
35232301--35232581	117	2.4	117	94	0	490	23	28	23	25	2.00
35236399--35236433	13	2.7	13	95	0	61	28	40	22	8	1.84
35237157--35237203	24	2.0	24	95	0	85	42	17	10	29	1.82
35237439--35237566	46	2.8	45	79	8	123	22	29	18	28	1.98
35237787--35237840	27	2.0	27	100	0	108	7	29	14	48	1.71
35255755--35255898	50	2.9	50	91	0	216	25	20	27	27	1.99
35258549--35258720	46	3.7	45	73	14	134	26	17	30	25	1.97
35258548--35258859	95	3.3	94	79	9	291	25	18	30	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352