genome.fa.s11.2.7.7.80.10.50.1000.322.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  322  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104436337--104436388	18	3.0	18	72	5	54	34	0	0	65	0.93
104436623--104436655	2	16.5	2	100	0	66	0	48	0	51	1.00
104438046--104438072	2	13.5	2	100	0	54	48	0	0	51	1.00
104439372--104439419	14	3.1	14	74	25	51	72	0	4	22	1.01
104439373--104439418	17	2.6	18	87	12	69	76	0	4	19	0.96
104439398--104439458	25	2.4	25	82	17	74	65	0	9	24	1.23
104439418--104439464	14	3.5	14	77	19	55	59	0	12	27	1.34
104439406--104439469	25	2.6	25	83	11	78	64	0	9	26	1.24
104440856--104440894	18	2.2	18	100	0	78	43	0	46	10	1.37
104446732--104446783	15	3.6	15	80	12	56	44	0	1	53	1.11
104446607--104446904	120	2.5	120	91	3	483	42	2	5	50	1.38
104446645--104446843	66	3.2	62	68	22	166	40	3	6	49	1.44
104447118--104447185	16	4.2	16	94	0	118	38	33	0	27	1.57
104447659--104447724	18	3.3	21	76	18	68	45	0	0	54	0.99
104447661--104447713	9	5.4	9	82	12	52	49	0	0	50	1.00
104448753--104448784	16	2.0	16	93	0	55	31	3	0	65	1.08
104448983--104449089	42	2.6	41	86	8	162	33	22	13	30	1.92
104457916--104457951	15	2.4	15	95	0	63	33	0	8	58	1.28
104459145--104459223	40	2.0	41	82	7	99	41	31	3	22	1.72
104461646--104461697	28	1.9	26	84	7	68	26	1	1	69	1.10
104461659--104461741	30	2.7	31	73	14	82	27	4	6	61	1.40
104473084--104473119	17	2.1	17	89	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104473234--104473271	20	1.9	19	85	15	51	55	0	2	42	1.14
104478703--104478748	14	3.4	14	79	5	51	63	2	0	34	1.07
104479244--104479672	213	2.0	213	85	4	571	33	15	17	33	1.91
104488544--104488569	3	8.7	3	100	0	52	69	0	30	0	0.89
104489242--104489276	9	3.9	9	92	0	52	57	2	0	40	1.14
104491675--104491729	18	3.1	19	78	19	57	65	0	0	34	0.93
104491986--104492011	6	4.3	6	100	0	52	30	0	0	69	0.89
104492048--104492084	15	2.3	17	86	9	51	62	5	2	29	1.31
104493570--104493604	17	1.9	19	88	11	56	51	5	0	42	1.25
104499374--104499420	20	2.3	20	86	13	78	48	0	6	44	1.28
104502451--104502528	39	2.0	39	94	0	138	32	7	12	47	1.70
104505153--104505191	15	2.6	15	87	0	51	17	15	2	64	1.41
104505349--104505453	52	2.0	51	85	7	140	39	2	7	50	1.46
104510003--104510116	50	2.3	51	90	3	185	37	14	21	25	1.92
104510107--104510286	31	5.8	31	88	2	229	28	18	24	27	1.98
104510304--104510427	47	2.7	46	84	2	158	29	15	25	29	1.96
104510398--104510480	42	2.0	43	85	7	116	38	12	25	24	1.89
104513475--104513690	107	2.0	108	98	0	416	43	5	9	41	1.60
104522564--104522616	26	2.0	27	85	7	74	24	15	22	37	1.92
104524098--104524162	32	2.0	32	100	0	130	38	24	6	30	1.80
104529147--104529273	61	2.1	61	100	0	254	42	14	9	33	1.77
104529486--104529524	18	2.1	18	85	9	51	38	2	2	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104530210--104530258	20	2.5	20	86	6	64	55	8	4	32	1.48
104534349--104534402	9	5.7	10	82	12	53	40	0	0	59	0.98
104539543--104540533	213	4.7	213	91	1	1508	29	15	20	34	1.94
104542073--104542117	20	2.1	22	84	8	58	66	0	2	31	1.04
104542107--104542146	17	2.5	15	88	12	53	67	2	2	27	1.16
104542943--104543030	28	3.1	28	74	9	90	61	2	3	32	1.25
104543296--104543493	90	2.2	90	80	4	204	34	7	16	42	1.75
104545554--104545682	40	3.2	37	81	15	143	34	21	19	24	1.97
104545963--104546017	28	1.9	29	82	10	69	34	0	7	58	1.26
104546389--104546477	7	12.3	7	72	7	52	24	1	40	33	1.63
104546387--104546452	29	2.3	28	87	7	96	27	1	34	36	1.66
104546868--104546942	26	2.9	27	88	4	109	44	6	4	45	1.48
104547525--104547558	13	2.6	13	90	0	59	23	38	0	38	1.55
104547603--104547654	27	2.0	26	88	7	79	15	34	23	26	1.94
104550699--104551792	240	4.6	241	97	1	2030	35	17	14	33	1.90
104551816--104551931	9	12.3	9	73	12	99	44	21	0	32	1.58
104557849--104558051	85	2.4	85	87	4	302	25	31	18	24	1.98
104557847--104558052	43	4.8	43	87	1	306	25	31	18	24	1.98
104570420--104570462	22	2.0	22	90	0	68	11	18	23	46	1.82
104571385--104571881	23	21.7	23	75	9	383	36	23	7	32	1.82
104571385--104573755	46	51.1	45	68	12	740	37	24	8	30	1.85
104571385--104571956	229	2.5	228	90	4	860	36	24	6	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104571899--104571957	23	2.6	22	81	5	64	38	25	3	32	1.72
104572130--104572626	23	21.7	23	75	9	383	36	23	7	32	1.82
104571234--104573471	745	3.0	745	100	0	4476	37	24	8	29	1.86
104572644--104572702	23	2.6	22	81	5	64	38	25	3	32	1.72
104572875--104573755	23	38.1	23	73	11	472	37	23	7	31	1.82
104574682--104574894	23	9.4	23	77	12	201	39	23	5	32	1.76
104578280--104578317	15	2.6	14	80	19	51	44	39	0	15	1.47
104578273--104578322	22	2.3	21	82	3	64	46	34	0	20	1.51
104581065--104581224	30	5.3	30	89	1	216	26	49	3	20	1.65
104581713--104581842	25	5.5	23	70	15	72	34	4	3	57	1.35
104581730--104581929	25	7.8	25	69	12	95	33	6	4	55	1.46
104582081--104582132	16	3.3	15	89	8	68	30	3	1	63	1.23
104582081--104582132	8	6.5	8	82	8	61	30	3	1	63	1.23
104592100--104592392	73	4.0	71	81	8	318	30	17	21	31	1.96
104592338--104592453	58	2.0	58	88	3	171	25	18	25	30	1.98
104592267--104592528	133	2.0	129	88	4	391	28	17	22	31	1.97
104592396--104592696	75	3.8	77	82	12	344	27	16	20	35	1.94
104592539--104592794	88	3.0	86	83	8	290	26	17	19	36	1.94
104593494--104593658	30	5.5	30	85	1	190	26	47	3	23	1.68
104594146--104594275	23	5.5	23	69	17	72	35	4	3	56	1.35
104594211--104594364	25	6.0	26	72	11	86	33	7	4	53	1.50
104594523--104594556	15	2.3	14	90	10	50	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104594523--104594556	8	4.5	8	96	3	54	29	0	5	64	1.17
104594523--104594567	16	2.8	15	86	10	54	28	2	4	64	1.25
104596595--104596691	3	33.0	3	68	22	55	30	4	3	61	1.30
104596590--104596648	22	2.7	22	76	7	57	27	5	1	66	1.22
104600489--104600583	35	2.7	35	79	11	95	42	2	4	51	1.33
104603460--104603517	26	2.2	26	93	0	98	36	24	5	34	1.78
104611528--104611637	26	4.2	26	94	0	184	38	23	4	33	1.75
104615235--104615284	26	1.9	26	95	0	91	30	32	24	14	1.94
104615336--104615385	26	1.9	26	95	0	91	30	34	24	12	1.91
104615202--104615567	104	3.6	103	94	2	585	30	30	20	18	1.96
104622309--104622572	103	2.6	103	91	3	415	30	29	20	18	1.97
104626564--104626609	20	2.3	19	82	17	58	32	0	0	67	0.91
104626574--104626606	12	2.8	12	82	17	50	36	0	0	63	0.95
104626572--104626604	16	2.1	15	94	5	57	36	0	0	63	0.95
104626626--104626690	21	3.1	21	73	8	53	35	4	0	60	1.18
104638729--104639245	206	2.5	206	89	2	770	31	19	20	28	1.97
104639544--104639602	30	2.0	30	83	12	77	38	35	11	13	1.82
104639781--104639860	25	3.0	25	70	19	81	25	42	12	20	1.86
104641245--104641277	12	2.8	12	82	17	50	36	0	0	63	0.95
104641243--104641275	16	2.1	15	94	5	57	36	0	0	63	0.95
104641295--104641437	7	20.6	7	66	19	52	35	5	0	58	1.21
104641248--104641419	77	2.3	77	78	15	173	36	4	0	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104643952--104644070	49	2.4	48	76	4	121	31	21	11	36	1.89
104644979--104645579	213	2.8	212	85	4	730	30	15	18	35	1.91
104645574--104645643	34	2.1	34	100	0	140	21	22	8	47	1.78
104645582--104645655	34	2.2	34	87	4	105	20	20	12	47	1.81
104645393--104646073	247	2.8	247	87	2	967	28	16	18	37	1.92
104645822--104645890	34	2.0	34	88	0	102	24	21	8	44	1.80
104645837--104645902	34	1.9	34	84	6	89	22	19	13	43	1.86
104647421--104647451	13	2.4	13	100	0	62	22	19	6	51	1.69
104650124--104650253	3	43.0	3	70	14	56	62	3	6	28	1.34
104650161--104650253	18	5.4	17	69	23	70	61	3	6	29	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352