genome.fa.s11.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  148  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48590163--48590327	79	2.1	79	83	6	201	25	21	27	25	1.99
48598159--48598336	40	4.5	40	81	6	202	24	21	27	25	2.00
48598205--48598359	79	2.0	79	83	7	199	25	21	27	25	1.99
48600138--48600186	21	2.3	21	85	0	62	14	32	26	26	1.94
48607657--48607697	21	2.0	21	85	0	55	14	43	19	21	1.87
48611194--48611341	43	3.4	43	84	3	156	32	26	16	25	1.96
48611176--48611333	86	1.8	85	82	6	203	32	26	16	24	1.96
48616050--48616227	27	6.6	27	79	3	115	28	28	16	26	1.97
48616050--48616227	54	3.3	55	80	10	204	28	28	16	26	1.97
48616071--48616226	82	1.9	81	85	3	215	28	28	16	26	1.97
48619155--48619198	22	2.0	22	86	0	61	56	2	0	40	1.11
48619218--48619259	13	2.9	14	80	13	50	54	0	0	45	0.99
48619222--48619258	16	2.3	16	86	13	58	59	0	0	40	0.97
48620787--48620848	30	2.1	30	93	0	106	24	14	24	37	1.93
48622265--48622303	14	2.8	14	96	0	69	33	15	7	43	1.75
48623880--48623921	5	8.8	5	84	10	61	38	0	0	61	0.96
48623878--48623915	8	5.0	8	84	9	53	36	0	0	63	0.95
48623958--48624037	16	4.9	16	68	24	51	76	3	15	5	1.10
48624003--48624037	18	1.9	18	88	0	52	80	0	17	2	0.84
48624714--48624760	24	2.0	24	84	16	62	31	0	17	51	1.46
48624919--48625057	40	3.5	40	69	8	106	28	17	24	30	1.97
48628391--48628618	40	5.7	39	84	7	246	23	23	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48628435--48628616	79	2.3	79	90	2	269	22	24	28	24	2.00
48636104--48636283	40	4.5	40	91	1	263	23	24	27	24	2.00
48636104--48636283	79	2.3	80	89	0	263	23	24	27	24	2.00
48636104--48636308	79	2.6	79	82	5	234	23	23	27	25	2.00
48643979--48644075	40	2.4	40	85	0	122	25	18	22	32	1.97
48644062--48644129	28	2.4	28	85	0	91	23	14	29	32	1.94
48644062--48644143	28	2.9	27	75	13	69	24	13	30	31	1.93
48645628--48645667	21	1.9	21	100	0	80	22	12	15	50	1.77
48660393--48660437	23	2.1	20	88	12	63	48	26	4	20	1.68
48660918--48660979	28	2.2	29	91	5	108	40	17	11	30	1.85
48663717--48663838	29	4.2	29	86	1	174	31	28	14	24	1.95
48664052--48664085	15	2.2	16	89	5	52	11	20	17	50	1.77
48679355--48679425	35	2.0	35	91	5	117	36	11	25	26	1.90
48684454--48684524	35	2.0	35	83	5	90	40	9	22	26	1.85
48685798--48686020	47	4.7	45	74	12	189	28	19	29	22	1.98
48692971--48693238	40	6.7	40	86	2	360	33	28	19	19	1.96
48695284--48695333	23	2.3	21	86	10	66	46	32	4	18	1.67
48702007--48702109	33	3.1	33	88	1	134	30	27	20	22	1.98
48702467--48702526	28	2.1	28	81	6	68	28	16	23	31	1.96
48705098--48705188	29	3.2	28	87	1	119	30	34	13	21	1.92
48706963--48707024	27	2.2	28	88	5	99	48	3	17	30	1.63
48707406--48707446	20	2.1	19	90	4	64	41	2	12	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48715302--48715384	39	2.1	39	90	0	139	33	16	24	25	1.96
48715874--48715967	7	13.4	7	78	4	91	20	0	31	47	1.50
48715874--48715973	14	7.1	14	80	5	103	20	0	33	47	1.50
48715906--48716015	7	15.6	7	79	1	58	21	0	38	40	1.54
48715965--48716015	21	2.4	21	90	0	75	23	0	43	33	1.54
48716154--48716205	14	3.7	14	81	0	59	23	3	30	42	1.72
48716712--48716766	7	7.6	7	82	13	58	74	1	1	21	1.01
48716712--48716766	22	2.5	21	77	13	58	74	1	1	21	1.01
48716710--48716768	28	2.0	29	87	9	84	72	1	1	23	1.02
48718180--48718259	40	2.0	40	92	0	133	25	26	20	28	1.99
48720223--48720663	46	9.6	46	77	6	423	31	6	24	37	1.82
48720222--48720557	137	2.4	137	88	5	466	32	6	23	37	1.80
48720223--48720672	23	19.7	23	74	10	341	31	6	24	37	1.81
48729540--48729576	15	2.5	15	86	0	56	27	40	8	24	1.83
48731312--48731425	27	4.2	27	78	6	90	38	17	11	32	1.85
48731422--48731634	27	7.9	27	86	2	257	29	22	7	40	1.81
48731625--48731863	27	8.8	27	77	5	212	40	19	8	31	1.82
48731492--48731713	54	4.1	54	81	2	151	32	19	9	38	1.84
48731382--48731659	81	3.4	81	77	2	225	32	20	8	38	1.83
48731893--48731985	27	3.4	27	86	2	116	35	19	24	20	1.96
48732978--48733069	42	2.2	42	86	0	130	29	15	20	34	1.93
48733093--48733171	31	2.6	31	87	2	115	31	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48733155--48733230	29	2.6	29	91	0	125	32	26	23	17	1.96
48735914--48736067	41	3.8	40	73	16	136	19	23	29	27	1.98
48744364--48744517	41	3.8	40	73	16	136	18	22	30	27	1.98
48746829--48746881	20	2.8	19	75	13	56	62	1	5	30	1.29
48747907--48748030	57	2.2	58	81	7	137	30	17	19	32	1.95
48749534--48749787	27	9.4	27	85	3	316	38	20	13	27	1.90
48753588--48753912	48	6.8	47	84	3	400	27	17	27	27	1.98
48753594--48753912	96	3.3	96	85	2	453	26	17	27	27	1.98
48764442--48764481	20	2.0	20	90	0	62	40	22	2	35	1.68
48771356--48771385	13	2.3	13	94	0	51	33	0	0	66	0.92
48775010--48775038	15	2.0	15	93	6	51	41	3	34	20	1.69
48778248--48778284	19	1.9	19	88	0	56	35	18	16	29	1.93
48778529--48778577	25	2.0	25	83	0	62	34	16	16	32	1.91
48785411--48785586	27	6.6	27	78	6	169	27	15	27	29	1.96
48795259--48795435	27	6.6	27	83	5	196	29	28	15	26	1.96
48806457--48806634	27	6.6	27	83	3	205	26	15	28	29	1.96
48806458--48806613	82	1.9	81	88	3	233	26	15	28	29	1.96
48806454--48806634	82	2.2	81	83	2	229	27	15	27	29	1.96
48808491--48808537	23	2.0	23	100	0	94	38	8	17	36	1.80
48810208--48810241	16	2.1	17	89	10	54	61	0	14	23	1.33
48811016--48811042	7	3.9	7	100	0	54	59	0	14	25	1.36
48811272--48811378	57	1.9	57	83	9	139	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48813390--48813431	17	2.5	17	96	0	75	19	14	33	33	1.91
48829221--48829404	79	2.3	81	82	7	225	24	21	27	26	1.99
48829220--48829404	40	4.7	40	82	6	216	24	21	27	26	1.99
48829273--48829427	79	2.0	79	82	7	190	25	20	27	27	1.99
48831495--48831523	13	2.2	13	100	0	58	31	0	13	55	1.39
48868750--48868878	47	2.8	47	84	8	158	22	20	27	29	1.98
48868753--48868883	46	2.8	48	85	7	164	22	19	27	30	1.98
48870365--48870412	24	2.0	24	100	0	96	29	25	8	37	1.85
48874471--48874496	6	4.3	6	100	0	52	69	0	0	30	0.89
48877930--48877989	30	2.0	30	90	0	93	16	21	6	55	1.64
48879393--48879505	30	3.8	30	83	2	111	8	2	62	25	1.37
48879424--48879509	6	14.5	6	90	2	120	4	1	66	27	1.19
48879523--48879559	15	2.5	15	86	13	58	10	0	62	27	1.28
48882475--48882515	19	2.2	19	86	4	57	34	4	0	60	1.18
48882473--48882516	18	2.5	17	82	10	52	36	4	0	59	1.18
48884854--48884921	32	2.1	32	88	0	100	27	14	16	41	1.87
48885425--48885562	69	2.0	69	100	0	276	40	7	11	40	1.69
48889278--48889316	16	2.5	16	80	19	55	69	0	30	0	0.89
48891370--48891664	163	1.8	164	83	3	398	27	16	25	30	1.97
48895924--48896095	93	1.8	93	93	0	299	27	29	22	21	1.99
48895917--48896092	46	3.8	45	78	11	194	28	28	21	21	1.98
48899446--48899596	40	3.8	40	90	2	214	25	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48899426--48899612	40	4.7	40	86	3	200	29	27	19	22	1.98
48916781--48916839	27	2.2	26	80	17	68	45	13	0	40	1.43
48930056--48930107	22	2.4	22	90	0	86	23	11	28	36	1.90
48934218--48934315	27	3.5	28	90	2	135	26	13	28	31	1.94
48934246--48934328	27	3.0	27	87	5	96	30	12	25	32	1.92
48934218--48934329	28	4.0	27	83	6	98	28	12	25	33	1.92
48940243--48940295	26	2.0	26	100	0	106	39	7	11	41	1.69
48944932--48945042	43	2.6	43	74	8	118	34	27	10	27	1.90
48951408--48951518	43	2.6	43	74	8	118	34	27	10	27	1.90
48969266--48969374	55	2.0	55	83	0	137	17	27	30	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352