genome.fa.s11.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  276  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90388657--90388771	27	4.3	27	82	5	135	20	24	20	34	1.96
90388660--90388764	55	1.9	54	88	5	158	21	25	19	33	1.97
90393079--90393118	5	8.2	5	97	2	73	37	0	0	62	0.95
90393083--90393139	12	5.0	12	80	16	52	40	0	1	57	1.09
90393086--90393147	20	3.2	20	84	15	69	38	0	3	58	1.15
90394725--90394815	45	2.0	45	91	4	148	23	19	17	39	1.92
90394707--90394840	45	2.7	50	76	16	145	23	20	17	38	1.93
90396165--90396202	2	19.0	2	100	0	76	50	0	0	50	1.00
90404000--90404078	37	2.1	37	88	4	115	25	30	18	25	1.98
90404208--90404690	51	9.8	51	89	5	683	27	30	9	33	1.88
90404198--90404690	98	5.0	98	91	3	778	27	29	8	33	1.87
90410420--90410517	49	2.0	49	95	0	178	25	15	22	36	1.93
90415328--90415431	50	2.1	50	100	0	208	25	7	25	41	1.82
90416977--90417035	29	2.0	29	86	3	82	57	11	13	16	1.65
90420718--90420748	16	1.9	16	93	0	53	38	0	0	61	0.96
90422363--90422402	21	2.0	20	90	5	62	22	0	20	57	1.41
90424338--90424377	21	2.0	20	90	5	62	35	0	22	42	1.54
90424343--90424385	21	2.1	21	83	12	54	32	2	20	44	1.65
90425927--90425970	20	2.2	20	84	12	54	45	13	9	31	1.75
90429326--90429466	72	2.0	72	97	0	264	32	16	23	27	1.96
90438195--90438245	25	2.0	25	96	0	93	43	11	5	39	1.66
90438657--90438927	48	5.6	48	84	0	299	25	17	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90441196--90441364	46	3.6	48	75	12	154	27	20	28	23	1.99
90441277--90441453	49	3.6	50	77	9	152	27	18	29	25	1.98
90447157--90447189	17	2.0	17	94	5	59	36	15	0	48	1.45
90447495--90447739	46	5.3	46	87	1	296	20	22	15	42	1.89
90447495--90447742	91	2.7	92	84	2	311	20	22	14	41	1.89
90450174--90450231	29	2.0	29	82	3	71	29	18	1	50	1.57
90453490--90453537	21	2.3	21	100	0	96	41	4	18	35	1.70
90454210--90454330	46	2.7	44	83	8	154	24	18	31	25	1.97
90456391--90456461	22	3.2	22	95	0	133	12	29	28	29	1.93
90458134--90458357	40	5.7	40	86	7	273	24	22	28	25	2.00
90458134--90458357	79	2.8	81	85	8	282	24	22	28	25	2.00
90458134--90458390	79	3.3	79	82	9	224	25	21	28	24	1.99
90466010--90466142	40	3.3	39	80	12	130	24	23	27	24	2.00
90472309--90472496	38	4.9	38	83	8	213	25	26	21	26	1.99
90480031--90480252	40	5.7	40	83	8	242	25	27	21	25	2.00
90480031--90480252	38	5.6	39	83	7	227	25	27	21	25	2.00
90480031--90480252	78	2.8	79	83	8	265	25	27	21	25	2.00
90486727--90486844	17	6.6	17	83	9	146	36	13	12	37	1.83
90486727--90486844	35	3.3	35	91	3	182	36	13	12	37	1.83
90487247--90488246	207	4.8	207	93	0	1635	29	22	17	30	1.97
90489399--90489454	15	3.7	15	79	15	62	3	14	0	82	0.81
90489393--90489459	24	2.8	24	82	8	75	4	16	0	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90489405--90489459	22	2.6	21	81	13	60	3	14	0	81	0.82
90489399--90489431	8	4.1	8	85	14	50	0	15	0	84	0.61
90495095--90495142	22	2.2	21	78	10	51	37	16	6	39	1.74
90495121--90495264	18	7.9	18	88	4	184	36	15	11	36	1.84
90495121--90495264	35	4.0	36	87	6	193	36	15	11	36	1.84
90495121--90495264	53	2.7	53	91	3	225	36	15	11	36	1.84
90495747--90495799	23	2.4	21	84	12	70	33	3	3	58	1.34
90512099--90512188	28	3.2	28	79	3	90	27	33	10	28	1.89
90512412--90512442	16	1.9	16	93	0	53	9	22	19	48	1.78
90516573--90516597	4	6.2	4	100	0	50	52	0	0	48	1.00
90516670--90516763	28	3.3	28	82	2	107	29	29	14	25	1.95
90516979--90517010	16	2.0	16	93	0	55	9	12	25	53	1.68
90522641--90522758	46	2.6	46	86	2	157	27	22	15	34	1.94
90526959--90527077	48	2.6	47	85	4	152	26	21	15	36	1.93
90536390--90536574	79	2.3	82	83	7	229	24	27	22	24	2.00
90536371--90536574	40	5.1	40	81	8	229	24	27	22	25	2.00
90544339--90544523	79	2.3	82	83	7	229	24	27	22	24	2.00
90544320--90544523	40	5.1	40	81	8	229	24	27	22	25	2.00
90557737--90557794	30	1.9	30	85	0	80	17	29	31	22	1.96
90561332--90561408	38	2.0	38	90	5	120	25	18	35	20	1.95
90579224--90579448	40	5.6	40	82	4	265	23	26	24	25	2.00
90579188--90579448	80	3.3	80	82	4	296	23	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90580043--90580129	38	2.3	38	97	0	165	32	26	13	27	1.94
90586387--90586411	13	1.9	13	100	0	50	40	24	4	32	1.73
90591264--90591307	21	2.1	21	95	0	79	27	29	11	31	1.91
90594367--90594417	26	2.0	26	100	0	102	25	15	15	43	1.86
90599138--90599211	22	3.3	22	68	17	62	45	1	4	48	1.29
90599117--90599191	27	3.0	27	75	12	72	50	0	2	46	1.15
90603403--90603634	40	5.8	41	85	3	312	24	21	28	25	1.99
90603406--90603634	80	2.9	80	90	3	354	23	21	29	25	1.99
90603403--90603654	120	2.1	120	86	2	355	23	21	28	26	1.99
90611465--90611695	40	5.8	41	85	3	303	23	21	29	25	1.99
90611480--90611695	80	2.7	80	92	2	337	24	21	29	25	1.99
90611465--90611715	120	2.1	119	85	2	344	23	20	28	27	1.99
90613680--90613732	4	13.8	4	79	18	51	77	0	1	20	0.87
90613654--90613728	28	2.6	29	79	16	84	76	0	4	20	0.95
90613675--90613735	23	2.5	24	82	12	72	77	0	1	21	0.86
90613679--90613732	27	2.0	28	89	10	85	77	0	1	20	0.86
90613675--90613735	27	2.4	24	78	21	70	77	0	1	21	0.86
90614878--90614924	21	2.3	21	82	14	62	80	0	12	6	0.88
90616024--90616109	43	2.0	43	90	0	136	48	1	26	23	1.58
90622051--90622182	61	2.2	61	84	1	176	14	26	17	41	1.88
90625076--90625107	3	10.7	3	100	0	64	0	34	0	65	0.93
90626562--90626606	22	2.0	22	100	0	90	13	26	17	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90629435--90629472	19	2.0	20	85	15	53	47	5	5	42	1.48
90629714--90629805	46	2.0	46	95	2	168	33	19	5	41	1.74
90631987--90632343	47	7.6	47	76	9	263	23	30	19	26	1.98
90631985--90632249	93	2.8	93	85	7	342	24	29	19	27	1.98
90631988--90632346	93	3.8	92	80	11	269	23	30	19	26	1.98
90631987--90632343	140	2.5	139	80	4	387	23	30	19	26	1.98
90646225--90646264	17	2.4	17	91	0	62	60	10	10	20	1.57
90667107--90667348	123	2.0	123	94	0	421	26	25	16	31	1.96
90668279--90668310	16	2.0	16	100	0	64	43	31	0	25	1.55
90674067--90674187	43	2.9	43	85	2	147	23	28	21	26	1.99
90680245--90680342	27	3.5	28	83	5	110	26	12	27	33	1.92
90680273--90680355	27	3.0	27	82	5	69	28	10	25	34	1.90
90683178--90683256	39	2.0	39	87	0	113	24	31	24	20	1.98
90687832--90688002	43	4.0	43	78	7	152	25	29	19	25	1.99
90699182--90699206	13	1.9	13	100	0	50	16	24	40	20	1.91
90708729--90708780	22	2.3	23	80	3	61	53	1	1	42	1.23
90726779--90726950	67	2.6	66	81	7	170	31	16	29	22	1.96
90726803--90726986	67	2.8	64	77	8	194	28	16	31	23	1.96
90742509--90742557	14	3.4	14	82	5	53	73	12	0	14	1.10
90742516--90742556	22	1.9	21	85	14	57	75	12	0	12	1.05
90744032--90744089	31	1.9	30	85	3	80	32	6	3	56	1.42
90744152--90744214	31	2.1	30	82	11	76	34	7	3	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90749029--90749082	26	2.1	25	83	13	65	75	7	11	5	1.16
90749624--90749666	11	3.8	11	79	14	52	83	2	2	11	0.83
90749624--90749679	13	4.1	13	80	15	60	85	1	1	10	0.74
90749623--90749696	22	3.2	22	84	9	87	82	1	8	8	0.90
90749628--90749696	36	1.9	36	85	5	95	84	1	7	7	0.85
90750766--90751015	64	4.0	64	89	3	368	30	17	14	37	1.90
90751123--90751679	176	3.2	177	88	3	802	28	18	24	28	1.98
90751522--90751799	133	2.1	132	87	1	396	30	19	21	28	1.97
90751938--90751979	14	3.0	14	89	0	57	76	11	0	11	1.03
90751935--90751977	21	2.2	19	83	8	50	81	9	0	9	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352