genome.fa.s11.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  164  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53806164--53806202	10	3.8	10	86	6	60	30	17	15	35	1.91
53806164--53806203	21	1.9	21	94	0	71	30	17	15	37	1.90
53806242--53806292	25	2.0	25	84	0	66	29	19	19	31	1.97
53809661--53809798	40	3.5	40	82	0	159	35	22	13	28	1.92
53814920--53814952	5	6.6	5	100	0	66	21	0	0	78	0.75
53820049--53820222	46	3.8	44	80	10	163	22	28	20	29	1.98
53819858--53820217	140	2.5	143	74	8	335	23	29	19	27	1.98
53821870--53821918	25	2.0	25	87	0	71	24	22	28	24	1.99
53826607--53826722	58	2.0	58	98	0	223	46	25	6	21	1.76
53833070--53833293	49	4.5	49	84	3	263	25	17	28	29	1.97
53833068--53833301	99	2.4	99	80	8	278	24	18	27	29	1.98
53838416--53838638	50	4.5	49	86	6	292	25	17	27	29	1.98
53838409--53838646	99	2.4	98	86	5	329	24	18	27	28	1.98
53845154--53845331	27	6.6	27	84	3	205	29	28	15	26	1.96
53845175--53845330	82	1.9	81	88	3	233	29	28	15	26	1.96
53853351--53853528	27	6.6	27	84	3	205	29	28	15	26	1.96
53853372--53853527	82	1.9	81	88	3	233	29	28	15	26	1.96
53856720--53856754	9	3.9	9	84	0	52	57	8	0	34	1.29
53856719--53856756	18	2.1	18	95	0	67	52	7	0	39	1.31
53857411--53857441	15	2.1	15	93	0	53	41	9	19	29	1.83
53858355--53858389	17	2.1	17	100	0	70	45	22	5	25	1.74
53859322--53859483	7	23.9	7	68	20	62	39	1	8	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53859322--53859406	27	3.1	27	78	11	84	38	2	8	50	1.45
53860352--53860383	16	2.0	16	100	0	64	25	12	25	37	1.91
53860692--53860733	20	2.1	20	90	0	66	30	26	16	26	1.97
53860712--53862359	265	6.3	263	83	3	1823	37	16	16	30	1.91
53863175--53863226	24	2.2	24	100	0	104	30	21	15	32	1.94
53865840--53865935	50	1.9	50	91	0	156	57	12	12	17	1.65
53867576--53867617	19	2.2	19	86	0	57	38	14	21	26	1.91
53867934--53867996	17	3.6	17	80	14	74	44	1	3	50	1.27
53872800--53873010	113	1.9	112	84	4	280	20	21	27	30	1.98
53874110--53874168	20	3.0	20	97	0	109	35	20	8	35	1.83
53874411--53874490	29	2.7	30	80	3	90	46	8	23	21	1.79
53874293--53874503	30	7.1	30	70	8	119	40	15	23	20	1.90
53874293--53874503	89	2.4	89	78	4	228	40	15	23	20	1.90
53877904--53877946	19	2.3	19	100	0	86	46	4	9	39	1.57
53879586--53879611	3	8.7	3	100	0	52	65	0	0	34	0.93
53887786--53888121	69	4.9	69	82	4	320	34	23	21	20	1.97
53887802--53888145	138	2.5	138	80	3	372	33	24	21	20	1.97
53888022--53888171	69	2.2	69	86	4	205	36	26	17	20	1.94
53890142--53890192	26	2.0	26	92	0	84	35	25	19	19	1.95
53896453--53896519	30	2.2	31	89	5	100	14	5	8	70	1.32
53896718--53896759	20	2.1	20	82	8	50	35	0	7	57	1.26
53900250--53900310	30	2.0	30	96	0	113	29	29	6	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53901900--53901927	2	14.0	2	100	0	56	0	50	0	50	1.00
53910152--53910274	27	4.6	27	69	10	83	49	1	0	47	1.16
53910848--53910903	25	2.3	24	81	9	60	53	0	1	44	1.11
53911162--53911200	17	2.2	18	90	4	62	56	2	0	41	1.13
53917491--53917647	42	3.7	42	79	4	181	32	21	12	33	1.91
53923340--53923503	42	3.9	42	81	4	195	30	25	14	29	1.95
53928399--53928450	16	3.3	15	77	20	52	34	19	0	46	1.50
53931268--53931529	79	3.3	80	90	4	381	24	27	23	24	2.00
53931266--53931529	119	2.2	121	82	7	326	24	27	23	24	2.00
53931247--53931529	40	7.1	40	79	9	303	24	27	22	25	2.00
53933765--53933818	16	3.4	16	86	0	81	37	3	29	29	1.75
53933800--53933892	44	2.1	46	86	8	129	34	4	24	36	1.75
53951539--53951757	40	5.6	40	81	5	241	26	26	22	24	2.00
53951548--53951757	79	2.7	79	82	5	237	26	26	22	24	2.00
53957308--53957529	46	4.7	46	80	8	209	23	29	18	28	1.98
53957308--53957529	94	2.4	92	80	8	236	23	29	18	28	1.98
53960351--53960469	57	2.1	56	95	1	211	45	10	23	21	1.82
53961599--53961821	39	5.7	40	84	7	278	24	21	28	25	1.99
53961599--53961821	79	2.8	78	84	7	256	24	21	28	25	1.99
53961644--53961854	79	2.7	79	83	5	232	26	20	27	25	1.99
53968788--53968962	38	4.4	38	80	9	158	24	18	28	29	1.98
53968828--53968962	38	3.5	38	81	11	159	24	17	28	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53970293--53970534	27	9.0	27	89	0	340	41	7	21	28	1.81
53972747--53972820	31	2.4	31	93	2	123	32	27	16	24	1.96
53972844--53972935	42	2.2	42	94	0	157	39	21	10	28	1.87
53973172--53973226	20	2.8	20	86	10	71	34	18	9	38	1.82
53973254--53973301	25	1.9	25	86	0	69	31	18	20	29	1.97
53973904--53973968	27	2.4	27	82	5	78	21	24	18	35	1.96
53974026--53974103	29	2.8	28	81	11	97	30	6	20	42	1.77
53974026--53974129	27	3.8	28	80	8	115	29	4	21	44	1.73
53974109--53974290	81	2.3	79	86	4	240	29	9	20	40	1.84
53974254--53974599	54	6.4	54	85	2	300	37	8	22	31	1.83
53974084--53974619	27	19.9	27	83	4	215	35	8	21	34	1.84
53974254--53974599	81	4.3	81	84	0	415	37	8	22	31	1.83
53974310--53974599	54	5.4	54	89	1	356	39	8	23	29	1.83
53976829--53976906	31	2.6	31	91	4	124	28	24	19	28	1.98
53976929--53977018	42	2.2	40	92	4	144	38	22	12	26	1.89
53977163--53977259	26	3.8	26	88	1	144	25	24	23	25	2.00
53977309--53977384	20	3.9	20	86	8	104	32	19	10	36	1.86
53977309--53977364	11	5.5	11	75	16	66	30	19	12	37	1.89
53978036--53978100	27	2.4	27	81	0	76	21	21	18	38	1.93
53978165--53978235	28	2.6	27	80	10	81	35	5	12	46	1.66
53978272--53978476	80	2.5	81	86	2	270	29	9	20	40	1.84
53978131--53978476	27	12.8	27	79	3	282	31	10	19	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53978221--53978544	54	6.0	54	81	4	226	31	9	20	37	1.85
53978469--53978650	27	6.7	27	87	2	231	39	9	21	29	1.85
53980042--53980101	30	2.0	30	87	6	86	28	26	8	36	1.85
53985274--53985327	26	2.1	25	83	10	65	66	1	9	22	1.30
53992675--53994089	354	4.0	352	81	2	1494	32	13	21	32	1.92
53992714--53994089	707	1.9	707	82	3	1705	32	13	20	33	1.91
54009644--54009696	26	2.0	26	100	0	106	33	22	0	43	1.54
54009975--54010099	43	2.9	43	89	2	162	33	24	16	25	1.96
54020154--54020325	93	1.8	93	96	0	317	27	29	21	20	1.98
54020147--54020322	46	3.8	46	79	12	216	28	29	21	20	1.98
54022698--54022744	15	3.2	15	80	14	62	59	12	14	12	1.61
54025688--54025859	93	1.8	93	94	0	308	27	29	20	22	1.99
54025681--54025856	46	3.8	46	78	12	207	28	28	20	21	1.98
54028180--54028212	16	2.0	17	88	5	50	36	0	12	51	1.39
54030005--54030038	14	2.4	14	90	0	50	35	2	20	41	1.68
54030904--54030941	15	2.6	15	79	4	51	10	10	15	63	1.52
54034078--54034163	45	1.9	44	95	2	154	24	9	24	41	1.84
54035201--54035244	22	2.0	22	95	0	79	38	9	25	27	1.86
54036331--54036503	27	6.4	27	89	0	256	34	19	21	24	1.96
54036504--54036557	27	2.0	26	85	3	72	22	20	18	38	1.93
54037234--54037292	27	2.2	26	84	3	73	22	23	18	35	1.96
54044050--54044172	22	5.3	22	62	27	58	32	13	29	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54044034--54044218	47	3.9	47	91	0	289	33	11	28	26	1.92
54044423--54044535	37	3.1	37	94	0	190	22	18	30	28	1.97
54050592--54050713	22	5.3	22	62	21	61	25	29	11	33	1.91
54050564--54051211	47	13.6	47	91	3	912	28	29	8	33	1.87
54050708--54050785	25	3.2	24	66	23	65	32	32	6	29	1.83
54050578--54051211	145	4.4	143	90	5	887	28	29	9	33	1.88
54052664--54052779	56	2.1	56	98	0	223	23	23	8	44	1.80
54059408--54059439	12	2.6	13	90	9	50	50	25	6	18	1.70
54061195--54061367	93	1.9	93	96	0	319	38	21	5	34	1.76
54063326--54063586	46	5.6	45	74	13	181	28	17	29	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352