genome.fa.s11.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  125  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40041207--40041342	27	5.0	28	85	1	129	31	22	5	40	1.76
40041210--40041363	54	2.9	53	79	2	155	31	23	5	39	1.78
40041180--40041363	81	2.3	81	81	1	181	32	23	5	37	1.79
40041231--40041363	27	4.9	27	86	0	176	31	22	4	41	1.74
40041359--40041588	27	8.5	27	82	5	214	37	20	19	23	1.94
40041359--40041588	54	4.3	54	85	3	248	37	20	19	23	1.94
40041380--40041606	81	2.8	81	82	0	267	36	19	21	23	1.95
40042032--40042087	22	2.5	22	75	11	60	21	23	19	35	1.96
40042032--40042096	22	3.0	22	69	13	53	21	23	20	35	1.96
40042247--40042302	26	2.2	26	87	3	78	17	23	19	39	1.92
40042254--40042328	26	2.8	27	85	2	89	18	24	21	36	1.95
40042262--40042328	27	2.5	26	85	2	80	19	25	19	35	1.95
40042415--40042511	6	15.8	6	76	12	90	20	18	15	45	1.85
40042405--40042527	31	4.0	31	84	3	151	20	17	14	47	1.83
40044440--40044590	27	5.6	27	86	6	200	40	19	7	32	1.80
40044431--40044590	54	3.0	54	85	3	223	39	19	8	33	1.81
40044440--40044718	27	10.3	26	81	5	159	39	20	9	30	1.84
40044447--40044605	81	2.0	82	86	6	225	38	18	9	32	1.83
40044449--40044716	54	5.0	53	74	9	195	38	20	9	30	1.85
40044701--40044873	27	6.4	27	86	0	229	32	21	5	40	1.77
40044682--40044867	81	2.3	81	83	1	203	33	22	5	38	1.78
40044881--40045040	27	5.9	27	85	2	196	38	19	18	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40044882--40045068	81	2.3	81	85	4	245	38	18	18	24	1.93
40045496--40045557	22	2.8	22	87	7	90	22	24	20	32	1.98
40045698--40045762	26	2.5	26	85	7	80	20	24	18	36	1.94
40045922--40046018	6	15.8	6	72	16	74	19	17	15	47	1.83
40045899--40046034	31	4.4	31	84	3	150	19	16	15	49	1.80
40051198--40051303	54	2.1	48	76	19	108	33	16	25	23	1.96
40051225--40051374	53	2.8	52	76	13	144	36	16	22	24	1.94
40068496--40068539	15	2.8	16	77	19	56	4	25	0	70	1.06
40074188--40074431	127	1.9	128	87	3	357	22	37	2	37	1.69
40080529--40080651	29	4.3	29	83	6	162	25	15	29	30	1.96
40084587--40084693	29	3.7	29	80	3	128	26	13	29	30	1.93
40084577--40084698	57	2.1	57	82	5	140	26	12	30	31	1.92
40092225--40092286	32	1.9	32	100	0	124	22	22	6	48	1.73
40092392--40092438	23	2.0	23	87	0	67	19	23	14	42	1.88
40096547--40096587	5	8.0	5	91	2	64	0	21	2	75	0.92
40097194--40097261	12	5.6	12	74	22	70	23	1	5	69	1.19
40097196--40097277	37	2.2	36	81	14	87	25	1	6	67	1.21
40097906--40097970	31	2.1	31	85	0	85	61	18	4	15	1.50
40098198--40098237	21	1.9	21	84	0	53	5	45	20	30	1.72
40098660--40098691	13	2.4	14	94	5	57	53	9	0	37	1.34
40101141--40101183	18	2.3	19	80	15	54	44	0	13	41	1.44
40102371--40102672	23	13.1	22	73	12	76	40	24	4	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40102523--40102579	22	2.5	23	77	2	62	50	21	0	28	1.48
40102453--40102686	91	2.6	92	79	8	278	42	23	3	31	1.70
40102371--40102686	69	4.6	69	75	10	252	40	24	5	30	1.76
40102428--40102686	23	11.3	23	79	8	242	41	22	3	31	1.72
40106281--40106349	29	2.6	26	76	14	77	27	1	11	59	1.41
40106292--40106355	29	2.2	29	94	2	112	26	0	12	60	1.32
40107237--40107294	21	2.8	21	74	7	55	56	0	5	37	1.21
40107254--40107323	30	2.2	31	80	12	79	48	1	8	41	1.42
40107962--40108010	26	2.0	24	84	11	64	57	8	6	28	1.52
40110496--40110540	11	3.9	11	80	11	54	35	0	2	62	1.08
40112306--40112620	46	6.8	45	86	7	411	42	14	23	19	1.88
40112316--40112620	92	3.3	92	90	0	468	41	15	23	19	1.89
40112316--40112620	138	2.2	138	92	0	502	41	15	23	19	1.89
40115028--40115250	47	4.7	47	89	3	315	31	9	30	27	1.88
40115369--40115447	37	2.1	37	88	0	113	24	18	30	26	1.98
40120610--40120777	40	4.2	40	83	4	106	25	27	23	23	2.00
40120633--40120777	40	3.6	40	85	4	193	23	26	24	25	2.00
40121963--40122035	35	2.0	36	92	7	121	32	23	10	32	1.89
40140325--40140392	8	8.5	8	85	0	82	44	19	25	11	1.84
40140318--40140392	32	2.3	32	90	0	114	45	18	24	12	1.83
40140619--40140718	29	3.5	29	78	6	105	26	16	30	28	1.96
40142281--40142374	46	2.0	46	100	0	188	41	20	2	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40142614--40142836	40	5.6	40	92	0	365	22	28	21	27	1.99
40150730--40150787	30	1.9	30	89	0	89	34	15	22	27	1.94
40151126--40151392	47	5.7	45	74	11	191	29	18	27	24	1.98
40151129--40151386	140	1.8	140	82	4	333	30	18	27	24	1.98
40158416--40158473	30	1.9	30	92	0	98	34	13	22	29	1.93
40158815--40159072	47	5.5	45	76	11	209	29	17	29	24	1.97
40158815--40159077	140	1.9	141	85	5	372	29	17	29	24	1.97
40159532--40159635	55	1.9	55	81	0	127	22	30	24	23	1.99
40167305--40167527	48	4.6	47	81	4	257	19	17	24	38	1.93
40167305--40167527	96	2.3	96	87	1	304	19	17	24	38	1.93
40172361--40172537	49	3.6	49	82	3	246	31	26	18	24	1.97
40172360--40172542	100	1.8	100	95	0	330	30	26	19	24	1.98
40175045--40175107	31	2.0	31	87	0	90	25	25	14	34	1.94
40175330--40175399	25	2.8	26	89	6	101	27	22	24	25	2.00
40175450--40175516	20	3.3	20	87	8	109	31	19	11	37	1.88
40175450--40175505	11	5.5	11	68	23	50	30	19	12	37	1.89
40183226--40183297	26	2.8	26	93	2	119	26	23	25	25	2.00
40188902--40189107	47	4.4	47	92	0	322	32	9	30	28	1.88
40189226--40189304	37	2.1	37	88	4	115	25	18	30	25	1.98
40190565--40190667	43	2.4	43	98	0	197	22	15	34	27	1.94
40190649--40190722	29	2.6	29	89	4	105	25	16	32	25	1.96
40191073--40191390	80	4.0	80	92	0	476	25	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40191035--40191390	120	3.0	120	88	2	493	24	21	27	26	1.99
40191073--40191345	40	6.8	40	96	0	485	25	21	26	27	1.99
40194910--40195264	47	7.5	47	88	2	512	33	8	29	29	1.87
40194910--40195264	96	3.7	95	89	3	502	33	8	29	29	1.87
40194910--40195264	143	2.5	141	87	2	521	33	8	29	29	1.87
40195383--40195461	37	2.1	37	88	4	115	25	18	30	25	1.98
40218401--40218988	47	12.5	47	94	0	960	32	8	29	29	1.87
40219107--40219185	37	2.1	37	88	4	115	25	18	30	25	1.98
40222526--40222711	68	2.8	66	79	10	211	26	28	15	29	1.96
40223376--40223436	30	2.0	30	83	0	77	31	22	8	37	1.84
40229429--40229506	30	2.5	31	91	2	122	20	28	21	29	1.98
40229727--40229796	25	2.8	25	93	0	113	27	22	24	25	2.00
40229844--40229900	20	2.8	20	94	5	98	35	19	10	35	1.86
40229844--40229912	11	6.7	11	74	14	67	34	18	11	34	1.87
40253965--40254645	96	7.3	94	89	5	1024	32	8	29	29	1.87
40254215--40254284	36	1.9	36	97	0	131	30	11	25	32	1.91
40253965--40254645	47	14.6	47	89	5	1024	32	8	29	29	1.87
40253976--40254645	275	2.4	279	91	3	1073	32	8	29	29	1.87
40256573--40256606	17	2.0	17	88	0	50	17	26	2	52	1.58
40256638--40256752	51	2.3	50	94	4	198	13	21	2	62	1.42
40261424--40261585	42	3.9	42	75	6	148	29	18	25	26	1.98
40261430--40261585	84	1.9	84	87	0	231	29	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40264612--40264755	71	2.0	71	98	0	279	21	30	15	32	1.94
40264612--40264804	71	2.7	70	88	9	252	20	30	15	33	1.94
40270287--40270384	28	3.5	28	90	2	135	31	28	13	26	1.94
40300667--40300946	27	10.4	27	85	0	310	35	21	13	30	1.92
40304615--40304664	16	3.2	16	75	10	50	54	22	2	22	1.55
40305470--40305590	45	2.7	45	80	0	143	36	24	14	24	1.93
40306193--40306239	25	1.9	25	91	4	78	46	21	4	27	1.69
40310081--40310184	26	4.2	26	87	8	162	35	25	7	31	1.84
40310916--40310956	20	2.0	20	100	0	82	24	29	14	31	1.95
40317076--40317183	26	4.2	26	91	0	180	37	24	6	32	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352