Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  132  of  352  ( 42160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42657812--42658074
48
5.6
48
83
3
302
24
26
20
28
1.99
42657812--42658029
94
2.3
96
85
1
296
23
27
20
27
1.99
42657812--42658074
94
2.8
92
82
4
287
24
26
20
28
1.99
42657812--42658071
142
1.8
141
85
4
362
24
26
20
28
1.99
42667241--42667302
29
2.1
30
90
3
99
40
11
12
35
1.80
42669691--42670011
48
6.6
48
82
4
403
28
27
16
27
1.97
42669691--42670011
144
2.2
145
87
2
448
28
27
16
27
1.97
42673489--42673513
11
2.3
11
100
0
50
36
0
20
44
1.52
42677400--42677631
49
4.7
49
84
3
284
28
26
18
26
1.98
42677387--42677632
101
2.5
99
85
2
332
28
26
18
26
1.98
42677933--42677974
16
2.6
16
100
0
84
38
21
0
40
1.53
42679974--42680104
47
2.8
47
84
5
158
22
16
28
32
1.95
42680798--42680830
13
2.6
13
90
4
50
48
12
0
39
1.40
42689047--42689175
48
2.7
48
87
1
179
21
14
29
34
1.93
42693642--42693798
46
3.4
46
79
13
137
26
29
17
26
1.98
42698229--42698265
15
2.5
15
90
0
65
48
24
5
21
1.71
42700382--42700601
40
5.6
40
79
5
232
25
25
22
25
2.00
42703933--42704656
47
15.4
47
96
0
1270
32
8
29
29
1.87
42704775--42704853
37
2.1
37
90
0
122
24
18
31
25
1.98
42708494--42708536
13
3.2
12
81
18
50
6
9
4
79
1.06
42710273--42710322
20
2.6
20
84
6
59
58
0
4
38
1.17
42711659--42711694
10
3.6
10
88
0
54
13
0
2
83
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42711659--42711690
16
2.0
16
93
0
55
12
0
3
84
0.74
42711904--42712152
44
5.7
43
88
1
336
26
28
14
30
1.95
42711911--42712152
132
1.8
132
89
0
376
26
28
14
31
1.94
42712301--42712551
89
2.8
88
89
2
290
27
23
18
29
1.98
42712352--42712551
89
2.2
89
96
0
364
25
23
20
31
1.98
42720948--42720978
16
1.9
16
93
0
53
9
9
9
70
1.33
42723127--42723206
39
2.1
39
95
0
142
27
22
22
27
1.99
42731166--42731284
39
3.1
39
91
0
193
25
21
24
29
1.99
42735406--42735588
79
2.3
81
85
7
241
25
27
22
24
2.00
42735385--42735588
40
5.1
40
81
8
238
25
27
22
24
2.00
42743569--42743751
79
2.3
81
85
7
241
25
27
22
24
2.00
42743548--42743751
40
5.1
40
81
8
238
25
27
22
24
2.00
42747401--42747514
43
2.7
42
77
8
113
30
25
14
28
1.95
42749718--42749747
13
2.3
13
94
0
51
6
33
0
60
1.23
42758682--42758733
26
2.0
26
88
3
77
36
15
15
32
1.89
42762695--42762752
26
2.1
26
81
9
62
32
8
17
41
1.80
42764519--42764587
26
2.7
26
79
0
75
24
23
28
23
1.99
42765367--42765437
30
2.4
30
92
0
115
21
29
29
19
1.98
42769517--42769608
37
2.4
36
81
15
98
39
5
4
51
1.45
42770668--42770718
25
2.0
25
96
0
93
13
1
23
60
1.43
42774401--42774512
56
2.0
56
100
0
224
46
26
3
23
1.68
42776176--42776268
4
23.2
4
97
0
177
23
0
25
50
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42778269--42778306
18
2.1
18
85
9
51
50
5
5
39
1.48
42779244--42779313
28
2.8
24
76
18
70
54
1
1
42
1.18
42779258--42779314
28
2.0
29
93
3
98
54
0
0
45
0.99
42785207--42786111
140
6.9
126
76
10
553
27
19
21
31
1.97
42785319--42786124
140
6.0
140
80
8
816
27
19
21
31
1.97
42785621--42786126
126
3.9
127
78
10
504
27
20
21
31
1.98
42785747--42786019
139
2.0
139
86
2
386
26
21
21
30
1.98
42785888--42786136
125
2.0
125
85
3
340
28
20
20
30
1.98
42786987--42787589
127
4.7
129
91
3
948
27
6
17
48
1.72
42786995--42787589
256
2.3
257
92
1
989
26
7
17
48
1.73
42791944--42792048
41
2.6
41
80
1
122
26
24
25
22
2.00
42799503--42799596
39
2.4
38
84
5
118
36
39
11
12
1.80
42799952--42800026
17
4.1
18
68
17
55
17
40
28
14
1.89
42803665--42803760
40
2.4
40
86
8
133
27
16
28
28
1.97
42806609--42806655
23
2.0
23
95
0
85
42
12
2
42
1.55
42809662--42809744
41
2.0
41
95
0
148
27
26
19
26
1.99
42814543--42814579
13
2.8
13
91
0
65
27
24
40
8
1.83
42822001--42822059
13
4.5
13
81
8
66
28
20
42
8
1.81
42825256--42825297
20
2.2
18
87
8
57
35
0
2
61
1.09
42825446--42825505
30
2.0
30
93
0
102
25
18
13
43
1.86
42827375--42827449
25
3.0
25
88
0
114
28
22
18
30
1.97
42827355--42827449
50
1.9
50
86
0
136
28
22
18
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42827945--42828016
23
3.1
23
70
4
56
18
16
22
43
1.88
42827945--42828041
46
2.1
46
82
3
115
16
16
23
43
1.87
42832405--42832519
44
2.6
45
83
6
128
28
22
18
30
1.97
42844827--42844878
22
2.5
21
81
12
54
53
3
7
34
1.48
42855200--42855559
46
7.6
46
72
12
191
24
27
20
27
1.99
42869140--42869183
20
2.2
20
95
0
79
20
31
29
18
1.96
42873351--42873567
50
4.6
46
72
15
120
25
31
17
25
1.97
42873347--42873664
94
3.4
93
78
11
319
25
30
18
26
1.98
42876815--42876888
27
2.9
25
72
7
76
28
20
25
25
1.99
42880511--42880561
19
2.7
19
87
6
68
50
5
17
25
1.68
42893824--42893963
29
4.9
29
80
3
142
25
32
14
27
1.94
42894197--42894240
16
2.8
16
92
0
70
11
20
20
47
1.80
42894198--42894241
8
5.5
8
77
0
52
9
22
20
47
1.78
42898417--42898533
29
4.0
29
85
0
135
27
30
13
28
1.94
42900046--42900077
16
2.0
16
93
0
55
9
6
34
50
1.60
42900724--42900775
17
2.7
19
77
17
63
40
19
15
25
1.90
42909881--42909916
7
5.0
7
86
6
54
69
0
0
30
0.89
42909881--42909978
17
6.3
15
78
15
94
63
1
4
31
1.20
42909953--42909992
21
1.9
21
89
0
62
60
2
2
35
1.24
42914618--42914668
21
2.4
21
87
6
68
62
1
0
35
1.06
42916042--42916088
24
1.9
25
86
4
69
46
2
2
48
1.25
42916046--42916112
30
2.2
30
79
12
75
50
2
1
44
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42916133--42916181
19
2.5
21
75
15
52
46
8
0
44
1.33
42916284--42916334
26
1.9
27
88
4
77
33
21
7
37
1.82
42929470--42929499
6
5.0
6
91
0
51
53
16
13
16
1.73
42929854--42929967
19
5.7
21
83
10
80
39
16
7
35
1.78
42929854--42929911
22
2.6
22
81
7
64
41
17
5
36
1.72
42929890--42929982
19
4.9
19
97
2
179
36
16
10
36
1.83
42929883--42929982
37
2.7
38
93
6
179
36
17
10
37
1.83
42929883--42929991
56
2.0
56
87
8
163
36
15
11
36
1.83
42930100--42930136
19
1.9
19
88
0
56
10
2
13
72
1.21
42931457--42931488
16
2.0
16
93
0
55
75
0
3
21
0.95
42931473--42931583
10
11.4
10
72
9
77
62
0
0
37
0.96
42931480--42931564
19
4.3
20
75
15
63
60
0
0
40
0.97
42931493--42931583
39
2.3
39
83
5
103
61
0
0
38
0.96
42931474--42931565
18
4.8
19
74
21
86
59
0
0
40
0.97
42931624--42931681
19
3.1
18
78
16
64
60
3
8
27
1.42
42931627--42931681
20
2.8
21
76
15
64
63
3
7
25
1.37
42931701--42931745
21
2.1
21
87
0
63
20
4
0
75
0.97
42931701--42931736
10
3.5
10
88
7
54
19
2
0
77
0.88
42931701--42931745
11
4.2
11
88
5
65
20
4
0
75
0.97
42931849--42931926
30
2.6
29
76
8
84
25
1
5
67
1.18
42938512--42938627
46
2.5
46
92
0
196
33
2
12
51
1.53
42941986--42942012
13
2.1
13
100
0
54
29
0
33
37
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42942701--42942970
133
2.0
134
78
7
282
23
14
20
42
1.88
42950143--42950178
18
2.0
18
88
0
54
22
38
8
30
1.83
42950484--42950508
3
8.3
3
100
0
50
32
0
0
68
0.90
42961497--42961523
13
2.1
13
100
0
54
7
22
18
51
1.70
42969088--42969253
46
3.6
46
76
13
171
29
28
21
21
1.98
42969093--42969263
93
1.8
93
91
2
281
28
29
21
21
1.98
42969090--42969279
46
4.1
44
71
16
127
28
28
21
21
1.98
42973006--42973285
48
5.8
48
90
0
425
28
18
25
27
1.98
42973006--42973379
96
4.0
96
80
9
409
29
18
25
26
1.98
42973053--42973357
48
6.6
43
77
16
137
29
18
25
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352