genome.fa.s11.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  194  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63912279--63912373	27	3.5	28	81	11	108	26	13	28	31	1.94
63912322--63912386	27	2.4	27	87	5	78	30	10	23	35	1.89
63918384--63918566	79	2.3	81	85	7	241	25	27	22	24	2.00
63918364--63918566	40	5.1	40	82	7	245	25	28	22	24	1.99
63920269--63920453	48	3.8	48	90	5	309	30	26	7	35	1.84
63920269--63920452	98	1.9	96	93	4	316	30	26	7	35	1.84
63920423--63920708	47	6.1	47	91	0	432	26	29	11	32	1.91
63920516--63920638	22	5.3	22	64	27	67	25	30	13	31	1.93
63920328--63920708	141	2.7	139	82	6	428	27	28	10	33	1.90
63924034--63924100	25	2.7	25	84	9	91	25	16	25	32	1.96
63928824--63928881	30	1.9	31	89	3	91	36	0	6	56	1.26
63931085--63931185	50	2.0	49	90	1	157	53	11	4	29	1.58
63950575--63950846	40	6.8	40	93	1	454	23	29	21	26	1.99
63950575--63950854	122	2.3	122	93	1	467	23	28	21	26	1.99
63953307--63953392	40	2.2	40	89	6	131	23	23	27	25	2.00
63955380--63955459	25	2.9	27	71	17	67	52	5	1	41	1.31
63957776--63957800	13	1.9	13	100	0	50	12	0	0	88	0.53
63962134--63962187	20	2.7	21	75	11	60	35	0	7	57	1.27
63963145--63963205	27	2.3	26	86	8	79	39	3	16	40	1.65
63978155--63978264	55	2.0	55	82	10	136	30	30	26	13	1.94
63993643--63993667	13	1.9	13	100	0	50	32	4	24	40	1.73
64002511--64002587	27	2.9	27	79	11	86	20	20	20	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64002628--64002679	27	1.9	27	85	14	72	38	11	11	38	1.78
64002691--64002809	27	4.4	27	76	10	102	26	6	23	42	1.79
64002845--64002936	27	3.4	27	86	3	123	43	8	19	28	1.80
64008704--64008861	43	3.7	43	80	9	171	22	17	25	34	1.96
64011095--64011268	87	2.0	87	97	0	330	36	15	22	25	1.93
64013346--64013604	40	6.5	40	93	1	400	25	28	22	23	1.99
64019316--64019479	42	3.9	41	80	4	184	33	15	21	29	1.94
64021754--64021793	21	2.0	21	90	5	64	17	30	42	10	1.82
64025491--64025557	20	3.3	21	89	8	104	35	11	17	34	1.87
64025502--64025557	11	5.5	11	71	16	57	35	12	17	33	1.88
64025607--64025663	23	2.4	24	91	5	89	29	19	22	28	1.98
64033519--64033585	20	3.3	20	93	4	109	34	11	19	34	1.88
64033530--64033585	11	5.5	11	71	16	57	33	12	19	33	1.89
64033635--64033715	24	3.4	24	89	3	119	33	17	20	28	1.95
64033635--64033729	47	2.0	48	85	8	131	31	18	21	28	1.97
64036903--64037206	47	6.4	47	91	1	419	34	7	29	27	1.85
64039720--64039778	28	2.1	28	93	0	100	44	27	5	23	1.74
64044037--64044298	40	6.6	40	87	3	307	26	28	20	24	1.99
64044037--64044298	119	2.2	119	82	4	314	26	28	20	24	1.99
64044037--64044298	79	3.3	79	84	4	307	26	28	20	24	1.99
64051975--64052236	40	6.6	40	87	3	316	26	27	20	24	1.99
64058080--64058314	29	8.2	30	83	7	310	27	32	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64058080--64058314	115	2.0	115	87	6	334	27	32	12	27	1.93
64073626--64073806	29	6.3	29	81	6	192	26	32	13	28	1.94
64073626--64073806	58	3.2	57	86	3	249	26	32	13	28	1.94
64073873--64073910	19	2.1	18	85	14	51	13	42	15	28	1.85
64075977--64076369	199	2.0	200	95	0	707	35	21	6	36	1.80
64081665--64081761	42	2.3	42	76	0	104	32	16	22	27	1.96
64084969--64085069	27	3.7	27	83	0	103	21	14	21	41	1.89
64085103--64085138	18	2.0	18	100	0	72	38	16	11	33	1.84
64093861--64094036	50	3.5	49	85	3	199	30	27	17	25	1.97
64093861--64094044	101	1.8	99	84	2	251	29	27	17	25	1.98
64094843--64094907	31	2.1	31	100	0	130	41	15	15	27	1.87
64095782--64095813	16	2.0	17	88	11	50	31	12	25	31	1.92
64098870--64098992	43	2.9	41	84	4	156	25	17	25	32	1.96
64099708--64099750	11	4.1	10	82	11	59	18	0	27	53	1.45
64099711--64099751	22	1.9	21	95	5	73	17	0	29	53	1.44
64101028--64101069	20	2.1	20	100	0	84	35	19	21	23	1.96
64107730--64108001	49	5.7	46	76	11	205	22	30	19	27	1.98
64107832--64108001	91	1.8	94	83	7	231	21	31	19	27	1.97
64107730--64108004	139	2.0	142	84	7	364	22	30	19	27	1.98
64111948--64112059	40	2.8	40	88	0	170	25	19	29	25	1.99
64120020--64120090	38	1.9	37	86	11	101	25	18	30	25	1.98
64191471--64191690	40	5.6	40	89	3	313	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64191471--64191690	79	2.8	80	86	4	313	25	25	23	25	2.00
64195084--64195191	41	2.6	41	82	7	121	26	23	25	24	2.00
64202650--64202949	40	7.8	39	83	10	273	27	20	26	26	1.99
64202794--64202849	29	1.9	29	100	0	112	28	17	25	28	1.98
64202756--64202889	69	1.9	69	90	3	216	28	19	24	27	1.99
64202823--64202975	80	1.9	79	82	6	193	26	20	26	27	1.99
64211279--64211500	40	5.6	40	91	1	331	25	27	22	24	2.00
64227662--64227796	68	2.0	68	82	5	166	37	20	22	20	1.95
64228246--64228276	14	2.2	14	100	0	62	35	19	22	22	1.96
64228731--64228766	18	2.0	18	94	0	63	36	5	36	22	1.78
64232163--64232197	18	1.9	18	88	0	52	62	5	8	22	1.45
64233079--64233266	104	1.8	104	85	2	270	27	10	25	37	1.89
64233098--64233266	52	3.2	52	83	0	221	27	11	24	37	1.89
64233476--64233528	27	2.0	25	89	7	79	24	16	18	39	1.91
64233708--64233746	17	2.3	17	90	0	60	15	15	35	33	1.89
64236848--64236910	31	2.0	31	93	0	108	36	11	20	31	1.88
64239544--64239603	30	2.0	30	100	0	120	36	6	20	36	1.79
64240670--64240737	15	4.5	15	83	0	82	14	14	16	54	1.72
64248140--64248199	25	2.4	25	100	0	120	46	26	13	13	1.80
64248187--64248252	20	3.2	20	79	12	80	43	21	21	13	1.86
64248188--64248251	22	3.0	22	82	8	80	43	20	21	14	1.87
64256313--64256342	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64279420--64279514	42	2.3	42	94	0	163	23	41	23	12	1.88
64280447--64280477	15	2.1	15	100	0	62	48	6	19	25	1.72
64303729--64303913	40	4.7	40	79	6	189	26	28	21	24	1.99
64303729--64303913	79	2.3	80	78	7	189	26	28	21	24	1.99
64307653--64307714	28	2.2	29	88	2	90	27	11	32	29	1.91
64309145--64309233	45	2.0	45	82	8	110	22	12	14	50	1.76
64309634--64309802	46	3.6	46	81	7	166	21	31	17	28	1.96
64315962--64316002	21	1.9	22	85	5	57	24	26	36	12	1.91
64320605--64320673	26	2.7	26	95	0	120	21	28	26	23	1.99
64323902--64323949	25	1.9	25	86	0	69	33	20	14	31	1.93
64324082--64324152	26	2.8	25	89	4	106	25	23	22	28	2.00
64324119--64324179	25	2.5	24	84	10	70	27	22	21	27	1.99
64324372--64324486	31	3.7	31	94	1	187	33	18	25	23	1.97
64326591--64326738	43	3.4	43	81	1	136	31	25	14	28	1.94
64328192--64328247	27	2.1	27	90	6	87	64	7	5	23	1.40
64328988--64329036	6	8.0	6	78	13	55	48	16	16	18	1.81
64328964--64329036	31	2.4	31	88	0	101	47	12	19	20	1.81
64329154--64329232	26	3.0	26	80	5	88	39	20	22	17	1.92
64329391--64329455	22	3.0	21	73	13	60	32	23	24	20	1.98
64329883--64330395	27	19.0	27	85	0	614	24	20	18	36	1.94
64330387--64330900	27	19.6	27	76	11	358	30	9	19	39	1.85
64329887--64330402	81	6.4	81	89	2	734	25	20	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64330533--64330768	123	1.9	123	84	6	318	32	10	17	39	1.84
64330468--64330847	203	1.9	203	84	6	511	31	10	18	40	1.84
64330423--64330849	230	1.9	229	90	0	692	30	10	18	40	1.84
64334124--64334300	40	4.4	40	89	2	259	24	24	24	25	2.00
64337106--64337139	17	2.1	16	88	5	50	23	2	0	73	0.97
64337101--64337160	29	2.1	29	84	3	77	25	6	0	68	1.14
64344540--64344580	13	3.2	13	100	0	82	21	31	29	17	1.96
64346381--64346432	27	2.0	27	85	7	72	57	9	9	23	1.60
64347600--64347706	55	1.9	55	82	16	132	49	8	1	40	1.44
64348495--64348523	11	2.5	12	94	5	51	24	0	0	75	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352