genome.fa.s11.2.7.7.80.10.50.1000.349.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A11
Parameters: 2 7 7 80 10 50 1000
Length:  113101708

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   

This is table  349  of  352  ( 42160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111850964--111851006	21	2.0	22	95	4	79	41	9	20	27	1.83
111852284--111852317	17	2.0	17	88	0	50	29	0	14	55	1.40
111854681--111854726	24	2.0	23	83	12	58	45	2	4	47	1.34
111862530--111862569	21	2.0	21	90	5	64	32	22	25	20	1.98
111874761--111874941	82	2.2	81	77	9	181	32	6	3	56	1.43
111876781--111876819	14	2.7	15	84	8	62	51	12	12	23	1.74
111882441--111882481	21	2.0	21	90	0	64	19	29	21	29	1.98
111893549--111893592	22	2.0	22	100	0	88	27	18	9	45	1.79
111894774--111894820	21	2.2	22	92	3	78	21	38	19	21	1.94
111902245--111902460	107	2.0	108	96	0	398	42	8	5	43	1.59
111903583--111903613	16	1.9	16	93	0	53	54	6	0	38	1.26
111913756--111913785	15	2.0	15	93	0	51	13	10	0	76	1.01
111914205--111914279	39	1.9	39	88	0	114	46	4	24	25	1.69
111914762--111914810	24	2.0	26	84	8	66	40	2	4	53	1.32
111916065--111916116	22	2.4	22	81	12	54	50	17	1	30	1.57
111917329--111917380	10	5.1	11	84	11	67	71	1	5	21	1.17
111919482--111919544	10	6.3	10	73	12	58	39	0	0	60	0.97
111919486--111919529	20	2.3	19	92	7	72	34	0	0	65	0.93
111919471--111919551	31	2.5	32	82	13	96	44	0	0	55	0.99
111919487--111919541	20	2.7	19	78	10	65	32	0	0	67	0.91
111920603--111920664	31	2.0	31	100	0	124	25	6	29	38	1.81
111934913--111934954	21	2.0	21	86	9	59	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111936749--111936800	27	2.0	27	85	10	74	53	3	3	38	1.37
111947423--111947453	3	10.3	3	92	0	53	29	0	3	67	1.06
111948177--111948219	17	2.4	18	76	7	52	37	0	0	62	0.95
111949395--111949526	62	2.1	62	80	5	142	37	3	15	43	1.63
111951132--111951157	2	13.0	2	100	0	52	50	0	0	50	1.00
111960346--111960411	32	2.1	30	83	5	78	46	7	4	40	1.52
111973423--111973450	2	14.0	2	100	0	56	0	0	50	50	1.00
111975937--111975975	19	2.0	19	90	5	60	71	7	0	20	1.10
111976064--111976092	12	2.5	12	94	5	51	58	6	6	27	1.50
111976566--111976617	24	2.2	24	86	6	70	46	3	5	44	1.45
111980679--111980749	20	3.6	19	75	7	61	45	2	5	46	1.41
111986003--111986042	20	1.9	20	85	10	53	62	2	5	30	1.29
111987736--111987904	89	1.9	87	80	11	193	40	7	11	40	1.70
111989397--111989471	29	2.5	29	80	4	78	32	6	14	46	1.71
111990179--111990214	16	2.2	17	90	5	56	33	0	0	66	0.92
112000739--112000778	21	1.9	21	84	0	53	37	0	2	60	1.11
112011943--112012033	36	2.5	37	83	5	123	30	20	14	34	1.93
112011943--112012036	18	5.2	18	78	0	98	30	20	14	34	1.93
112019706--112019841	72	1.9	72	92	3	229	26	27	12	33	1.92
112022738--112022852	51	2.3	51	86	3	151	40	9	18	32	1.83
112023102--112023301	90	2.2	90	83	5	235	37	19	10	34	1.85
112023407--112023458	10	5.2	10	74	6	52	25	3	0	71	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112023403--112023448	19	2.5	19	78	3	58	28	6	0	65	1.17
112023545--112023598	26	2.1	26	92	0	90	38	0	0	61	0.96
112025387--112025524	51	2.7	51	77	6	129	40	9	18	31	1.82
112026045--112026428	130	2.9	131	78	5	389	31	16	20	30	1.95
112029238--112029289	25	2.1	25	96	0	95	23	25	7	44	1.79
112029641--112029717	14	5.0	15	72	20	61	44	14	7	33	1.74
112029657--112029696	20	2.0	20	90	0	62	50	12	10	27	1.72
112029645--112029711	34	1.9	35	93	3	118	47	13	7	31	1.70
112030188--112030243	17	3.4	16	83	9	60	23	5	1	69	1.18
112030260--112030308	21	2.3	21	80	16	57	34	4	0	61	1.15
112038519--112038609	32	2.8	32	76	17	98	40	3	14	41	1.62
112038978--112039004	3	9.0	3	100	0	54	0	33	0	66	0.92
112045601--112045718	18	6.0	20	87	11	149	33	16	21	28	1.94
112045601--112045718	40	3.0	38	79	18	150	33	16	21	28	1.94
112049630--112049683	23	2.5	20	78	18	63	31	3	20	44	1.69
112054771--112054824	23	2.5	20	78	18	63	31	3	20	44	1.69
112058426--112058515	38	2.3	38	78	1	99	18	25	28	26	1.98
112058454--112058531	38	2.1	38	90	0	120	17	23	28	30	1.97
112072514--112072576	31	2.1	30	81	3	72	41	1	9	47	1.45
112074384--112074423	21	1.9	21	84	0	53	37	5	2	55	1.35
112074661--112074702	13	2.9	14	80	13	50	54	0	0	45	0.99
112074665--112074701	16	2.3	16	86	13	58	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112075916--112075941	13	2.0	13	100	0	52	38	7	23	30	1.83
112082562--112082587	8	3.2	8	100	0	52	0	11	0	88	0.52
112085677--112085702	11	2.4	11	100	0	52	84	0	0	15	0.62
112098542--112098582	20	2.1	19	90	4	64	29	9	36	24	1.87
112099636--112099705	20	3.3	20	73	21	54	54	4	0	41	1.20
112104462--112104494	17	1.9	18	88	11	52	66	12	9	12	1.44
112110735--112110776	19	2.3	19	79	4	50	14	28	2	54	1.52
112120011--112120050	16	2.4	18	80	12	50	35	0	7	57	1.27
112134972--112135045	32	2.4	30	80	10	87	27	1	6	64	1.26
112136152--112136362	102	2.1	102	87	1	298	36	12	12	39	1.80
112144843--112145232	209	1.9	207	86	2	557	20	13	16	49	1.79
112145591--112145631	21	2.0	21	95	0	73	36	29	21	12	1.90
112150772--112150916	60	2.4	60	95	0	254	40	8	17	34	1.79
112160456--112160517	32	1.9	32	93	6	108	24	6	27	41	1.79
112161256--112161284	13	2.2	13	100	0	58	6	6	13	72	1.26
112161436--112161509	15	4.8	15	73	22	64	62	0	2	35	1.10
112161446--112161512	21	3.5	20	68	27	65	62	0	1	35	1.04
112161445--112161525	35	2.3	35	95	4	146	60	0	2	37	1.10
112166379--112166443	18	3.4	18	89	6	85	32	7	0	60	1.25
112166550--112166622	30	2.5	30	80	8	87	30	12	2	54	1.51
112166657--112166737	27	2.7	30	80	16	96	39	9	3	46	1.55
112173300--112173819	88	5.9	88	92	1	796	27	22	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112175433--112175497	18	3.4	18	89	6	85	32	7	0	60	1.25
112175604--112175676	30	2.5	30	80	8	87	30	12	2	54	1.51
112175714--112175797	10	8.5	10	68	12	57	40	9	3	46	1.54
112178563--112178779	39	5.6	39	91	1	328	37	23	27	11	1.90
112178579--112178779	77	2.6	78	91	0	323	38	23	26	11	1.89
112183133--112183179	10	4.4	10	86	10	58	34	0	2	63	1.06
112183135--112183177	21	2.0	23	86	9	63	34	0	2	62	1.08
112184217--112184322	55	1.9	55	98	0	203	35	24	3	35	1.74
112190561--112190641	31	2.7	32	79	7	89	33	6	3	56	1.42
112195563--112195602	21	2.0	20	85	5	53	30	2	0	67	1.04
112198643--112198711	33	2.1	33	97	0	129	24	10	21	43	1.83
112202863--112202910	21	2.3	20	78	3	51	50	10	2	37	1.49
112204841--112204888	20	2.4	19	83	13	60	39	4	2	54	1.32
112208173--112208544	186	2.0	186	92	2	622	20	19	16	42	1.89
112213185--112213239	18	3.1	18	91	0	83	30	20	14	34	1.92
112218911--112218963	21	2.5	22	84	3	63	26	1	1	69	1.09
112220848--112220872	11	2.3	11	100	0	50	52	16	12	20	1.75
112221636--112221683	21	2.3	20	78	3	51	50	10	2	37	1.49
112222236--112222294	31	1.9	31	86	10	86	30	13	10	45	1.76
112222234--112222300	31	2.2	29	80	12	82	29	11	8	49	1.70
112222775--112223142	186	2.0	186	94	2	641	22	19	16	42	1.89
112225439--112225874	147	2.9	147	87	2	613	37	10	16	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112229904--112229990	43	2.0	43	95	0	156	43	11	16	28	1.82
112232924--112232983	30	2.0	30	100	0	120	33	16	26	23	1.96
112234277--112234309	17	1.9	17	100	0	66	36	0	24	39	1.56
112236353--112236379	12	2.2	12	100	0	54	48	14	7	29	1.71
112239343--112239371	6	4.8	6	100	0	58	0	17	0	82	0.66
112241139--112241220	30	2.6	31	74	16	89	28	4	2	64	1.26
112241482--112241538	30	1.9	30	82	7	71	42	0	5	52	1.24
112242158--112242318	84	1.9	84	85	0	223	27	25	29	17	1.97
112246603--112246655	24	2.2	24	83	6	63	52	5	0	41	1.25
112249275--112249548	92	2.9	93	89	2	397	21	14	17	46	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352