genome.fa.s8.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  109  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35916141--35916329	21	9.2	20	68	22	76	33	5	0	59	1.25
35916139--35916206	18	3.7	18	73	21	61	32	1	2	63	1.18
35916261--35916332	24	2.9	27	74	16	82	33	4	0	62	1.14
35916145--35916323	8	23.1	8	65	20	60	33	6	0	59	1.26
35916298--35916375	43	1.9	41	87	10	115	35	5	0	58	1.20
35916528--35916571	22	2.0	22	83	12	56	29	6	6	56	1.51
35924992--35925114	46	2.6	48	84	2	160	27	18	30	23	1.98
35928429--35928496	24	2.8	24	86	0	82	44	13	14	27	1.83
35935363--35935409	20	2.3	21	88	3	69	8	21	0	70	1.14
35935379--35935442	6	10.3	6	75	18	60	6	15	1	76	1.06
35935371--35935440	12	5.8	12	73	14	54	7	17	1	74	1.11
35938532--35938643	43	2.6	43	97	0	206	29	33	25	11	1.91
35938641--35938715	38	2.0	38	86	0	105	34	25	17	22	1.96
35942738--35942854	46	2.6	45	78	8	121	45	11	9	33	1.73
35944800--35944834	3	11.7	3	93	0	61	65	0	2	31	1.07
35945477--35945508	16	2.0	16	93	0	55	46	0	0	53	1.00
35949433--35949627	93	2.1	92	88	4	286	44	4	4	47	1.41
35949660--35949711	17	3.2	17	76	18	56	44	3	1	50	1.31
35949705--35949891	61	3.1	61	68	16	190	41	2	6	49	1.42
35949753--35949787	18	2.0	17	88	5	52	40	0	0	60	0.97
35949702--35949920	119	1.8	119	96	1	395	42	2	5	48	1.39
35949872--35949922	18	3.0	18	78	18	56	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35949860--35950131	144	1.9	147	93	3	478	47	2	2	46	1.32
35950016--35950050	18	2.0	17	88	5	52	45	0	0	54	0.99
35950212--35950306	45	2.1	45	88	1	138	32	27	5	34	1.79
35950285--35950317	16	2.1	16	94	0	57	30	36	0	33	1.58
35950298--35950340	21	2.0	21	95	0	77	34	37	0	27	1.57
35955425--35955534	27	3.9	28	85	4	107	29	12	25	32	1.93
35955425--35955521	27	3.5	27	88	2	122	26	13	27	31	1.94
35955453--35955535	27	3.0	27	89	3	112	30	12	24	33	1.91
35955425--35955535	56	2.0	56	80	7	127	28	12	25	33	1.92
36035140--36035320	40	4.6	40	90	2	267	25	25	23	25	2.00
36038940--36039050	41	2.7	41	85	1	150	23	2	23	50	1.62
36040105--36040136	14	2.4	13	90	10	55	62	12	6	18	1.50
36040496--36040520	13	1.9	13	100	0	50	20	40	24	16	1.91
36042632--36042698	35	1.9	35	90	0	107	52	17	13	16	1.75
36042676--36042752	33	2.3	33	82	4	84	51	20	11	15	1.74
36044577--36044651	37	2.0	37	92	0	123	50	10	9	29	1.68
36047022--36047073	24	2.2	24	89	0	77	55	9	1	32	1.43
36048992--36049043	24	2.2	24	89	0	77	55	9	1	32	1.43
36050963--36051014	24	2.2	24	89	0	77	55	9	1	32	1.43
36051719--36051746	14	2.0	14	100	0	56	35	14	7	42	1.73
36056568--36056630	31	2.1	29	82	5	72	36	7	1	53	1.40
36058741--36058774	3	11.3	3	93	0	59	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36059196--36059282	43	2.0	43	100	0	174	35	4	20	39	1.73
36065832--36065887	27	2.1	27	93	0	94	35	17	3	42	1.67
36069478--36069562	44	1.9	44	92	0	143	30	29	21	18	1.97
36069488--36069597	44	2.5	44	85	5	134	33	29	20	17	1.95
36073535--36073583	21	2.3	21	96	0	89	61	6	4	28	1.38
36077477--36077509	2	16.5	2	100	0	66	51	0	48	0	1.00
36086623--36086747	62	2.0	62	89	3	189	37	21	16	24	1.93
36090164--36090317	42	3.6	42	73	11	136	31	24	14	29	1.95
36096147--36096203	15	3.9	15	86	2	80	49	12	1	36	1.51
36097526--36097559	8	4.2	8	100	0	68	61	0	0	38	0.96
36100273--36100372	50	2.0	50	86	0	137	28	17	28	27	1.97
36100570--36100599	16	1.9	15	93	6	51	43	0	23	33	1.54
36102537--36102787	39	6.4	40	91	4	377	24	22	27	25	2.00
36102537--36102787	79	3.2	79	90	2	373	24	22	27	25	2.00
36105404--36105441	16	2.4	16	100	0	76	42	0	15	42	1.47
36105601--36105931	145	2.3	143	82	6	391	24	29	19	26	1.98
36105601--36105908	95	3.2	95	88	3	438	24	30	20	25	1.98
36105552--36105931	50	7.8	49	78	9	359	23	29	19	26	1.98
36106219--36106262	21	2.1	21	100	0	88	45	13	13	27	1.81
36116833--36116914	24	3.4	24	75	0	83	31	23	26	18	1.97
36120101--36120187	42	2.1	42	100	0	174	41	11	24	22	1.87
36121776--36121808	10	3.3	10	91	0	57	39	15	33	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36123559--36123880	46	6.8	48	73	14	226	23	29	19	27	1.98
36123561--36123879	94	3.4	96	76	11	295	23	29	19	26	1.98
36123561--36123831	138	1.9	140	83	9	345	23	30	19	25	1.98
36123561--36123880	140	2.2	142	80	9	350	23	29	19	27	1.98
36129601--36129647	21	2.2	21	88	0	67	34	12	25	27	1.92
36135656--36135763	30	3.8	28	75	14	96	65	0	29	4	1.12
36136812--36136855	19	2.4	18	85	7	54	40	9	0	50	1.34
36137871--36138035	56	2.9	56	86	1	242	33	23	13	29	1.93
36145341--36145781	47	9.4	47	90	0	675	32	8	31	28	1.87
36168813--36168952	46	3.0	46	94	3	255	29	12	15	42	1.83
36169754--36169956	45	4.6	44	84	4	259	26	21	26	26	2.00
36169772--36169967	88	2.2	87	87	5	270	27	21	27	23	1.99
36170500--36170532	16	1.9	18	88	11	52	24	15	12	48	1.78
36178877--36179033	43	3.7	43	72	7	131	26	21	22	29	1.99
36184355--36184386	15	2.0	17	88	11	50	25	0	31	43	1.55
36190063--36190116	22	2.5	22	72	6	56	40	0	14	44	1.46
36192200--36192312	29	4.0	29	90	3	176	23	14	32	29	1.94
36192201--36192312	57	2.0	57	91	3	181	24	14	33	28	1.94
36193349--36193382	18	1.9	18	88	5	52	41	11	17	29	1.85
36200129--36200159	15	2.1	15	93	0	53	16	0	45	38	1.47
36206530--36206572	18	2.4	18	84	7	52	41	18	20	18	1.90
36206906--36206996	27	3.4	27	90	6	141	23	17	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36206880--36206996	54	2.2	54	84	9	150	23	17	17	41	1.89
36206989--36207275	27	10.7	27	87	1	353	37	14	17	30	1.89
36206998--36207261	133	2.0	133	89	0	402	38	14	17	29	1.90
36213068--36213101	16	2.2	16	89	5	52	50	14	8	26	1.72
36218083--36218200	43	2.8	42	76	10	132	29	24	15	30	1.95
36219778--36219970	6	31.3	6	75	18	148	49	15	16	18	1.79
36219778--36219970	19	10.4	18	72	18	148	49	15	16	18	1.79
36219792--36219970	37	4.8	37	79	9	147	49	15	16	18	1.80
36219792--36219907	25	4.7	25	76	15	100	50	16	16	17	1.79
36219903--36219966	25	2.6	25	82	0	74	50	15	15	18	1.79
36219804--36219969	62	2.7	62	88	0	242	50	15	16	18	1.79
36220110--36220173	33	2.0	32	84	3	83	34	20	25	20	1.96
36220486--36220626	27	5.2	27	85	2	131	25	19	18	36	1.94
36220485--36220619	54	2.5	54	85	0	171	24	20	19	36	1.95
36220474--36220626	81	1.9	81	84	2	191	26	17	20	35	1.95
36220675--36220951	27	10.3	27	80	6	147	32	8	19	40	1.81
36220636--36220793	81	2.0	81	79	5	176	30	8	23	37	1.84
36220719--36220951	27	8.6	27	85	0	304	32	8	18	40	1.80
36222786--36222833	24	2.0	24	95	0	87	25	10	20	43	1.83
36230205--36230235	16	1.9	16	93	0	53	35	22	0	41	1.54
36230202--36230241	20	2.0	20	85	0	53	37	22	0	40	1.54
36230486--36230618	53	2.5	53	82	4	160	22	24	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36230486--36230681	55	3.6	52	77	9	162	22	25	16	35	1.94
36237940--36237970	16	1.9	16	93	0	53	35	22	0	41	1.54
36237937--36237976	20	2.0	20	85	0	53	37	22	0	40	1.54
36238049--36238093	23	1.9	24	90	4	74	22	24	11	42	1.86
36240820--36240932	27	4.2	26	86	8	145	36	23	23	16	1.94
36240820--36240932	55	2.1	54	88	5	165	36	23	23	16	1.94
36248276--36248453	27	6.6	27	84	3	205	29	28	15	26	1.96
36248297--36248452	82	1.9	81	88	3	233	29	28	15	26	1.96
36276568--36276776	35	5.6	37	80	14	227	27	28	21	22	1.99
36276568--36276780	113	1.9	112	86	9	308	27	27	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362