genome.fa.s8.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  126  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41672149--41672221	31	2.3	32	81	9	87	34	15	27	23	1.94
41672846--41672923	27	2.9	27	81	11	72	25	28	12	33	1.93
41675817--41675860	22	2.0	22	100	0	88	50	13	0	36	1.42
41676946--41677086	57	2.4	59	80	9	139	32	17	20	29	1.95
41678566--41678605	21	1.9	21	85	10	55	42	10	10	37	1.72
41681719--41681765	21	2.2	21	96	0	85	23	25	4	46	1.70
41681723--41681766	11	4.0	12	75	19	51	22	25	6	45	1.77
41686683--41686750	32	2.1	32	94	0	118	36	26	1	35	1.66
41688361--41688677	47	6.7	47	92	0	492	32	8	29	28	1.87
41688799--41688871	37	2.0	37	88	0	110	21	20	30	27	1.98
41690721--41691061	40	8.6	40	85	3	363	24	21	27	25	1.99
41693549--41693818	47	5.7	47	94	0	461	33	8	29	28	1.87
41693936--41694014	37	2.1	37	90	0	122	25	20	29	25	1.99
41705483--41705527	23	2.0	23	90	0	72	11	20	26	42	1.85
41706259--41706296	19	2.0	19	100	0	76	31	5	15	47	1.68
41711647--41711684	9	4.6	8	84	15	51	63	0	0	36	0.95
41712709--41712802	48	2.0	48	100	0	188	34	13	25	26	1.94
41731158--41731192	13	2.5	14	90	9	54	42	14	11	31	1.81
41732551--41732627	38	2.0	39	97	2	147	44	14	10	31	1.79
41737654--41738011	180	2.0	180	87	2	513	33	19	8	38	1.82
41738553--41738991	50	8.8	50	75	7	342	30	25	18	25	1.98
41738553--41738797	101	2.4	100	81	2	285	28	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41738557--41738945	145	2.6	148	87	3	534	30	25	18	25	1.98
41754790--41754961	93	1.8	93	81	4	213	29	30	19	21	1.97
41759724--41759835	27	4.2	25	82	12	116	37	22	24	16	1.93
41759724--41759835	54	2.1	54	86	3	154	37	22	24	16	1.93
41761249--41761295	24	2.0	24	86	0	67	21	38	2	38	1.65
41767534--41767629	27	3.6	26	80	10	95	42	21	20	14	1.88
41767534--41767646	54	2.1	53	85	6	147	39	23	22	15	1.91
41767559--41767646	27	3.2	27	84	7	115	37	25	22	14	1.92
41773018--41773120	36	2.9	34	76	12	91	60	21	4	13	1.52
41777408--41777432	13	1.9	13	100	0	50	64	24	4	8	1.38
41780879--41780995	31	3.8	31	89	1	173	23	26	17	32	1.96
41781215--41781284	25	2.8	25	100	0	140	27	21	24	27	1.99
41783295--41783336	21	2.0	21	81	9	50	45	11	7	35	1.69
41789323--41789482	51	3.2	50	91	1	248	29	23	15	32	1.95
41794725--41794772	17	3.1	17	69	27	52	35	2	0	62	1.07
41794729--41794850	11	11.4	11	72	20	57	34	3	0	62	1.12
41794769--41794795	14	1.9	14	100	0	54	29	7	0	62	1.22
41794763--41794851	9	9.3	9	68	20	56	32	3	0	64	1.10
41794812--41794854	13	3.5	13	87	6	63	30	0	0	69	0.88
41794763--41794844	21	4.0	20	73	16	69	32	3	0	63	1.12
41794800--41794857	15	4.1	14	80	10	64	32	0	0	67	0.91
41794804--41794855	19	2.8	20	75	13	58	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41806876--41806903	14	2.0	14	100	0	56	42	14	0	42	1.45
41807249--41807324	40	1.9	40	86	0	107	30	22	15	31	1.95
41809931--41810113	79	2.3	81	82	7	214	24	22	27	25	2.00
41809931--41810115	40	4.7	40	82	6	216	24	22	28	25	1.99
41812766--41812823	20	2.9	20	81	0	80	12	25	37	24	1.90
41815147--41815256	48	2.3	48	91	0	175	31	16	25	26	1.96
41815290--41815414	49	2.6	49	86	0	178	28	20	27	24	1.99
41818034--41818197	80	2.0	80	100	0	328	32	15	10	40	1.83
41823267--41823390	47	2.6	47	90	0	203	28	28	19	24	1.98
41828007--41828128	42	2.9	41	83	7	147	29	25	14	30	1.95
41828008--41828128	43	2.9	42	82	7	138	28	25	14	30	1.95
41829134--41829168	17	1.9	18	88	11	54	25	14	5	54	1.62
41830117--41830186	30	2.3	30	92	0	122	22	34	22	20	1.97
41836247--41836297	21	2.4	22	93	6	88	50	5	3	39	1.45
41838035--41838131	30	3.2	30	75	2	97	29	25	14	29	1.95
41841119--41841150	8	4.0	8	91	0	55	3	25	21	50	1.64
41844160--41844332	46	3.7	46	77	11	174	22	19	27	30	1.98
41844157--41844327	93	1.8	93	88	2	263	22	19	28	29	1.98
41844557--41844594	19	2.0	20	85	15	53	36	0	23	39	1.55
41851723--41851895	46	3.7	46	79	10	208	21	20	27	29	1.98
41851720--41851890	93	1.8	93	93	0	297	21	21	28	28	1.98
41852120--41852157	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41855064--41855130	32	2.1	32	100	0	134	40	11	14	32	1.83
41860701--41860816	42	2.7	42	77	15	121	33	22	17	26	1.96
41866902--41867146	48	5.1	48	97	0	445	35	6	27	30	1.81
41867293--41867401	37	2.9	37	93	0	182	22	19	30	27	1.98
41870486--41870527	11	4.1	10	80	14	50	52	28	0	19	1.46
41871266--41871387	43	2.9	42	82	7	147	31	23	18	26	1.97
41878084--41878125	21	1.9	23	85	9	61	45	28	0	26	1.54
41878151--41878192	11	4.1	10	80	14	50	50	28	0	21	1.49
41880490--41880651	42	3.8	42	73	16	111	32	26	17	23	1.97
41883098--41883132	17	1.9	19	88	11	56	51	8	11	28	1.67
41886111--41886214	53	2.0	53	84	0	136	21	24	18	36	1.95
41886126--41886251	53	2.3	53	79	2	135	19	22	19	38	1.94
41910664--41910709	22	2.1	22	100	0	92	26	4	21	47	1.69
41910675--41910723	22	2.2	22	82	7	55	32	4	24	38	1.74
41919920--41920015	42	2.3	42	82	7	115	32	15	22	29	1.95
41920395--41920424	15	1.9	16	93	6	53	13	6	23	56	1.60
41921432--41921587	43	3.7	43	77	6	149	26	20	25	27	1.99
41921429--41921587	85	1.9	85	85	5	223	26	20	25	27	1.99
41927802--41927974	46	3.7	46	80	13	219	21	21	28	28	1.98
41927799--41927969	93	1.8	93	96	0	315	21	21	29	28	1.98
41935351--41935523	46	3.7	46	80	13	219	21	21	28	28	1.98
41935348--41935518	93	1.8	93	96	0	315	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41943685--41943780	47	2.0	47	93	0	165	32	22	10	34	1.88
41944977--41945019	22	2.0	21	81	4	50	25	34	11	27	1.91
41952788--41952944	30	5.3	29	69	9	102	36	12	25	25	1.91
41952779--41952978	89	2.2	90	83	2	242	38	13	24	24	1.91
41952932--41953005	30	2.5	29	73	6	76	45	9	22	21	1.80
41952817--41953033	90	2.4	89	80	3	222	37	13	24	23	1.92
41956529--41956672	24	6.0	24	92	0	234	27	20	22	29	1.98
41956722--41956760	20	2.0	20	100	0	78	30	20	12	35	1.90
41956723--41956767	20	2.2	20	92	0	72	31	22	13	33	1.92
41956804--41956850	24	1.9	25	86	4	69	25	14	23	36	1.93
41959653--41959898	49	5.0	49	81	3	285	28	26	19	25	1.98
41959674--41959898	101	2.3	97	82	4	270	28	27	18	24	1.98
41960145--41960198	27	2.0	27	85	0	72	38	14	5	40	1.70
41964946--41964994	18	2.6	20	75	15	59	65	0	26	8	1.20
41965100--41965148	15	3.1	15	88	5	62	61	0	26	12	1.31
41966843--41966940	38	2.6	38	78	4	99	31	9	12	46	1.72
41975118--41975267	28	5.3	28	84	10	157	30	12	32	25	1.93
41975138--41975267	57	2.3	56	84	9	165	30	13	31	24	1.93
41975275--41975311	18	2.1	18	100	0	74	24	5	21	48	1.71
41975617--41975643	13	2.1	13	100	0	54	44	29	0	25	1.54
41977025--41977194	43	4.0	43	74	6	164	31	27	17	23	1.97
41983988--41984095	42	2.6	42	84	0	135	34	11	19	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986482--41986528	21	2.4	19	82	10	58	27	2	23	46	1.63
41991215--41991340	46	2.7	45	79	9	128	30	19	26	23	1.98
41991359--41991488	50	2.6	50	83	6	167	26	18	31	23	1.97
41992976--41993033	25	2.3	25	82	5	73	22	22	20	34	1.97
41993188--41993239	26	2.0	26	85	7	70	40	5	17	36	1.73
42000578--42000720	52	2.8	51	90	4	227	25	13	30	30	1.94
42000579--42000751	52	3.4	52	85	4	185	26	15	29	28	1.96
42013680--42013850	46	3.7	46	71	14	145	23	17	28	30	1.97
42013673--42013843	93	1.8	93	87	5	256	23	18	27	29	1.98
42015766--42015879	27	4.2	28	81	6	119	21	20	20	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362