genome.fa.s8.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  155  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50848552--50848720	92	1.8	92	92	2	286	28	28	20	21	1.98
50848551--50848717	45	3.7	45	79	10	196	28	28	20	22	1.98
50848549--50848736	45	4.1	45	71	20	131	28	28	20	22	1.98
50849133--50849191	30	2.0	29	86	3	82	30	25	6	37	1.82
50851136--50851189	18	3.0	18	80	0	63	46	11	20	22	1.82
50851529--50851606	27	2.9	27	78	0	93	35	17	17	28	1.94
50855896--50856120	49	4.5	49	83	3	263	25	17	26	30	1.97
50855896--50856127	99	2.3	101	82	3	274	25	17	26	30	1.97
50858341--50858492	43	3.5	43	76	8	130	32	21	21	25	1.98
50867443--50867541	42	2.3	42	79	5	110	31	24	19	25	1.98
50872839--50873142	47	6.4	47	91	1	428	33	8	30	27	1.86
50886546--50886642	30	3.2	30	79	2	106	30	15	25	27	1.96
50886984--50887058	33	2.3	33	81	6	82	24	22	14	38	1.92
50887575--50887613	21	1.9	20	94	5	69	46	20	0	33	1.51
50888885--50888909	13	1.9	13	100	0	50	32	4	24	40	1.73
50890065--50890185	43	2.8	43	84	2	154	26	18	24	30	1.98
50892673--50892849	91	1.9	91	94	0	309	22	17	23	36	1.94
50893856--50893880	13	1.9	13	100	0	50	32	4	24	40	1.73
50896553--50896580	14	2.0	14	100	0	56	14	7	35	42	1.73
50899491--50899579	34	2.6	34	80	3	90	29	25	19	25	1.98
50902487--50902667	40	4.6	40	81	8	192	26	28	22	23	1.99
50902487--50902667	79	2.3	80	79	10	201	26	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50907263--50907342	27	3.0	28	81	7	94	42	15	16	26	1.87
50909000--50909038	20	2.0	20	89	0	60	17	28	23	30	1.97
50915479--50915536	21	2.7	21	81	2	62	68	3	22	5	1.24
50918754--50918969	39	5.5	39	92	1	344	28	28	23	18	1.98
50924416--50924604	27	7.0	27	85	1	200	35	17	20	25	1.95
50924805--50924892	27	3.3	26	87	4	113	18	20	22	38	1.93
50925010--50925134	6	20.3	6	65	16	51	19	20	14	46	1.84
50925041--50925108	19	3.6	19	71	11	68	17	22	16	44	1.87
50925019--50925125	37	2.9	37	76	4	108	17	21	14	45	1.85
50926577--50926608	8	4.0	8	95	0	55	50	15	25	9	1.74
50927023--50927106	27	3.2	26	88	5	114	19	23	21	35	1.96
50943434--50943649	27	8.0	27	86	3	283	33	18	21	26	1.96
50943851--50943970	28	4.4	28	93	4	201	19	20	23	36	1.95
50943867--50943994	28	4.7	26	91	3	112	21	22	19	35	1.96
50944112--50944229	6	19.3	6	76	13	116	19	18	13	48	1.81
50944112--50944220	49	2.2	49	91	0	173	19	19	12	48	1.80
50944146--50944227	43	1.9	43	89	0	128	18	19	13	48	1.80
50947182--50947365	40	4.6	40	82	6	196	23	20	27	28	1.99
50947182--50947362	80	2.3	81	83	9	221	23	20	27	27	1.99
50947263--50947412	40	3.8	38	80	10	131	25	22	28	24	1.99
50955023--50955206	40	4.6	40	82	6	196	23	20	27	28	1.99
50955023--50955203	80	2.3	81	83	9	221	23	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50955104--50955253	40	3.8	38	80	10	131	25	22	28	24	1.99
50963070--50963164	46	2.1	46	91	0	154	29	7	23	40	1.81
50967439--50967473	16	2.2	16	89	0	52	71	2	2	22	1.13
50979651--50979757	48	2.3	46	85	3	133	26	23	23	27	2.00
50983100--50983304	38	4.9	38	70	18	131	32	23	12	30	1.92
50983145--50983278	48	2.8	48	86	1	171	33	22	12	31	1.91
50990152--50990351	44	4.6	43	78	3	170	22	18	24	35	1.96
50990251--50990355	43	2.5	43	87	1	149	24	18	25	31	1.97
50992924--50993032	42	2.6	43	78	7	116	24	27	22	25	2.00
51011435--51011684	55	4.7	54	80	10	259	35	16	26	22	1.95
51011438--51011640	108	1.9	110	88	4	313	32	17	26	23	1.97
51012140--51012173	14	2.6	14	90	9	54	38	0	8	52	1.33
51014790--51014947	38	4.1	38	80	9	169	23	21	24	31	1.99
51014806--51014984	38	4.7	38	80	5	155	21	20	24	32	1.97
51015945--51015975	16	1.9	16	93	0	53	41	0	22	35	1.54
51047288--51047424	46	3.0	46	90	0	202	24	31	10	34	1.89
51047398--51047729	47	7.1	47	90	0	477	26	29	10	33	1.90
51053869--51053956	28	3.1	28	90	0	131	30	32	13	22	1.93
51053940--51054033	40	2.3	40	90	0	143	35	28	14	21	1.93
51053937--51054042	40	2.6	39	81	8	124	33	29	15	21	1.94
51055320--51055361	18	2.3	18	84	12	50	16	42	30	9	1.80
51074413--51074452	7	5.3	7	91	8	53	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51074420--51074466	17	2.5	20	80	16	57	63	2	0	34	1.06
51075081--51075127	19	2.4	19	76	20	51	36	23	4	36	1.75
51078928--51079084	46	3.4	46	78	14	171	22	29	20	26	1.98
51081118--51081329	40	5.3	40	88	3	268	24	20	27	27	1.99
51087371--51087635	40	6.7	40	88	4	358	26	27	21	24	1.99
51087371--51087635	119	2.2	121	85	4	360	26	27	21	24	1.99
51092645--51092852	40	5.2	40	89	3	267	24	19	27	28	1.99
51097553--51097610	17	3.2	17	90	7	80	72	5	18	3	1.18
51098851--51099091	43	5.6	43	94	0	365	26	15	25	32	1.95
51100284--51100403	42	2.8	43	80	7	129	27	25	20	26	1.99
51113119--51113188	33	2.1	34	83	2	88	22	24	22	30	1.99
51116127--51116199	27	2.7	27	87	4	103	35	19	16	28	1.93
51116181--51116298	27	4.7	27	74	16	117	42	22	6	27	1.79
51116220--51116326	54	2.0	54	88	0	160	41	21	7	29	1.80
51116225--51116323	27	3.7	27	84	0	117	43	22	7	27	1.79
51116250--51116421	27	6.4	27	74	9	129	39	17	14	28	1.89
51116307--51116421	26	4.3	26	77	9	117	39	15	17	27	1.90
51116625--51116682	24	2.4	25	78	16	68	31	18	22	27	1.97
51117925--51118011	40	2.2	40	89	0	129	36	26	14	21	1.93
51122104--51122200	30	3.2	30	71	8	90	27	15	28	27	1.96
51124411--51124493	30	2.7	30	81	9	89	13	21	1	63	1.35
51124444--51124499	18	3.1	18	76	5	51	7	19	3	69	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51124469--51124493	12	2.1	12	100	0	50	8	16	0	76	1.02
51124496--51124526	12	2.6	12	94	0	53	25	19	9	45	1.81
51124605--51124636	12	2.8	12	90	9	50	0	15	6	78	0.95
51124607--51124647	21	1.9	22	85	5	57	2	14	7	75	1.12
51129456--51129538	30	2.7	30	81	9	89	13	21	1	63	1.35
51129489--51129544	18	3.1	18	76	5	51	7	19	3	69	1.27
51129514--51129538	12	2.1	12	100	0	50	8	16	0	76	1.02
51129619--51129681	5	12.0	5	78	21	51	4	17	3	74	1.12
51132228--51132324	30	3.2	30	70	8	81	27	14	29	27	1.95
51132389--51132413	9	2.8	9	100	0	50	12	20	44	24	1.85
51132708--51132807	21	5.0	21	66	22	63	39	22	26	13	1.90
51132690--51132829	39	3.6	39	88	1	201	37	23	26	12	1.91
51133996--51134037	21	2.0	21	85	0	57	45	16	9	28	1.79
51137471--51137574	19	5.2	21	68	13	85	42	18	25	14	1.88
51137453--51137592	39	3.6	39	86	0	190	39	20	25	14	1.90
51138272--51138302	16	1.9	16	93	0	53	54	16	0	29	1.42
51139787--51140011	112	2.0	112	94	0	396	25	8	20	45	1.80
51141687--51141880	50	3.9	49	81	6	221	27	28	18	24	1.98
51141698--51141884	101	1.9	99	87	4	277	28	29	17	24	1.97
51144225--51144269	20	2.2	20	80	7	56	33	4	6	55	1.46
51144277--51144303	13	2.1	13	100	0	54	29	14	0	55	1.40
51150676--51150993	40	8.0	40	93	0	512	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51153503--51153596	48	2.0	48	93	0	161	22	14	30	31	1.94
51166884--51167056	46	3.7	46	77	13	201	21	21	27	28	1.99
51166881--51167051	93	1.8	93	93	0	297	21	22	28	27	1.99
51174531--51174582	27	2.0	26	88	3	77	36	21	25	17	1.94
51176178--51176229	27	2.0	26	88	3	77	36	21	25	17	1.94
51178473--51178526	27	2.0	27	85	3	74	35	20	22	22	1.96
51178529--51178618	27	3.3	27	87	3	110	26	21	16	35	1.94
51178516--51178618	54	1.9	54	82	4	127	28	19	20	32	1.97
51181719--51181775	20	2.8	20	81	0	69	15	15	36	31	1.90
51183067--51183383	47	6.7	46	70	15	179	24	29	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362