genome.fa.s8.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  99  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32048323--32048398	27	2.8	25	77	13	80	30	7	22	39	1.82
32048313--32048404	27	3.4	26	75	11	78	30	8	21	39	1.84
32053242--32053435	47	4.1	47	90	0	280	31	11	30	26	1.91
32053271--32053342	22	3.1	22	64	24	58	33	13	29	23	1.93
32053405--32053545	48	2.9	48	97	0	264	34	6	28	30	1.82
32053686--32053794	37	2.9	37	95	0	191	22	19	31	26	1.98
32057940--32057986	23	2.0	23	95	0	85	31	14	17	36	1.90
32067310--32067348	20	2.0	19	85	5	51	51	5	10	33	1.58
32068535--32068693	68	2.3	69	78	8	171	20	28	15	35	1.93
32070377--32070558	40	4.6	40	92	2	278	22	26	23	27	2.00
32078376--32078557	40	4.6	40	93	2	287	21	26	23	27	1.99
32089061--32089212	43	3.5	43	80	2	126	25	19	25	30	1.98
32092853--32092891	21	1.9	20	89	5	60	46	20	0	33	1.51
32096846--32096890	15	2.9	15	81	12	54	53	17	13	15	1.73
32099175--32099391	40	5.5	40	87	4	289	26	23	27	22	1.99
32107118--32107271	40	3.9	40	92	0	256	26	23	27	22	1.99
32112404--32112588	40	4.7	40	82	6	216	26	28	21	23	1.99
32112404--32112588	79	2.3	81	80	8	209	26	28	21	23	1.99
32115297--32115563	40	6.7	40	95	0	480	21	28	20	29	1.98
32124111--32124377	40	6.7	40	95	0	480	21	28	20	29	1.98
32133707--32133764	24	2.4	23	78	16	55	46	1	3	48	1.29
32133799--32133875	23	3.1	24	75	17	59	40	2	9	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32135857--32135917	26	2.3	26	82	2	68	29	26	13	31	1.93
32135872--32135924	26	2.1	25	89	3	79	28	22	16	32	1.96
32140634--32140735	40	2.5	40	93	0	168	23	21	28	26	1.99
32144217--32144283	32	2.1	32	97	0	125	35	11	11	40	1.79
32150501--32150560	29	2.1	28	84	3	75	31	26	0	41	1.56
32152585--32152644	29	2.1	28	84	3	75	31	26	0	41	1.56
32153343--32153382	20	2.1	19	85	4	53	40	7	5	47	1.54
32167937--32168204	104	2.6	105	93	1	450	29	30	20	18	1.97
32168532--32168595	30	2.2	29	81	10	76	29	28	6	35	1.82
32168539--32168595	30	1.9	30	85	3	80	29	24	7	38	1.82
32173396--32173580	79	2.3	81	84	7	236	24	22	27	25	2.00
32173397--32173580	40	4.6	40	83	9	216	24	22	27	25	2.00
32173397--32173613	79	2.7	79	81	7	201	25	22	27	24	2.00
32175598--32175675	24	3.4	24	66	10	72	35	10	23	30	1.88
32175593--32175684	45	2.0	45	100	0	184	35	11	23	28	1.91
32181314--32181498	40	4.6	39	83	6	212	24	22	27	25	2.00
32181314--32181498	79	2.3	81	84	7	236	24	22	27	25	2.00
32181315--32181521	79	2.6	78	81	9	206	25	21	27	25	1.99
32184643--32184692	24	2.1	23	82	10	57	8	16	0	76	1.02
32190230--32190277	24	2.0	24	100	0	96	25	0	20	54	1.45
32192519--32192673	39	4.0	39	93	0	256	25	20	27	27	1.99
32196979--32197035	30	1.9	30	92	0	96	33	14	24	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32197377--32197742	47	7.7	46	74	9	258	28	21	28	21	1.99
32197377--32197725	142	2.5	138	83	7	391	29	21	27	21	1.99
32198575--32198609	13	2.7	13	100	0	70	22	31	37	8	1.85
32198520--32198647	68	1.9	68	90	0	202	20	23	31	25	1.98
32201949--32202054	26	4.2	25	83	9	135	33	6	22	37	1.80
32203548--32203639	25	3.6	25	95	1	157	41	20	15	22	1.90
32209040--32209146	26	4.2	26	91	2	180	32	6	24	36	1.81
32209040--32209146	51	2.1	52	94	1	189	32	6	24	36	1.81
32210636--32210685	26	1.9	26	84	8	66	40	22	14	24	1.90
32215185--32215210	13	2.0	13	100	0	52	7	0	30	61	1.24
32229175--32229224	26	1.9	26	84	15	68	32	10	16	42	1.81
32234527--32234552	13	2.0	13	100	0	52	7	0	30	61	1.24
32239603--32239750	42	3.5	42	79	7	165	29	17	22	29	1.97
32243833--32243858	6	4.3	6	100	0	52	34	0	50	15	1.45
32248673--32248773	40	2.5	40	93	1	168	24	23	25	25	2.00
32255908--32255943	2	18.0	2	94	0	63	0	52	0	47	1.00
32264373--32264502	40	3.3	40	88	3	156	26	26	20	26	1.99
32266967--32267248	50	5.8	47	76	11	221	28	19	26	24	1.99
32273093--32273167	36	2.1	35	97	2	141	48	13	5	33	1.65
32279103--32279431	48	6.8	48	86	1	408	27	28	17	26	1.98
32283080--32283842	378	2.0	377	95	0	1384	32	23	19	24	1.98
32284903--32285010	43	2.5	43	74	5	112	30	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32296873--32296932	31	2.0	30	87	6	86	61	1	1	35	1.16
32296873--32296931	29	2.0	29	83	9	75	61	1	1	35	1.16
32300215--32300262	25	1.9	25	95	0	87	12	20	35	31	1.90
32300137--32300501	102	3.6	102	94	2	601	19	20	29	30	1.97
32307160--32307211	26	2.0	26	92	0	86	13	21	34	30	1.92
32307082--32307450	103	3.6	103	93	2	598	19	19	29	30	1.97
32313383--32313598	46	4.7	46	76	13	158	29	20	29	21	1.98
32315434--32315611	27	6.6	27	82	3	196	26	15	27	30	1.96
32315435--32315590	82	1.9	81	86	3	224	26	15	27	30	1.96
32315431--32315611	82	2.2	81	82	2	220	27	15	27	30	1.96
32323368--32323545	27	6.6	27	83	3	205	26	15	28	29	1.96
32323369--32323524	82	1.9	81	88	3	233	26	15	28	29	1.96
32323365--32323545	82	2.2	81	83	2	229	27	15	27	29	1.96
32324894--32324929	17	2.1	17	94	0	63	33	22	5	38	1.77
32330303--32330490	70	2.6	69	85	9	198	18	17	32	31	1.94
32334962--32335115	27	5.7	27	86	4	159	29	29	14	27	1.95
32334962--32335115	53	2.9	54	82	4	168	29	29	14	27	1.95
32334962--32335126	55	3.1	53	84	4	188	29	29	15	26	1.96
32344216--32344365	41	3.7	40	82	14	164	24	20	26	28	1.99
32344257--32344410	41	3.7	42	82	10	156	24	22	28	24	1.99
32344215--32344410	41	4.8	39	80	11	155	24	20	27	27	1.99
32354861--32355070	40	5.3	39	86	5	228	28	27	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32354881--32355069	79	2.4	80	84	5	215	27	28	20	23	1.99
32362974--32363165	40	4.8	40	89	1	208	28	27	20	23	1.99
32362973--32363164	80	2.4	80	85	3	244	28	27	20	23	1.99
32364907--32365076	46	3.6	48	77	13	167	28	17	29	24	1.97
32369332--32369372	20	2.0	20	100	0	82	14	29	12	43	1.82
32380172--32380227	25	2.2	26	80	6	60	60	3	5	30	1.36
32380828--32380862	18	1.9	18	88	0	52	37	5	5	51	1.50
32396019--32396050	16	2.0	16	93	0	55	53	0	9	37	1.34
32400980--32401035	25	2.2	26	79	17	73	62	1	1	33	1.16
32401144--32401185	21	2.0	20	86	13	59	21	9	47	21	1.79
32415755--32415781	12	2.2	12	100	0	54	48	25	0	25	1.52
32415693--32415857	88	1.9	88	98	0	321	22	26	21	29	1.99
32416663--32416888	94	2.4	92	87	5	312	23	28	18	28	1.98
32416665--32416885	47	4.7	48	76	10	217	23	28	18	28	1.98
32421619--32421677	24	2.3	26	80	5	68	54	0	5	40	1.23
32421687--32421748	30	2.1	30	84	6	81	61	3	1	33	1.22
32421703--32421738	16	2.2	16	95	0	63	66	0	2	30	1.06
32425681--32425718	19	2.0	19	100	0	76	31	26	10	31	1.90
32427281--32427389	45	2.4	45	84	0	146	36	14	21	27	1.92
32433201--32433258	15	3.9	15	73	8	55	13	12	17	56	1.66
32435976--32436104	46	2.8	46	90	0	177	19	17	29	33	1.95
32449772--32449811	21	1.9	21	94	0	71	10	42	30	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32450334--32450487	75	2.1	75	94	0	272	35	25	1	37	1.64
32454530--32454608	37	2.1	37	86	4	106	26	30	17	25	1.97
32454727--32455216	47	10.4	47	94	1	829	29	29	8	32	1.87
32454727--32455216	143	3.5	141	94	1	838	29	29	8	32	1.87
32458552--32458603	25	2.0	25	88	3	77	28	32	7	30	1.85
32458782--32458961	40	4.5	39	84	5	193	25	26	22	25	2.00
32459278--32459356	29	2.7	29	86	5	106	27	32	15	24	1.95
32461249--32461327	37	2.1	37	88	4	115	25	30	18	25	1.98
32461446--32461933	47	10.4	47	95	0	834	29	29	8	32	1.87
32467140--32467401	54	4.9	54	85	3	321	24	23	16	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362