genome.fa.s8.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  191  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63693887--63693985	28	3.5	28	83	0	90	28	12	34	25	1.92
63706705--63706898	47	4.1	47	88	0	262	35	9	27	27	1.88
63706734--63706805	22	3.1	22	64	24	58	33	13	29	23	1.93
63706869--63707004	50	2.8	47	82	8	173	36	5	26	30	1.80
63706863--63707025	50	3.3	48	77	15	154	33	6	28	31	1.83
63707151--63707259	37	2.9	37	93	0	182	23	19	30	26	1.98
63709262--63709336	28	2.7	29	87	6	109	21	14	36	28	1.93
63714990--63715021	15	2.1	15	94	0	55	53	21	12	12	1.71
63718606--63718779	59	2.9	59	90	1	269	30	29	16	23	1.96
63721790--63721906	47	2.5	46	81	8	130	30	16	27	25	1.96
63725511--63725643	40	3.3	40	83	3	151	25	21	23	29	1.99
63728402--63728489	27	3.3	27	85	4	108	21	23	18	36	1.95
63728547--63728854	27	11.3	27	77	8	149	32	8	20	38	1.82
63728607--63728758	81	1.9	82	86	4	218	26	6	22	44	1.77
63728605--63728759	27	5.7	26	82	8	150	26	6	22	44	1.77
63728607--63728798	82	2.3	80	80	7	215	28	6	22	42	1.79
63728788--63728908	27	4.5	27	92	0	179	42	9	21	26	1.84
63728843--63728925	27	3.1	27	91	0	76	38	9	21	30	1.86
63828421--63828463	16	2.7	16	100	0	86	51	23	18	6	1.70
63828970--63829036	20	3.3	20	91	0	107	32	11	22	32	1.90
63829088--63829205	23	5.1	23	87	6	166	27	19	20	33	1.97
63831577--63831787	40	5.3	40	87	2	302	24	27	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63836598--63836678	29	2.9	28	83	7	92	27	28	14	29	1.95
63838364--63838595	117	2.0	117	100	0	464	37	11	21	30	1.88
63839741--63839846	41	2.6	40	86	1	140	25	14	28	32	1.94
63839834--63839934	28	3.7	27	86	1	130	25	11	32	29	1.92
63839887--63839945	28	2.1	28	83	0	73	27	13	30	28	1.94
63842888--63842929	19	2.2	19	91	0	66	47	9	21	21	1.79
63847096--63847210	31	3.7	31	94	1	196	28	26	16	28	1.97
63847234--63847325	42	2.2	42	96	0	166	32	20	16	30	1.95
63847473--63847542	25	2.8	25	86	4	97	25	24	25	24	2.00
63848460--63848512	27	2.0	27	84	0	70	35	13	15	35	1.86
63848469--63848603	27	4.9	27	77	10	85	31	7	18	42	1.78
63848531--63848683	27	5.7	27	80	4	148	30	6	19	43	1.76
63848557--63848716	81	2.0	81	80	9	184	30	10	18	41	1.83
63848719--63848885	81	2.1	81	86	4	230	39	7	24	28	1.82
63848719--63848885	27	6.2	27	84	2	194	39	7	24	28	1.82
63848722--63848871	54	2.8	53	88	7	214	40	6	23	30	1.79
63852806--63853028	40	5.6	40	95	0	383	24	21	26	27	1.99
63858283--63858422	37	3.8	37	95	0	235	24	31	19	25	1.98
63858563--63858903	48	7.0	48	93	1	556	31	27	5	34	1.81
63864700--63864883	39	4.6	39	83	5	210	25	22	27	25	2.00
63864701--63864915	79	2.7	78	82	7	204	26	21	27	24	1.99
63867356--63867577	40	5.6	40	90	1	340	23	22	25	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63882832--63882856	7	3.6	7	100	0	50	16	52	0	32	1.44
63907311--63907422	39	2.9	39	89	0	161	28	17	27	25	1.98
63914463--63914512	25	2.0	25	100	0	100	32	8	28	32	1.86
63915331--63915422	39	2.4	39	88	0	130	27	21	29	21	1.99
63917196--63917276	42	1.9	43	82	7	103	24	17	23	34	1.96
63936247--63936279	14	2.2	16	89	10	52	24	3	18	54	1.57
63941834--63941934	42	2.4	43	81	5	125	29	18	20	30	1.97
63941834--63941952	43	2.8	42	75	15	111	27	18	23	30	1.98
63942479--63942524	23	2.0	24	86	4	67	17	2	28	52	1.56
63942954--63942988	12	2.9	12	95	0	61	17	40	31	11	1.85
63948534--63948563	15	2.0	15	100	0	60	20	60	6	13	1.55
63953175--63953395	46	4.8	46	79	6	241	21	19	28	30	1.97
63974272--63974444	46	3.7	46	78	13	210	21	21	27	28	1.99
63974269--63974439	93	1.8	93	96	0	315	21	21	28	28	1.99
63977380--63977483	24	4.4	23	76	9	86	24	21	20	34	1.96
63978575--63978615	20	2.0	20	95	0	73	14	17	41	26	1.88
63980831--63980996	86	1.9	86	93	0	287	30	20	20	28	1.98
63985052--63985116	28	2.3	28	84	10	80	32	23	13	30	1.93
63990307--63990360	20	2.8	19	79	17	58	66	5	3	24	1.29
63996446--63996506	24	2.6	24	80	12	72	77	0	11	11	1.01
63996465--63996511	17	2.7	17	83	3	58	80	0	10	8	0.89
64003287--64003328	22	1.9	22	95	0	75	7	21	21	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64004850--64004909	23	2.6	24	82	12	65	71	6	6	15	1.28
64008756--64008780	11	2.3	11	100	0	50	60	8	0	32	1.26
64015037--64015097	24	2.5	24	78	2	68	70	1	3	24	1.11
64015050--64015089	19	2.2	18	86	4	53	75	2	0	22	0.93
64020350--64020409	19	3.2	19	79	9	70	68	1	1	28	1.09
64020348--64020410	9	6.9	9	77	19	60	65	1	1	31	1.12
64025777--64025858	37	2.2	37	91	0	128	40	15	8	35	1.78
64025893--64025968	33	2.3	33	97	0	143	43	15	5	35	1.70
64028988--64029970	121	8.2	119	97	1	1693	43	3	5	47	1.43
64028988--64029970	239	4.1	239	96	1	1704	43	3	5	47	1.43
64029919--64029953	18	2.0	17	88	5	52	45	0	0	54	0.99
64030118--64030208	45	2.0	45	85	2	121	37	28	6	27	1.82
64030189--64030257	16	4.2	16	92	3	120	36	37	1	24	1.65
64030189--64030257	33	2.1	32	94	2	120	36	37	1	24	1.65
64032083--64032173	19	4.9	19	88	8	143	39	9	14	36	1.79
64032083--64032196	19	5.8	22	84	10	78	38	8	14	37	1.78
64032465--64032498	18	1.9	17	88	5	50	29	0	0	70	0.87
64034153--64034359	53	3.8	53	78	5	200	37	18	23	20	1.94
64037036--64037064	12	2.3	13	94	5	51	48	3	0	48	1.18
64038465--64038553	45	2.0	45	86	8	128	55	1	0	43	1.07
64038415--64038580	57	2.9	57	83	9	196	56	0	1	42	1.11
64038480--64038554	24	3.2	24	70	14	68	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64038565--64038620	21	2.7	21	100	0	112	64	0	3	32	1.11
64054410--64054479	34	2.1	34	100	0	140	45	17	8	28	1.77
64055350--64055501	43	3.5	43	81	3	189	32	26	15	25	1.96
64061482--64061589	26	4.2	26	93	0	189	36	24	7	32	1.83
64063754--64063944	48	4.0	48	80	2	213	18	17	28	36	1.93
64063757--64063942	96	1.9	96	84	2	248	18	17	28	36	1.93
64066099--64066132	14	2.5	13	86	9	50	47	0	8	44	1.34
64070301--64070376	39	1.9	39	100	0	152	32	13	18	35	1.89
64077725--64077749	13	1.9	13	100	0	50	16	28	40	16	1.89
64093867--64094182	46	6.7	48	75	12	221	27	18	30	23	1.98
64109348--64109408	30	2.0	30	83	0	77	39	8	22	29	1.83
64110033--64110285	68	3.9	64	76	13	230	29	16	29	24	1.97
64126739--64126763	13	1.9	13	100	0	50	4	48	24	24	1.68
64133523--64133617	47	2.0	47	93	0	163	17	16	22	43	1.88
64135600--64135632	14	2.5	13	90	9	57	60	12	15	12	1.59
64136067--64136113	20	2.3	21	79	17	55	2	31	19	46	1.61
64136483--64136593	43	2.6	43	82	0	132	31	18	16	34	1.93
64137276--64137313	19	2.0	19	100	0	76	36	21	10	31	1.87
64142963--64143080	43	2.7	43	88	3	175	33	21	14	31	1.93
64151921--64152142	40	5.6	40	87	2	288	23	25	25	25	2.00
64154774--64154919	27	5.4	27	92	0	211	26	21	10	41	1.85
64154850--64154954	54	1.9	54	82	0	129	33	17	6	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64154921--64155074	54	2.9	54	87	4	197	42	19	9	29	1.82
64154948--64155156	54	3.9	53	80	7	199	43	19	8	29	1.79
64154915--64155098	80	2.3	80	82	4	228	43	19	7	29	1.78
64154916--64155162	27	9.1	27	78	7	171	41	18	8	31	1.80
64155203--64155280	27	2.9	27	77	11	88	37	21	20	20	1.95
64156441--64156488	25	1.9	25	91	0	78	35	25	14	25	1.94
64156527--64156583	9	5.9	9	73	15	51	35	8	21	35	1.84
64156525--64156595	20	3.5	20	92	0	115	35	9	21	33	1.86
64156642--64156832	25	7.8	25	94	1	293	26	20	24	28	1.99
64157053--64157116	31	2.1	31	84	0	83	40	12	23	23	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362