genome.fa.s8.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  204  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68896240--68896292	24	2.2	24	93	0	88	22	30	16	30	1.96
68901710--68901747	8	4.8	8	96	0	67	50	0	0	50	1.00
68901750--68901800	19	2.7	19	75	6	59	37	0	0	62	0.95
68901716--68901800	38	2.3	37	85	2	107	42	1	0	56	1.07
68901716--68901824	38	2.9	38	78	6	98	43	0	0	55	1.12
68911103--68911225	46	2.7	44	83	7	149	22	27	20	29	1.98
68911149--68911282	46	2.9	46	83	4	153	20	28	20	30	1.98
68912027--68912051	13	1.9	13	100	0	50	64	16	4	16	1.44
68913928--68913963	15	2.5	14	86	8	54	66	0	11	22	1.22
68915209--68915291	24	3.5	24	83	0	103	24	12	27	36	1.91
68921886--68921921	15	2.5	14	86	8	54	66	0	11	22	1.22
68929642--68929921	38	6.9	38	75	14	238	32	23	13	30	1.93
68929657--68929888	85	2.7	84	91	2	383	32	23	13	30	1.93
68929734--68929975	123	2.0	123	91	0	394	31	23	14	30	1.94
68929890--68930011	47	2.6	47	86	1	172	30	21	16	31	1.95
68942140--68942210	1	71.0	1	72	0	52	2	11	0	85	0.69
68942140--68942209	12	5.5	12	83	12	95	2	11	0	85	0.69
68942142--68942216	19	3.9	18	80	17	89	4	12	0	84	0.76
68942137--68942216	39	2.1	39	88	9	119	3	12	0	83	0.77
68942140--68942216	13	5.8	13	80	7	93	3	11	0	84	0.75
68998360--68998419	30	2.0	30	86	0	84	40	8	23	28	1.83
69005591--69005736	43	3.5	42	77	10	158	31	23	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69005663--69005735	38	1.9	38	94	0	128	35	26	12	26	1.91
69010601--69010688	28	3.2	28	90	3	126	38	20	22	18	1.93
69011915--69011966	18	3.2	17	73	15	56	63	0	32	3	1.12
69015032--69015128	28	3.5	28	91	0	149	37	21	24	16	1.94
69016806--69017106	48	6.4	48	78	6	317	35	27	11	25	1.91
69016778--69017106	24	13.9	24	72	12	243	35	27	12	25	1.91
69016864--69016904	20	2.0	20	90	0	64	36	29	14	19	1.92
69016807--69017105	96	3.2	95	94	1	505	35	27	12	25	1.91
69017533--69017564	16	2.0	16	93	0	55	56	15	0	28	1.40
69020087--69020238	27	5.6	27	93	3	241	30	28	13	26	1.94
69020087--69020238	55	2.8	55	94	0	259	30	28	13	26	1.94
69028069--69028220	27	5.6	27	93	3	241	30	28	13	26	1.94
69028069--69028220	55	2.8	55	94	0	259	30	28	13	26	1.94
69037785--69037975	47	4.1	47	90	0	283	34	9	28	27	1.89
69037829--69037953	25	5.2	24	62	24	59	32	11	28	27	1.91
69037854--69037928	22	3.3	22	66	23	64	32	13	29	25	1.93
69037789--69038021	94	2.5	94	85	4	301	34	10	28	26	1.89
69039995--69040338	48	7.3	48	78	7	366	36	26	11	25	1.90
69039967--69040336	24	15.8	23	68	15	107	36	26	11	25	1.90
69040038--69040338	96	3.2	91	91	5	428	36	26	11	25	1.90
69039996--69040242	136	1.8	136	89	3	390	36	27	11	25	1.90
69040120--69040339	24	9.2	24	69	15	125	37	25	11	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69040766--69040797	16	2.0	16	93	0	55	56	15	0	28	1.40
69042736--69042792	18	3.2	18	75	7	62	64	0	31	3	1.10
69043799--69043830	3	10.7	3	93	0	55	68	3	0	28	1.04
69044671--69044800	43	3.0	43	82	10	158	30	26	19	23	1.98
69046192--69046250	28	2.1	28	100	0	118	42	25	0	32	1.55
69048677--69048709	16	2.0	17	88	5	50	9	24	39	27	1.85
69049296--69049339	21	2.2	19	92	8	70	29	31	29	9	1.88
69050411--69050685	46	5.9	47	77	8	242	24	30	18	26	1.98
69050412--69050680	47	5.7	47	77	9	223	24	30	18	26	1.98
69050421--69050680	140	1.9	140	85	3	362	24	29	18	27	1.98
69053860--69054051	40	4.8	40	90	2	253	25	30	21	21	1.99
69062216--69062404	79	2.4	80	83	4	231	25	29	22	22	1.99
69062216--69062406	40	4.8	41	88	3	239	25	29	21	22	1.99
69080819--69081138	46	7.0	46	92	0	498	22	24	15	38	1.92
69086244--69086427	49	3.7	49	83	2	242	26	20	26	27	1.99
69086235--69086422	100	1.9	100	95	0	340	25	20	26	27	1.99
69087758--69087854	43	2.3	43	77	8	101	26	21	25	25	2.00
69092623--69092804	49	3.7	49	82	2	220	28	25	20	25	1.99
69092610--69092794	100	1.9	100	91	0	307	28	24	20	26	1.99
69094569--69094596	14	2.0	14	100	0	56	50	7	21	21	1.72
69095321--69095487	67	2.5	65	81	7	167	31	17	29	21	1.96
69095277--69095528	68	3.8	63	77	10	197	29	16	29	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69099650--69099695	22	2.1	22	100	0	92	19	17	8	54	1.68
69099721--69099769	24	2.0	25	96	4	91	32	12	10	44	1.75
69101628--69101860	49	4.7	49	78	5	218	30	26	18	25	1.98
69104008--69104122	44	2.7	43	80	12	130	23	21	27	26	1.99
69110596--69110686	6	14.8	6	74	17	80	47	15	18	18	1.83
69110605--69110702	31	3.2	31	92	0	160	46	13	19	20	1.83
69110852--69110953	27	3.8	26	85	5	105	37	22	21	18	1.94
69111112--69111173	22	2.8	23	82	7	74	33	20	22	22	1.97
69111603--69111770	27	6.3	27	79	7	173	25	19	20	34	1.96
69111752--69112047	27	11.0	26	76	8	89	33	7	20	39	1.80
69111810--69112041	54	4.3	53	80	4	232	32	6	19	40	1.78
69111864--69112041	81	2.2	81	89	2	241	34	6	18	40	1.77
69111888--69112041	27	5.7	27	86	3	202	34	5	19	40	1.76
69113981--69114046	6	10.8	6	73	15	55	45	13	19	21	1.85
69113981--69114037	12	4.7	12	79	12	62	47	12	19	21	1.81
69113990--69114069	31	2.5	31	85	2	106	48	11	18	21	1.79
69114206--69114307	27	3.8	26	88	5	132	36	21	23	18	1.95
69114957--69115124	27	6.3	27	79	7	155	26	20	19	32	1.97
69114957--69115124	54	3.1	54	77	12	175	26	20	19	32	1.97
69115107--69115503	27	14.7	27	79	4	331	32	7	20	39	1.80
69115144--69115503	81	4.4	81	81	4	377	32	7	19	40	1.80
69115217--69115503	54	5.3	54	87	1	369	32	6	19	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69122243--69122293	26	1.9	27	84	4	68	13	7	17	60	1.56
69133433--69133747	48	6.7	44	76	12	147	25	18	30	25	1.98
69133478--69133748	48	5.7	47	77	14	229	25	18	30	25	1.98
69133428--69133749	96	3.4	95	75	14	283	25	18	30	24	1.98
69133386--69133748	194	1.9	187	82	7	453	26	18	30	25	1.98
69133342--69133749	95	4.3	96	74	15	300	26	19	29	24	1.98
69137331--69137505	46	3.8	46	78	13	196	29	30	20	20	1.97
69137339--69137509	93	1.8	93	92	0	288	28	30	21	19	1.98
69138064--69138100	20	1.9	18	89	10	56	35	21	0	43	1.53
69140909--69141075	46	3.7	44	82	9	176	23	29	20	25	1.99
69140912--69141126	92	2.3	90	78	5	207	23	30	19	26	1.98
69140912--69141120	46	4.6	44	75	11	154	22	30	19	27	1.98
69143853--69144027	46	3.8	46	77	10	176	29	29	20	21	1.98
69143861--69144031	93	1.8	93	88	0	261	29	29	20	21	1.98
69143858--69144047	46	4.1	45	70	18	113	29	28	20	21	1.98
69144586--69144622	20	1.9	18	89	10	56	35	21	0	43	1.53
69150146--69150395	46	5.4	46	74	13	153	29	18	27	24	1.98
69163773--69163948	46	3.8	46	77	14	200	21	19	28	30	1.97
69163770--69163940	93	1.8	93	92	2	290	21	19	28	29	1.98
69170500--69170678	27	6.6	27	85	2	205	26	14	28	30	1.95
69170500--69170678	55	3.3	55	84	3	227	26	14	28	30	1.95
69170501--69170657	82	1.9	82	88	2	235	26	14	28	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69170497--69170678	82	2.2	82	83	1	231	26	14	28	30	1.95
69174308--69174364	27	2.1	27	96	3	107	28	14	28	29	1.95
69178483--69178660	27	6.6	27	84	3	205	26	14	28	29	1.95
69178483--69178660	54	3.3	55	84	4	227	26	14	28	29	1.95
69185242--69185271	15	2.0	15	93	0	51	50	6	23	20	1.71
69193971--69194015	23	2.0	22	91	4	72	28	13	28	28	1.94
69196991--69197062	37	1.9	37	100	0	144	36	19	18	26	1.94
69199123--69199156	13	2.6	13	100	0	68	64	11	17	5	1.45
69200762--69200811	13	3.8	13	94	0	91	20	40	26	14	1.90
69211315--69211415	39	2.6	39	82	3	123	23	26	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362