Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  336  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111956944--111956977
16
2.1
16
89
10
52
35
8
0
55
1.31
111959366--111959401
3
12.0
3
100
0
72
33
0
0
66
0.92
111959559--111959585
3
9.0
3
100
0
54
33
0
0
66
0.92
111967649--111967694
23
2.0
23
84
12
60
45
10
6
36
1.65
111967656--111967700
23
2.0
23
82
8
56
40
13
8
37
1.76
111970638--111970946
126
2.5
126
92
0
510
39
15
17
27
1.90
111973989--111974365
129
2.9
130
94
2
652
55
5
4
34
1.42
111974470--111974521
21
2.5
22
78
12
65
5
21
46
26
1.74
111975414--111975446
7
4.7
7
100
0
66
57
15
0
27
1.38
111976597--111976659
21
3.0
22
81
6
67
46
4
23
25
1.72
111976627--111976668
20
2.0
22
86
9
61
42
0
30
26
1.55
111978875--111978917
20
2.3
19
88
8
61
51
0
0
48
1.00
111980853--111980906
24
2.2
24
83
6
65
59
5
0
35
1.21
111984535--111984577
23
1.9
23
90
4
70
44
9
4
41
1.57
111984533--111984584
22
2.3
23
80
3
70
51
9
3
34
1.53
111985605--111985645
17
2.4
18
84
12
59
4
29
7
58
1.46
111993951--111994047
33
2.8
35
74
20
98
46
2
1
50
1.20
111994229--111994260
13
2.5
13
89
0
55
34
25
6
34
1.81
111994983--111995015
15
2.2
15
100
0
66
24
0
18
57
1.40
111996686--111996733
11
4.4
11
79
7
53
25
4
0
70
1.04
111996747--111996791
20
2.2
21
81
18
60
35
0
8
55
1.31
111996747--111996796
19
2.5
20
84
15
61
32
0
8
60
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111997601--111997840
120
2.0
119
88
0
354
31
17
15
35
1.92
112003351--112003377
10
2.7
10
100
0
54
48
0
0
51
1.00
112004948--112005082
39
3.4
39
76
8
123
23
20
27
28
1.99
112008304--112008403
49
2.0
49
98
0
191
22
21
12
45
1.84
112017796--112017833
15
2.6
15
87
4
51
10
5
0
84
0.77
112017796--112017834
14
2.7
14
88
11
53
10
5
0
84
0.76
112021677--112021713
18
2.1
18
100
0
74
37
16
10
35
1.83
112033936--112034017
41
2.0
41
97
0
155
31
23
7
37
1.82
112036272--112036318
21
2.2
22
92
3
78
21
38
19
21
1.94
112041110--112041172
29
2.2
29
77
11
67
7
33
0
58
1.27
112048402--112049215
177
4.6
177
78
9
781
32
17
23
26
1.97
112051366--112051394
9
3.2
9
100
0
58
44
0
0
55
0.99
112052937--112053016
41
1.9
42
87
7
119
21
32
25
21
1.98
112053745--112053770
6
4.3
6
100
0
52
50
15
15
19
1.79
112056945--112056996
23
2.3
22
78
15
52
28
1
0
69
0.99
112060821--112060852
13
2.3
15
89
10
50
78
0
0
21
0.76
112061172--112061218
6
7.5
6
86
9
67
14
0
4
80
0.85
112061171--112061241
32
2.2
32
83
11
85
19
0
4
76
0.96
112061247--112061282
18
2.0
18
94
0
63
13
2
44
38
1.59
112062233--112062290
21
2.8
21
82
12
66
62
0
8
29
1.25
112063018--112063087
3
23.3
3
88
5
97
61
4
1
32
1.24
112063185--112063254
3
22.7
3
72
5
50
67
4
5
22
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112063184--112063214
16
1.9
16
100
0
62
70
6
0
22
1.09
112063824--112063869
13
3.8
12
78
21
51
15
4
0
80
0.86
112065009--112065407
89
4.4
92
79
7
383
37
19
14
29
1.91
112064983--112065941
181
5.5
177
77
12
813
37
18
15
28
1.91
112064926--112065425
89
5.6
87
76
8
364
38
18
14
28
1.90
112065284--112065766
162
2.9
160
76
15
463
38
18
14
29
1.90
112065340--112065479
72
1.9
72
91
0
226
32
22
15
30
1.94
112065103--112065765
341
1.9
339
84
5
881
38
18
14
28
1.90
112065840--112065871
15
2.1
15
94
0
55
56
9
9
25
1.61
112065406--112065941
86
6.1
86
77
10
444
38
18
15
28
1.91
112078129--112078169
22
1.9
21
90
5
64
60
0
12
26
1.31
112078125--112078179
21
2.5
22
80
13
69
61
0
9
29
1.26
112080338--112080370
7
4.7
7
96
0
57
12
0
39
48
1.40
112080885--112080917
14
2.3
15
94
5
59
60
0
0
39
0.97
112080854--112080927
27
2.8
26
80
11
64
54
0
2
43
1.14
112084948--112084982
3
11.7
3
100
0
70
34
0
0
65
0.93
112086035--112086070
18
2.0
18
100
0
72
61
11
5
22
1.50
112086739--112086786
24
2.0
24
88
8
71
33
6
4
56
1.44
112086739--112086801
24
2.7
23
83
9
67
30
4
4
60
1.38
112087532--112087557
2
13.0
2
100
0
52
50
0
50
0
1.00
112088920--112089099
93
1.9
93
85
0
243
23
28
18
30
1.98
112091073--112091107
18
1.9
18
88
0
52
42
11
2
42
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112103205--112104453
640
2.0
640
87
3
1809
40
10
18
30
1.83
112104901--112105027
50
2.5
51
93
1
211
34
16
23
25
1.95
112105003--112105120
31
3.8
31
94
0
209
26
18
27
27
1.98
112105142--112105346
47
4.4
47
85
8
210
28
14
27
29
1.95
112105142--112105346
95
2.2
89
83
8
234
28
14
27
29
1.95
112105316--112105377
31
2.0
31
87
0
88
32
11
27
29
1.91
112108810--112108888
38
2.1
38
97
0
149
41
13
21
22
1.89
112126244--112126375
21
6.3
21
94
0
228
56
4
31
7
1.48
112130389--112130422
16
2.1
16
88
0
50
47
8
0
44
1.34
112132822--112132850
14
2.1
14
93
6
51
62
20
0
17
1.33
112134165--112134197
2
16.5
2
93
0
57
45
0
3
51
1.16
112139908--112139945
18
2.1
18
95
0
67
34
15
2
47
1.60
112140045--112140090
21
2.2
21
84
3
58
21
15
2
60
1.45
112140128--112140152
13
1.9
13
100
0
50
40
8
0
52
1.31
112140243--112140296
23
2.3
23
90
3
81
38
0
1
59
1.08
112141556--112141589
6
5.7
6
89
0
50
76
11
0
11
1.02
112142411--112142449
19
2.1
19
95
0
69
61
0
0
38
0.96
112143812--112143860
26
1.9
26
84
12
66
51
4
2
42
1.32
112147138--112147173
18
2.0
18
100
0
72
27
11
11
50
1.72
112149625--112149669
19
2.4
19
85
3
56
26
4
2
66
1.22
112149930--112149970
20
2.0
20
85
4
55
46
0
21
31
1.52
112154543--112154623
41
2.0
41
97
0
153
35
0
23
40
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112155322--112155401
38
2.1
38
83
0
97
20
20
27
32
1.97
112159139--112159177
17
2.3
17
95
0
69
53
2
2
41
1.28
112159138--112159178
13
3.2
13
86
10
57
56
2
2
39
1.26
112159186--112159279
32
2.9
31
76
13
93
56
6
3
34
1.41
112159204--112159306
22
4.7
22
74
16
72
59
5
1
33
1.32
112159253--112159331
25
3.5
22
73
15
63
56
7
3
31
1.45
112159448--112159483
3
12.0
3
100
0
72
66
0
0
33
0.92
112159808--112159842
11
3.2
11
95
0
61
54
5
0
40
1.24
112159808--112159850
9
4.4
10
83
13
54
51
6
0
41
1.29
112159909--112159981
21
3.2
23
76
9
69
49
2
12
35
1.55
112159933--112160032
23
4.4
23
75
18
79
56
4
4
36
1.37
112159988--112160073
38
2.2
38
85
10
111
59
3
1
36
1.22
112159986--112160105
13
10.0
12
71
15
88
58
3
0
37
1.21
112159998--112160103
24
4.2
24
79
10
97
58
3
0
36
1.23
112159998--112160109
11
10.1
11
68
19
54
58
4
0
36
1.25
112160140--112160164
12
2.1
12
100
0
50
56
8
0
36
1.29
112160239--112160281
14
3.2
13
80
9
50
67
0
6
25
1.15
112160372--112160412
6
6.7
6
86
5
55
75
2
2
19
1.03
112162226--112162639
86
4.8
86
87
3
602
35
18
16
28
1.93
112162380--112162412
14
2.4
14
94
0
57
51
9
21
18
1.73
112162226--112162639
171
2.4
171
95
0
747
35
18
16
28
1.93
112162631--112162698
33
2.1
33
100
0
136
44
8
8
38
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
112163540--112163656
44
2.7
44
88
4
157
14
23
17
45
1.85
112166463--112166743
18
15.2
18
70
12
149
37
16
11
34
1.84
112166463--112166743
36
7.6
36
70
12
183
37
16
11
34
1.84
112166540--112166737
54
3.7
53
75
11
197
38
16
10
34
1.83
112166546--112166743
72
2.8
70
83
6
238
38
15
11
34
1.83
112166911--112167105
45
4.3
45
94
0
309
40
20
20
18
1.92
112167514--112167570
5
11.2
5
88
3
78
36
24
0
38
1.56
112167696--112167758
25
2.4
26
79
10
67
31
9
1
57
1.40
112167928--112167988
21
2.9
21
79
13
63
47
18
0
34
1.49
112172986--112173259
46
6.0
46
88
3
374
22
23
14
39
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362