Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  315  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105261175--105261221
15
3.1
15
75
0
58
57
6
2
34
1.36
105293778--105293916
69
2.0
69
97
0
260
26
13
32
27
1.94
105307831--105307939
54
2.0
55
92
1
184
46
11
10
31
1.74
105312162--105312194
17
2.1
17
88
11
52
42
0
0
57
0.98
105312761--105312799
19
2.1
19
85
0
51
61
0
5
33
1.18
105313438--105313758
3
106.0
3
76
12
131
1
41
0
57
1.11
105313510--105313572
19
3.4
19
80
10
67
3
30
0
66
1.07
105313653--105313753
37
2.7
37
85
0
139
0
41
0
57
1.05
105316857--105316954
40
2.5
40
81
4
112
30
27
16
25
1.96
105317181--105317206
9
2.9
9
100
0
52
34
30
0
34
1.58
105317888--105317969
11
7.8
10
70
16
51
3
21
2
71
1.13
105322473--105322497
13
1.9
13
100
0
50
40
24
4
32
1.73
105336489--105336546
25
2.3
25
85
5
82
29
32
10
27
1.90
105345198--105345241
11
3.9
11
79
5
52
36
2
4
56
1.32
105346481--105346518
19
2.0
19
100
0
76
52
5
10
31
1.58
105346701--105346767
22
3.0
22
81
12
84
19
20
17
41
1.90
105358470--105358558
43
2.0
44
93
2
153
46
15
12
25
1.81
105359414--105359467
3
18.3
3
78
3
56
64
0
3
31
1.11
105359554--105359584
15
2.1
15
100
0
62
61
0
6
32
1.21
105359851--105359997
9
16.4
9
66
11
52
57
2
10
29
1.46
105359879--105360000
3
40.7
3
73
9
88
59
2
9
28
1.40
105359884--105359923
20
2.0
21
85
5
55
57
2
12
27
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105359937--105360014
12
5.9
13
79
16
72
61
1
6
30
1.29
105361100--105361168
33
2.1
33
88
0
102
15
17
50
15
1.78
105361897--105362394
43
11.5
44
72
11
359
21
21
21
35
1.96
105361940--105362183
87
2.8
87
88
2
339
20
22
21
36
1.96
105361854--105362528
130
5.2
130
76
8
471
21
21
22
35
1.96
105361849--105362307
217
2.1
217
94
0
801
20
22
21
35
1.96
105362602--105362729
64
2.0
64
92
0
211
38
14
17
30
1.89
105369152--105369181
15
2.0
15
93
0
51
63
0
6
30
1.20
105369268--105369298
15
2.1
15
100
0
62
61
0
6
32
1.21
105369811--105369918
26
4.2
26
92
0
180
31
7
25
36
1.83
105372678--105372796
3
39.7
3
72
9
82
59
2
9
28
1.41
105372683--105372722
20
2.0
21
85
5
55
57
2
12
27
1.48
105372736--105372810
12
5.9
13
77
11
59
61
1
6
30
1.30
105372737--105372803
24
2.8
24
86
8
68
59
1
7
31
1.34
105373899--105373967
33
2.1
33
91
0
111
14
17
52
15
1.75
105374619--105374644
13
2.0
13
100
0
52
15
30
7
46
1.74
105375134--105375177
13
3.4
13
84
12
63
47
9
9
34
1.67
105376184--105376222
19
2.1
19
95
0
69
43
15
2
38
1.60
105377567--105377703
37
3.7
37
76
8
118
38
15
13
32
1.86
105382246--105382325
40
2.0
40
100
0
160
37
20
2
40
1.66
105382343--105382380
19
2.0
19
89
0
58
34
18
7
39
1.80
105389820--105389922
42
2.5
42
90
0
152
33
12
25
29
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105391442--105391476
14
2.5
14
95
0
61
40
2
22
34
1.69
105392014--105392050
16
2.3
16
86
13
58
40
0
0
59
0.97
105392064--105392113
16
3.2
16
70
18
52
52
0
0
48
1.00
105394442--105394924
241
2.0
241
97
0
912
42
19
13
24
1.88
105398010--105398048
18
2.2
18
86
9
53
53
2
0
43
1.14
105398028--105398074
23
2.1
22
88
7
69
59
4
0
36
1.17
105400977--105401062
42
2.0
42
97
0
163
36
20
16
26
1.94
105405255--105405328
26
2.9
26
78
6
80
32
22
24
20
1.98
105407165--105407217
21
2.5
22
76
11
56
32
18
7
41
1.79
105409938--105410028
27
3.4
26
79
10
103
12
23
18
46
1.82
105410616--105410663
17
2.8
18
78
9
55
70
6
6
16
1.28
105411951--105412007
21
2.6
22
80
2
71
26
28
15
29
1.96
105414308--105414421
43
2.7
43
83
0
147
30
21
18
29
1.97
105414848--105414981
66
2.0
66
82
2
162
13
21
20
44
1.86
105419481--105419539
21
2.8
20
70
7
55
16
20
35
27
1.94
105419481--105419560
42
1.9
42
86
0
115
16
20
36
27
1.93
105419482--105419570
42
2.1
42
82
0
106
16
16
38
28
1.91
105424961--105425003
22
2.0
23
86
9
63
23
55
13
6
1.62
105426938--105427306
130
2.8
130
88
0
533
29
18
18
33
1.95
105426958--105427418
130
3.5
128
81
5
487
27
19
18
34
1.95
105438702--105438751
12
4.2
12
89
0
64
2
58
0
40
1.10
105438711--105438751
3
13.7
3
94
0
64
0
60
0
39
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105438702--105438756
15
3.7
15
87
0
83
1
54
0
43
1.10
105442291--105442357
18
3.4
18
67
25
55
52
13
8
25
1.69
105442284--105442387
41
2.5
42
93
3
174
55
10
7
25
1.60
105448197--105448299
43
2.3
43
79
15
129
53
2
7
35
1.45
105456251--105456324
26
2.9
26
82
11
75
59
1
4
35
1.25
105456428--105456545
61
1.9
61
92
0
200
43
16
20
20
1.88
105456864--105456957
37
2.5
37
96
0
170
25
21
26
26
1.99
105457143--105457213
16
4.4
17
75
13
69
32
4
23
39
1.74
105465888--105466129
49
4.9
50
85
2
326
25
19
26
28
1.98
105465891--105466129
101
2.4
98
86
2
325
25
19
26
29
1.98
105469350--105469390
14
2.8
15
85
7
66
43
0
0
56
0.99
105469508--105469572
32
2.0
32
82
5
78
44
13
7
33
1.73
105470040--105470098
21
2.8
22
80
7
61
22
0
8
69
1.15
105470069--105470118
26
2.0
24
88
7
73
30
0
6
64
1.18
105479685--105479714
15
2.0
15
93
0
51
50
0
10
40
1.36
105479681--105479743
27
2.3
26
78
10
72
39
0
9
50
1.35
105482328--105482707
189
2.0
189
100
0
760
30
17
24
27
1.97
105495108--105495222
60
1.9
60
92
0
194
17
26
19
36
1.94
105499917--105499970
20
2.8
19
75
10
56
75
9
1
12
1.11
105501410--105501438
14
2.1
14
100
0
58
51
6
6
34
1.55
105510224--105510678
44
10.1
44
76
9
339
34
17
19
29
1.95
105510224--105510697
132
3.5
131
76
9
378
33
17
18
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105514148--105514185
6
6.7
6
93
6
62
63
0
0
36
0.95
105517179--105517226
23
2.1
23
84
0
60
47
0
10
41
1.37
105517787--105517841
20
3.0
18
82
12
67
60
1
1
36
1.18
105517787--105517874
8
10.5
8
69
18
54
60
4
2
32
1.30
105524243--105524284
3
14.3
3
80
14
52
59
0
40
0
0.97
105525130--105525187
20
3.0
19
77
5
71
67
6
1
24
1.25
105524796--105526092
146
9.1
142
86
8
1683
59
7
5
26
1.47
105525306--105525340
13
2.7
13
86
0
52
77
2
0
20
0.90
105524781--105526092
285
4.6
285
84
9
1676
59
7
5
27
1.47
105532466--105532507
22
1.9
22
90
9
68
2
28
0
69
1.01
105536031--105536118
43
2.0
43
91
0
140
38
18
9
34
1.82
105536396--105536429
16
2.1
17
88
5
52
14
58
0
26
1.36
105540056--105540239
92
2.0
92
100
0
368
25
16
19
39
1.92
105540875--105540956
35
2.3
35
91
0
128
41
12
9
36
1.76
105542779--105542813
9
3.9
9
100
0
70
34
22
31
11
1.90
105553317--105553390
28
2.5
29
82
8
87
22
35
25
16
1.95
105553329--105553389
28
2.2
28
90
0
95
21
31
31
16
1.95
105560991--105561064
40
1.9
40
83
8
100
0
35
1
63
1.03
105568741--105568777
6
6.2
6
100
0
74
16
32
35
16
1.91
105574242--105574276
2
17.5
2
100
0
70
51
0
48
0
1.00
105575288--105575381
48
2.0
48
87
8
138
19
12
27
40
1.88
105577803--105577896
48
2.0
48
87
8
138
19
12
27
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105587887--105588050
64
2.6
65
96
2
298
39
4
8
46
1.56
105588334--105588424
33
2.7
34
81
3
96
20
13
45
20
1.85
105589228--105589262
14
2.5
14
85
0
52
42
5
20
31
1.75
105589889--105589938
17
2.8
17
87
6
64
48
0
2
50
1.12
105590056--105590089
12
2.8
12
83
16
52
41
0
5
52
1.25
105590158--105590198
18
2.2
19
91
4
66
63
0
34
2
1.08
105591275--105591327
6
8.8
6
85
0
61
18
20
15
45
1.85
105593709--105593945
119
2.0
119
90
3
379
56
6
4
32
1.44
105594864--105594888
5
5.0
5
100
0
50
20
0
0
80
0.72
105606536--105606818
18
15.3
18
71
11
160
36
15
12
35
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362