genome.fa.s8.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  125  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41319876--41320004	51	2.5	51	80	0	168	38	5	13	42	1.67
41325077--41325205	51	2.5	51	80	0	168	39	4	13	41	1.66
41326547--41326590	6	7.3	6	100	0	88	31	50	0	18	1.47
41334735--41334765	15	2.1	15	93	0	53	19	22	16	41	1.89
41340934--41341010	39	2.0	39	94	0	136	36	6	20	36	1.79
41347365--41347411	24	2.0	24	86	0	67	34	27	12	25	1.92
41347375--41347437	24	2.6	24	89	0	90	31	34	14	19	1.91
41360922--41361100	94	1.9	94	98	0	349	31	13	15	39	1.86
41369552--41369597	19	2.4	19	100	0	92	21	15	26	36	1.93
41371780--41371807	3	9.3	3	100	0	56	64	0	0	35	0.94
41373673--41373768	45	2.1	45	90	0	147	36	25	13	25	1.92
41374318--41374348	15	2.1	15	93	0	53	54	25	0	19	1.44
41383016--41383094	37	2.1	37	88	4	115	25	30	18	25	1.98
41383213--41383519	47	6.5	47	92	1	488	29	30	8	31	1.87
41383213--41383519	143	2.2	141	90	1	488	29	30	8	31	1.87
41383489--41383548	29	2.1	29	100	0	120	31	25	6	36	1.82
41383442--41383595	76	2.0	76	96	0	281	31	27	7	33	1.84
41383394--41383642	123	2.0	124	96	1	455	30	28	7	33	1.85
41383519--41383685	47	3.6	47	96	0	316	30	28	8	32	1.86
41383346--41383685	170	2.0	171	96	1	628	30	28	7	32	1.86
41386625--41386653	13	2.2	13	100	0	58	55	13	0	31	1.39
41397543--41399157	805	2.0	806	92	0	2723	25	17	31	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41402284--41402315	14	2.4	14	90	10	50	21	9	28	40	1.84
41402337--41402562	50	4.5	49	80	9	244	24	17	26	31	1.97
41402327--41402562	101	2.3	100	83	6	282	25	17	26	31	1.97
41402285--41402580	151	1.9	152	87	4	427	25	16	26	32	1.96
41402281--41402574	50	5.8	50	77	10	237	25	16	25	31	1.96
41406025--41406060	15	2.4	15	95	0	63	13	16	11	58	1.63
41409007--41409344	50	6.7	50	82	3	347	24	16	25	33	1.96
41409055--41409352	101	3.0	101	81	3	368	24	18	25	31	1.97
41409007--41409334	151	2.2	151	82	2	381	23	16	25	33	1.96
41412797--41412834	20	1.9	20	94	0	67	21	5	2	71	1.19
41425069--41425128	4	14.8	4	75	19	54	23	1	0	75	0.90
41425062--41425130	29	2.3	31	85	14	101	21	1	0	76	0.86
41425077--41425128	15	3.5	15	77	17	63	23	1	0	75	0.91
41428515--41428552	20	1.9	20	94	0	67	21	5	2	71	1.19
41431607--41431650	18	2.4	19	85	11	56	36	2	0	61	1.09
41434406--41434465	25	2.3	26	81	16	70	35	3	13	48	1.59
41434406--41434470	27	2.4	28	74	23	68	35	3	13	47	1.59
41436075--41436123	19	2.6	18	83	9	53	30	16	2	51	1.56
41446801--41446895	37	2.6	36	83	9	106	18	10	25	45	1.82
41448328--41448482	42	3.7	41	80	5	168	32	24	12	29	1.93
41457565--41457627	29	2.3	28	89	8	94	41	1	9	47	1.45
41458792--41458837	23	2.0	23	95	4	85	54	8	0	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41458859--41458896	18	2.1	18	90	9	60	34	5	0	60	1.19
41459425--41459469	2	22.5	2	90	0	72	46	2	2	48	1.26
41460307--41460383	22	3.4	22	69	13	75	54	14	0	31	1.40
41460307--41460394	46	1.9	46	97	0	167	51	14	0	34	1.43
41463719--41463783	17	3.9	16	73	15	51	35	1	3	60	1.22
41464562--41464661	50	2.0	50	98	0	191	17	6	11	66	1.42
41465175--41465274	36	2.8	36	93	0	164	49	20	5	26	1.69
41465736--41465785	24	2.1	24	85	7	66	24	18	42	16	1.89
41468810--41468858	20	2.7	18	75	12	55	48	6	2	42	1.39
41480054--41480276	40	5.6	40	93	0	374	22	28	21	27	1.99
41481402--41481426	11	2.3	11	100	0	50	48	20	0	32	1.50
41490140--41490362	40	5.6	40	92	0	365	22	28	21	27	1.99
41491478--41491520	21	2.0	21	100	0	86	41	16	0	41	1.48
41495850--41495920	33	2.2	33	94	0	124	29	25	8	36	1.85
41496593--41496700	42	2.5	42	79	7	112	26	25	21	25	1.99
41503361--41503538	27	6.6	27	85	3	205	29	29	14	26	1.95
41503361--41503538	54	3.3	54	85	3	232	29	29	14	26	1.95
41503382--41503537	81	1.9	82	88	3	235	29	29	14	26	1.95
41511473--41511649	27	6.6	27	85	5	205	29	28	14	26	1.95
41511494--41511648	81	1.9	81	89	2	240	29	29	14	26	1.95
41513471--41513911	27	16.3	27	75	6	155	38	20	7	33	1.82
41513508--41513656	81	1.8	81	80	0	181	34	17	6	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41513609--41513938	54	6.1	53	72	12	197	40	20	8	30	1.83
41513623--41513854	27	8.7	27	78	6	197	41	20	9	28	1.83
41513623--41513829	80	2.6	81	82	6	224	40	20	9	29	1.83
41513623--41513855	80	2.9	79	79	10	215	41	20	9	29	1.83
41513555--41513940	27	14.3	27	76	6	174	38	19	8	33	1.83
41513979--41514062	27	3.1	27	91	3	125	30	21	26	21	1.98
41514871--41514960	25	3.6	25	95	1	155	25	27	23	23	2.00
41515182--41515352	31	5.5	31	88	0	243	28	16	25	30	1.97
41519066--41519181	42	2.7	42	81	6	128	25	27	22	24	2.00
41524360--41524399	20	2.0	20	90	0	62	50	15	10	25	1.74
41524383--41524422	14	2.9	14	84	0	53	42	17	7	32	1.77
41524348--41524414	34	1.9	35	87	3	100	46	14	8	29	1.76
41524623--41524652	15	2.0	15	93	0	51	73	10	6	10	1.25
41525028--41525228	9	22.7	9	65	22	63	55	17	2	23	1.56
41525059--41525229	21	7.8	22	74	15	83	56	16	2	23	1.52
41525154--41525231	13	6.0	13	71	21	65	57	20	1	20	1.48
41525061--41525199	71	1.9	71	81	5	163	56	16	2	24	1.54
41528576--41528619	22	1.9	24	86	9	65	43	2	13	40	1.57
41528814--41528855	21	2.0	21	85	0	57	40	14	7	38	1.73
41530248--41530291	21	2.1	21	83	4	54	31	40	22	4	1.74
41531319--41531361	22	2.0	20	82	8	50	32	6	0	60	1.23
41541133--41541304	93	1.8	93	86	0	245	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41541125--41541300	46	3.8	45	72	10	149	28	27	19	23	1.98
41544313--41544497	79	2.3	81	82	7	218	24	23	27	24	2.00
41544314--41544497	40	4.6	39	80	9	194	25	23	27	23	2.00
41544366--41544530	79	2.1	79	83	6	201	26	21	27	24	1.99
41552239--41552418	40	4.6	38	80	10	177	25	22	27	24	2.00
41557083--41557321	88	2.7	87	83	3	293	35	23	21	19	1.95
41557083--41557324	44	5.5	44	71	9	154	36	23	21	19	1.95
41559624--41559666	22	2.0	20	82	8	50	32	6	0	60	1.23
41561915--41561946	16	2.0	16	93	0	55	34	18	0	46	1.49
41562143--41562315	50	3.4	50	78	7	206	30	25	17	26	1.98
41562664--41562710	19	2.3	20	82	10	60	48	14	0	36	1.44
41573935--41574138	40	5.1	40	87	2	268	25	28	23	23	1.99
41575369--41575409	10	4.1	10	84	9	57	0	19	0	80	0.71
41604159--41604186	8	3.5	8	100	0	56	85	0	0	14	0.59
41605320--41605365	23	2.0	22	83	4	56	52	4	13	30	1.59
41616026--41616071	20	2.3	20	81	3	58	23	17	30	28	1.97
41618555--41618587	2	16.5	2	100	0	66	51	0	48	0	1.00
41618694--41618761	34	2.0	34	100	0	136	41	23	14	20	1.89
41625046--41625157	26	4.3	26	85	6	140	20	12	28	38	1.89
41625099--41625408	154	2.0	154	100	0	620	20	14	26	38	1.91
41630803--41631139	48	7.0	48	85	1	442	27	15	29	27	1.96
41630814--41631176	48	7.6	48	81	7	248	27	15	28	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41638596--41638930	48	7.0	48	89	1	467	25	17	30	26	1.97
41638600--41638968	48	7.7	48	88	2	287	24	16	31	27	1.97
41641130--41641190	20	3.0	20	69	9	61	22	32	18	26	1.97
41641112--41641312	40	5.0	40	81	4	226	20	27	17	33	1.95
41641113--41641312	80	2.5	81	83	1	251	20	27	18	34	1.96
41653870--41653932	33	1.9	32	87	3	90	65	3	6	25	1.32
41665405--41665468	26	2.4	26	84	5	74	35	23	10	29	1.89
41665574--41665678	27	3.9	26	82	14	115	17	23	22	36	1.95
41665573--41665684	54	2.1	54	86	6	156	16	24	23	36	1.94
41669533--41669565	16	2.0	17	94	5	59	0	15	0	84	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362