genome.fa.s8.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  162  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53385205--53385273	25	2.7	25	80	10	77	15	8	8	66	1.43
53388971--53389049	37	2.1	37	88	0	113	24	31	18	25	1.98
53389168--53389639	47	10.2	47	89	5	667	29	29	8	32	1.88
53389337--53389465	38	3.2	38	85	9	150	31	27	8	33	1.87
53389337--53389607	85	3.1	85	84	9	380	29	29	8	32	1.87
53389290--53389717	132	3.0	132	82	11	532	29	28	8	32	1.87
53389422--53389643	95	2.3	94	93	3	381	29	30	9	31	1.88
53389219--53389633	227	1.8	225	94	1	740	30	29	8	32	1.86
53389534--53389742	110	1.9	110	95	0	382	29	30	8	32	1.86
53389644--53389742	47	2.1	47	98	0	189	29	29	8	33	1.86
53389581--53389701	63	1.9	63	96	1	226	29	29	7	33	1.85
53393160--53393299	40	3.5	38	75	9	118	24	27	22	25	2.00
53393606--53393684	29	2.7	29	86	5	106	27	32	15	24	1.95
53393666--53393768	43	2.4	43	100	0	206	26	35	15	22	1.94
53395619--53395697	37	2.1	37	90	0	122	25	31	18	24	1.98
53395816--53396344	48	11.1	47	91	4	783	28	30	8	32	1.88
53396202--53396280	25	3.2	25	63	20	67	34	31	5	29	1.79
53404311--53404383	20	3.5	20	70	7	65	28	9	27	34	1.88
53408686--53408773	40	2.2	40	100	0	176	20	26	39	13	1.90
53415447--53415513	27	2.4	27	73	24	68	37	0	2	59	1.13
53415463--53415518	24	2.3	24	84	3	67	35	0	1	62	1.06
53417590--53417816	46	4.9	46	89	1	312	40	13	23	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53427040--53427174	44	3.2	43	82	6	150	32	27	16	23	1.96
53433102--53433271	43	4.0	43	76	6	166	27	14	25	32	1.95
53439605--53439715	27	4.2	26	85	5	141	36	22	25	16	1.94
53441127--53441176	24	2.1	24	96	0	91	22	42	4	32	1.72
53447406--53447517	27	4.2	26	84	5	134	36	22	23	17	1.95
53448930--53448981	24	2.2	24	96	0	95	19	42	3	34	1.69
53454399--53454635	48	4.9	47	85	3	287	25	29	18	26	1.98
53454399--53454632	96	2.4	97	88	3	330	25	29	18	26	1.98
53469389--53469431	2	21.5	2	100	0	86	51	0	0	48	1.00
53469720--53469761	20	2.1	20	86	0	57	33	4	26	35	1.77
53484691--53484768	23	3.3	23	70	12	61	30	19	23	26	1.98
53484689--53484779	45	2.0	45	81	14	105	30	20	23	25	1.98
53485657--53485706	19	2.5	20	74	6	57	40	10	4	46	1.56
53497368--53497592	48	4.6	49	75	18	161	23	28	19	28	1.98
53497414--53497593	100	1.8	100	86	7	267	22	28	20	28	1.98
53497936--53498019	30	2.8	30	96	0	150	33	27	10	28	1.90
53498903--53498963	22	2.7	22	76	11	70	6	6	27	59	1.48
53498931--53498971	21	1.9	22	85	5	57	7	4	26	60	1.43
53498980--53499004	11	2.3	11	100	0	50	0	0	32	68	0.90
53499265--53499295	15	2.1	15	93	0	53	35	12	16	35	1.87
53503800--53503830	16	1.9	16	93	0	53	83	0	16	0	0.64
53505354--53505391	20	1.9	20	84	10	51	50	2	2	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53513096--53513125	12	2.5	12	94	0	51	6	30	40	23	1.80
53516803--53517184	61	6.3	61	83	2	426	26	24	15	33	1.95
53516803--53517184	122	3.1	122	85	0	503	26	24	15	33	1.95
53516803--53517184	183	2.1	183	86	1	514	26	24	15	33	1.95
53517078--53517180	29	3.4	29	73	12	100	26	23	16	33	1.95
53517294--53517428	53	2.6	53	80	8	134	28	21	10	40	1.86
53525470--53525514	20	2.2	20	84	4	54	46	8	2	42	1.47
53525716--53525751	19	1.9	18	88	5	54	80	0	13	5	0.88
53526363--53526834	42	11.3	42	86	1	615	37	23	18	21	1.94
53528756--53528947	40	4.8	40	92	1	305	23	23	28	23	1.99
53535349--53535382	14	2.3	15	85	5	52	73	2	20	2	1.09
53535730--53535861	47	2.8	48	89	1	203	34	28	15	21	1.94
53540466--53540511	7	6.6	7	84	0	56	34	0	45	19	1.51
53544681--53544885	27	7.6	27	85	4	252	26	15	28	29	1.96
53555466--53555543	27	2.9	28	90	5	124	33	14	23	29	1.93
53555531--53555615	27	3.2	27	85	6	111	40	16	11	31	1.85
53555582--53555881	27	11.0	26	77	8	174	42	17	9	31	1.80
53555582--53555733	81	1.9	81	83	5	200	42	17	7	31	1.78
53555566--53555901	27	12.4	27	76	8	119	41	17	9	31	1.82
53556139--53556220	41	2.0	41	95	0	146	23	24	26	25	2.00
53556366--53556426	22	2.8	22	87	5	70	21	27	21	29	1.98
53557942--53558123	69	2.6	69	90	3	269	23	21	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53557941--53558136	23	8.5	23	82	5	227	23	21	24	30	1.99
53560977--53561011	8	4.4	8	96	0	61	34	2	25	37	1.71
53560970--53561011	16	2.6	17	88	7	54	35	2	28	33	1.70
53565598--53565668	33	2.1	34	82	7	83	28	25	19	26	1.99
53566032--53566165	27	5.0	27	78	10	82	24	21	20	32	1.98
53566047--53566219	27	6.4	27	86	0	229	23	20	20	34	1.96
53570004--53570039	10	3.5	10	85	7	54	75	0	5	19	1.00
53570191--53570238	24	2.0	24	87	0	69	37	4	10	47	1.57
53572733--53572956	79	2.8	79	85	6	292	25	28	22	24	2.00
53572733--53572956	40	5.7	40	86	6	280	25	28	22	24	2.00
53580706--53580927	39	5.7	40	86	7	278	24	27	22	24	2.00
53580706--53580927	77	2.8	78	85	8	281	24	27	22	24	2.00
53589149--53589190	22	1.9	22	85	0	57	30	0	26	42	1.55
53595883--53595932	26	2.0	25	84	11	66	60	6	14	20	1.55
53606179--53606229	24	2.2	24	83	13	63	23	31	17	27	1.97
53606365--53606434	24	2.9	25	72	8	72	20	22	20	37	1.95
53607785--53607870	34	2.5	34	86	3	120	22	29	25	23	1.99
53607785--53607888	34	3.1	32	80	12	111	25	26	24	24	2.00
53633411--53633458	26	1.9	25	87	8	71	31	33	22	12	1.91
53633275--53633537	101	2.6	102	87	6	379	30	29	20	20	1.97
53633864--53633928	30	2.2	29	81	8	76	30	27	6	35	1.81
53633871--53633928	30	1.9	30	85	0	80	31	24	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53640760--53641022	102	2.6	103	88	5	388	30	29	20	19	1.97
53641350--53641414	30	2.2	29	81	8	76	30	27	6	35	1.81
53641357--53641414	30	1.9	30	85	0	80	31	24	6	37	1.82
53647071--53647197	46	2.8	45	83	9	150	19	21	31	27	1.97
53652213--53652381	41	4.1	41	76	8	157	27	28	20	23	1.99
53652237--53652382	41	3.6	41	80	3	170	28	28	21	21	1.99
53659345--53659512	40	4.1	41	76	10	148	26	29	20	23	1.99
53659367--53659513	40	3.7	40	78	9	165	27	28	20	23	1.99
53661411--53661968	275	2.0	275	99	0	1107	29	24	14	30	1.95
53666752--53666919	40	4.1	41	76	10	157	26	29	19	24	1.99
53670510--53670615	53	2.0	53	94	0	185	29	20	21	28	1.98
53678647--53679098	47	9.6	47	93	0	679	32	8	29	28	1.87
53680514--53680825	40	7.8	40	92	0	489	24	21	28	25	1.99
53680853--53680893	21	1.9	22	95	5	75	9	29	31	29	1.89
53684879--53685331	47	9.6	47	93	2	737	32	8	29	29	1.86
53689805--53689927	27	4.6	27	77	5	124	40	20	15	23	1.90
53689805--53689927	54	2.3	55	83	5	153	40	20	15	23	1.90
53690871--53691006	26	5.3	26	86	3	181	26	22	22	29	1.99
53690871--53691006	52	2.7	51	90	5	215	26	22	22	29	1.99
53691056--53691140	40	2.1	40	91	4	136	32	17	9	40	1.82
53691056--53691132	20	3.8	20	89	0	118	32	16	10	40	1.83
53691169--53691216	25	1.9	25	86	0	69	27	14	22	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53692905--53692999	27	3.5	26	80	7	109	37	17	15	28	1.91
53692991--53693052	27	2.3	27	88	5	90	22	16	16	45	1.85
53693437--53693482	24	1.9	24	95	0	83	10	26	13	50	1.74
53708883--53708907	8	3.1	8	100	0	50	12	0	12	76	1.04
53710180--53710218	20	1.9	21	84	5	53	25	17	25	30	1.97
53715045--53715160	40	2.9	40	85	5	162	23	29	21	25	1.99
53719990--53720365	48	7.8	48	87	3	535	27	18	29	25	1.98
53719990--53720360	191	1.9	192	89	4	579	26	18	29	24	1.98
53719993--53720401	191	2.1	191	86	7	562	27	18	29	24	1.98
53750802--53750841	20	2.1	20	86	9	57	17	50	20	12	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362