genome.fa.s8.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  141  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46983951--46984012	22	2.9	22	90	2	99	11	41	27	19	1.85
46985526--46985604	39	2.0	39	97	0	149	32	17	3	45	1.67
46987284--46987530	55	4.6	54	80	8	260	21	25	17	36	1.95
46987323--46987520	108	1.8	110	90	4	321	22	25	17	34	1.96
46992676--46992733	27	2.3	26	91	8	93	34	15	12	37	1.85
46994668--46994698	16	1.9	16	93	0	53	35	22	0	41	1.54
46994665--46994704	20	2.0	20	85	0	53	37	22	0	40	1.54
46998183--46998246	20	3.2	20	90	0	110	17	39	32	10	1.84
47001862--47002089	40	5.7	40	90	3	361	25	26	21	25	2.00
47009163--47009227	34	1.9	34	93	0	112	30	24	23	21	1.99
47014835--47014972	22	6.1	22	70	17	95	36	18	21	23	1.94
47018100--47018154	24	2.3	24	87	0	83	50	21	1	25	1.58
47027470--47027498	11	2.6	11	100	0	58	44	0	0	55	0.99
47036196--47036266	28	2.4	29	74	4	72	43	9	4	42	1.57
47036862--47036903	20	2.1	20	86	0	57	57	7	4	30	1.47
47043146--47043193	21	2.3	21	92	0	78	25	27	31	16	1.97
47046588--47046646	21	2.8	21	92	0	100	23	27	32	16	1.96
47046925--47046952	8	3.5	8	100	0	56	42	42	0	14	1.45
47047366--47047400	7	4.9	7	89	3	52	82	0	17	0	0.66
47051294--47051398	23	4.6	23	87	3	158	35	18	21	24	1.96
47051292--47051398	45	2.3	45	90	6	162	34	17	22	25	1.96
47051565--47051621	23	2.5	24	83	10	68	47	14	0	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47059997--47060094	28	3.5	28	87	2	126	31	27	13	27	1.94
47068866--47069118	68	3.9	64	76	10	165	24	29	16	29	1.97
47069583--47069642	29	2.0	30	87	3	86	30	25	3	41	1.71
47076040--47076485	42	10.6	42	90	2	646	30	25	20	23	1.98
47089014--47089502	48	10.1	48	93	1	791	36	6	25	31	1.82
47089021--47089499	244	2.0	242	94	1	834	36	6	26	31	1.82
47089649--47089756	36	3.0	36	94	2	189	22	19	31	26	1.98
47089649--47089756	37	2.9	37	95	1	191	22	19	31	26	1.98
47100269--47100321	27	2.0	27	92	0	88	35	18	11	33	1.87
47100742--47100806	28	2.4	27	80	10	78	23	24	20	32	1.98
47103186--47103293	44	2.4	44	87	3	144	29	23	13	33	1.93
47110552--47110659	44	2.4	44	84	3	135	29	23	12	34	1.92
47113469--47113695	27	8.4	27	87	0	274	37	18	19	24	1.94
47114346--47114397	27	2.0	26	84	3	68	17	26	21	34	1.95
47114436--47114494	27	2.2	27	85	8	77	22	18	20	38	1.93
47119324--47119499	68	2.6	68	77	13	150	20	27	17	34	1.95
47130355--47130554	27	7.4	27	84	0	256	35	18	20	26	1.95
47134509--47134533	13	1.9	13	100	0	50	32	16	16	36	1.90
47136384--47136490	47	2.3	47	96	0	196	32	7	28	30	1.85
47137747--47137813	33	2.0	33	97	0	125	26	14	23	34	1.94
47138323--47138639	40	7.9	40	80	4	363	22	22	28	26	1.99
47138365--47138642	80	3.5	80	96	1	504	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47138630--47138713	43	2.0	43	90	0	132	15	22	29	32	1.95
47138635--47138730	43	2.2	43	83	0	111	16	20	30	32	1.95
47138862--47138979	56	2.1	55	84	9	152	24	14	27	33	1.94
47138882--47139015	56	2.3	56	82	6	144	26	14	28	30	1.95
47141135--47141159	13	1.9	13	100	0	50	32	16	16	36	1.90
47143011--47143117	47	2.3	47	96	0	196	33	7	28	29	1.85
47163687--47164141	27	16.8	27	76	5	218	37	20	9	32	1.85
47163782--47164054	81	3.4	81	81	5	295	39	20	9	30	1.84
47164172--47164241	27	2.6	27	93	0	95	34	18	28	18	1.95
47164184--47164241	27	2.1	27	100	0	116	31	20	29	18	1.97
47164184--47164263	27	3.0	27	88	3	99	32	20	25	22	1.98
47165029--47165177	26	5.8	26	84	2	194	28	22	20	28	1.99
47165029--47165177	52	2.9	52	88	2	230	28	22	20	28	1.99
47165322--47165413	42	2.2	42	86	3	123	30	15	20	33	1.93
47166259--47166330	34	2.1	35	82	7	85	22	23	12	41	1.88
47167753--47167832	26	3.0	26	69	7	61	30	15	15	40	1.87
47168363--47168662	40	7.4	40	90	1	431	35	24	22	18	1.96
47168363--47168662	162	1.9	162	91	1	494	35	24	22	18	1.96
47169691--47169722	15	2.1	15	94	0	55	59	0	9	31	1.29
47169694--47169761	24	2.8	24	76	10	75	57	0	4	38	1.19
47171280--47171322	18	2.4	18	84	7	61	23	6	27	41	1.80
47173111--47173362	133	1.9	133	99	0	495	19	10	18	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47175888--47175927	21	1.9	21	94	0	71	30	10	12	47	1.74
47175047--47176286	462	2.7	461	96	0	2304	35	11	10	42	1.76
47183307--47183490	40	4.6	40	91	2	228	25	21	27	26	2.00
47183310--47183512	80	2.5	80	80	1	228	23	21	27	27	1.99
47185403--47185443	21	2.0	21	100	0	82	26	19	53	0	1.45
47185745--47186070	43	7.5	43	82	6	370	29	18	22	29	1.97
47185745--47186070	87	3.7	85	79	7	341	29	18	22	29	1.97
47185745--47186056	130	2.4	132	86	4	445	28	19	23	28	1.98
47198251--47198434	40	4.6	40	79	6	178	23	20	27	28	1.99
47198331--47198481	40	3.8	39	80	6	117	24	22	28	24	1.99
47201364--47201898	48	11.1	48	96	2	948	36	5	27	30	1.81
47201364--47201898	95	5.6	96	96	1	948	36	5	27	30	1.81
47201364--47201898	143	3.7	144	95	2	948	36	5	27	30	1.81
47201364--47201926	191	2.9	191	92	2	871	35	6	27	30	1.82
47202045--47202189	37	3.9	37	91	1	220	24	17	30	26	1.98
47203447--47203874	40	10.8	40	90	0	653	21	21	28	27	1.99
47203449--47203873	120	3.6	120	96	0	764	21	21	29	27	1.99
47204110--47204160	25	2.0	25	81	7	59	33	13	33	19	1.91
47204157--47204244	28	3.1	28	77	9	97	20	15	30	32	1.94
47207588--47208154	95	6.0	94	94	4	950	35	5	27	31	1.80
47207588--47208154	48	12.0	48	94	4	994	35	5	27	31	1.80
47207588--47208154	235	2.4	235	94	4	984	35	5	27	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47220231--47220294	27	2.4	27	83	0	74	37	23	10	28	1.89
47224905--47224967	27	2.3	27	88	0	99	42	28	4	23	1.74
47227708--47227762	27	2.1	26	86	3	74	34	25	21	18	1.96
47227742--47227822	28	2.9	29	83	5	98	30	19	24	24	1.98
47227925--47227988	26	2.4	26	86	2	74	28	10	23	37	1.89
47229979--47230130	25	6.0	25	72	14	116	31	19	22	26	1.97
47230006--47230130	50	2.5	50	77	5	137	32	19	22	26	1.97
47239366--47239391	12	2.2	12	100	0	52	53	0	15	30	1.42
47243758--47243975	40	5.5	39	86	5	235	26	20	27	25	1.99
47243711--47243973	120	2.2	120	82	4	318	26	20	27	25	1.99
47251355--47251617	120	2.2	120	81	6	293	26	21	26	25	1.99
47251355--47251617	40	6.6	40	82	4	246	26	21	26	25	1.99
47263074--47263331	40	6.5	40	90	3	371	22	22	28	26	1.99
47270562--47270702	40	3.5	40	85	6	160	29	26	19	24	1.98
47270552--47270718	40	4.2	40	86	1	158	29	25	19	25	1.99
47272448--47272539	27	3.4	27	87	0	130	28	20	9	41	1.84
47272571--47272693	27	4.6	27	77	8	126	43	21	6	28	1.78
47272541--47272692	80	1.9	80	82	5	191	42	19	9	28	1.82
47272571--47272738	53	3.1	55	79	5	155	42	19	7	30	1.78
47272596--47272721	27	4.7	25	75	14	65	44	19	6	29	1.75
47272649--47272756	27	3.9	27	77	11	103	42	16	7	33	1.76
47273684--47273753	25	2.8	25	93	4	115	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47273973--47274053	30	2.7	31	92	5	132	29	17	24	28	1.97
47279256--47279291	13	2.8	13	95	0	63	19	36	25	19	1.95
47281090--47281158	34	2.0	34	97	0	129	24	21	14	39	1.91
47290653--47290853	27	7.6	27	86	4	248	27	14	27	29	1.96
47290654--47290800	78	1.9	79	91	2	242	27	15	27	28	1.96
47298718--47298920	27	7.6	27	85	5	241	27	14	28	30	1.95
47298718--47298920	53	3.8	53	83	7	239	27	14	28	30	1.95
47312100--47312153	18	2.9	18	75	5	54	61	3	3	31	1.31
47312058--47313655	810	2.0	808	93	1	2734	35	23	14	25	1.94
47314267--47314330	31	2.1	31	90	0	101	25	23	14	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362