genome.fa.s8.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  160  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52639580--52639687	26	4.2	26	97	0	207	30	6	26	36	1.82
52641279--52641423	54	2.7	54	92	3	229	17	24	23	34	1.96
52641282--52641423	27	5.2	27	81	12	166	17	24	23	34	1.96
52650052--52650130	39	2.0	39	97	0	149	46	26	0	26	1.53
52650713--52650794	41	2.0	41	100	0	164	31	34	19	14	1.92
52653074--52653297	40	5.6	39	78	6	200	25	23	22	28	2.00
52653115--52653299	79	2.3	78	82	5	203	24	22	23	28	1.99
52656724--52656845	47	2.6	47	94	0	217	36	13	23	26	1.91
52656827--52657128	55	5.6	53	80	6	320	34	17	24	23	1.96
52656832--52657128	108	2.7	107	89	2	425	34	17	24	22	1.96
52656824--52657140	53	5.9	53	78	9	300	35	17	24	23	1.95
52660783--52660817	11	3.4	11	84	15	56	20	0	0	80	0.72
52660784--52660831	20	2.4	20	89	0	69	22	2	0	75	0.91
52661359--52661430	36	2.0	36	100	0	144	36	11	16	36	1.84
52665006--52665094	44	2.0	44	97	0	169	32	16	17	32	1.93
52669377--52669462	31	2.8	31	89	1	138	24	26	17	31	1.97
52669688--52669774	25	3.5	25	95	0	147	25	24	22	27	2.00
52676867--52676941	31	2.4	31	88	0	123	22	26	17	33	1.96
52677159--52677253	25	3.8	25	92	0	145	26	23	24	26	2.00
52694980--52695203	40	5.7	40	88	3	285	23	22	27	27	1.99
52694980--52695228	40	6.3	40	87	2	276	23	22	26	26	2.00
52715725--52715758	15	2.3	15	94	0	59	67	0	5	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52716028--52716095	33	2.1	33	100	0	136	30	5	20	42	1.76
52718570--52718628	30	2.0	30	83	6	75	30	25	5	38	1.77
52721998--52722041	18	2.6	16	82	7	52	11	13	4	70	1.31
52722102--52722165	21	3.0	21	77	4	67	23	9	3	64	1.38
52722664--52722712	11	4.3	11	82	10	62	34	0	6	59	1.22
52724854--52725018	46	3.9	38	86	9	132	35	15	23	25	1.94
52724892--52725108	46	4.7	46	90	1	301	39	15	23	21	1.91
52725791--52725918	3	43.7	3	71	18	74	28	6	2	63	1.31
52725997--52726043	3	15.7	3	82	8	60	29	4	2	63	1.25
52729654--52729691	20	1.9	19	89	5	58	76	0	0	23	0.79
52730047--52730126	41	2.0	38	88	7	115	50	11	8	30	1.68
52730190--52730225	18	2.0	18	88	0	54	72	0	5	22	1.05
52734454--52734500	23	2.0	23	95	0	85	36	8	6	48	1.59
52737991--52738018	3	9.3	3	100	0	56	32	32	0	35	1.58
52738769--52738801	15	2.1	16	94	5	59	6	9	6	78	1.08
52739144--52739216	37	2.0	36	81	7	85	72	6	4	16	1.22
52739581--52739611	15	2.1	15	100	0	62	51	12	0	35	1.40
52746382--52746654	141	2.0	135	91	4	438	26	6	22	44	1.78
52764120--52764226	53	2.0	53	85	0	142	28	8	9	54	1.61
52764872--52764912	18	2.3	18	83	8	57	21	0	4	73	1.02
52768761--52768877	5	22.8	5	69	22	50	20	3	4	71	1.17
52768753--52768879	8	15.2	8	70	21	59	20	3	4	71	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52768740--52768879	13	11.1	12	66	19	56	20	2	5	72	1.17
52768822--52768877	18	3.1	18	71	19	53	19	0	7	73	1.06
52768787--52768877	21	4.3	21	67	18	55	20	3	4	71	1.18
52784834--52784926	38	2.4	38	87	0	123	24	22	24	27	2.00
52784930--52785126	43	4.6	43	94	0	342	11	24	32	30	1.91
52790202--52790297	38	2.5	38	86	0	120	21	18	30	29	1.97
52796379--52796422	23	1.9	23	86	9	63	65	4	9	20	1.38
52798053--52798085	17	1.9	17	93	0	57	18	3	3	75	1.06
52798047--52798090	23	1.9	23	90	0	70	15	2	4	77	1.04
52798045--52798090	6	7.8	6	80	4	58	15	2	4	78	1.01
52801749--52801804	25	2.2	25	96	0	103	33	7	25	33	1.83
52804624--52804718	40	2.4	40	96	0	172	28	27	15	28	1.96
52804625--52804767	40	3.6	40	84	3	137	31	25	16	26	1.96
52810044--52810068	6	4.2	6	100	0	50	20	0	0	80	0.72
52833170--52833229	28	2.1	30	84	6	79	43	3	25	28	1.70
52833720--52833866	43	3.4	43	77	5	145	29	15	23	31	1.95
52839521--52839680	44	3.5	44	70	17	128	31	16	19	31	1.94
52839521--52839739	94	2.3	94	77	4	219	35	17	18	28	1.94
52842453--52842672	110	2.0	110	97	0	413	45	8	21	23	1.79
52844618--52844802	40	4.6	40	94	1	309	23	22	27	26	2.00
52844614--52844834	80	2.8	79	86	4	284	26	22	25	26	2.00
52845061--52845104	22	2.0	21	83	16	54	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52846317--52846641	39	8.3	39	94	0	465	17	22	30	29	1.97
52848958--52849099	39	3.6	39	86	1	178	23	21	28	26	1.99
52848963--52849115	78	2.0	78	81	5	184	23	20	29	26	1.99
52851319--52851433	45	2.6	45	94	0	203	16	11	29	42	1.83
52851712--52851742	10	3.1	10	95	0	53	38	0	3	58	1.15
52861281--52861353	27	2.7	27	82	0	83	31	16	21	30	1.95
52861351--52861678	27	12.1	27	77	5	126	39	19	10	30	1.84
52861389--52861597	54	3.9	54	78	5	208	42	19	8	29	1.81
52861377--52861597	81	2.7	80	76	7	214	42	19	9	28	1.82
52861448--52861659	54	3.9	55	78	8	182	41	16	10	31	1.82
52861703--52861780	27	2.9	27	80	3	86	37	20	19	23	1.95
52862151--52862233	33	2.8	28	78	18	96	26	25	22	25	2.00
52862169--52862273	33	3.2	33	91	0	174	26	20	23	28	1.99
52870409--52870797	48	8.1	48	97	0	733	36	6	27	30	1.81
52870944--52871015	37	1.9	37	94	0	126	22	19	30	27	1.98
52872270--52872588	40	8.0	40	87	0	431	22	21	28	27	1.99
52872752--52872802	25	2.0	25	81	7	59	33	13	31	21	1.92
52872799--52872889	28	3.2	28	78	9	103	20	16	30	31	1.95
52876109--52876593	48	10.1	48	95	0	835	36	5	27	29	1.81
52876740--52876848	37	2.9	37	94	0	182	23	19	30	26	1.98
52877742--52877773	15	2.0	17	88	11	50	12	0	37	50	1.41
52881669--52881783	27	4.3	27	83	4	142	36	20	19	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52882522--52882581	27	2.3	27	85	2	77	21	23	20	35	1.96
52888275--52888429	27	5.7	27	78	7	163	39	19	18	22	1.93
52888275--52888447	54	3.2	54	84	6	201	38	18	19	23	1.93
52888276--52888447	81	2.1	81	84	2	220	38	18	18	23	1.93
52889098--52889148	27	1.9	26	84	4	66	19	27	17	35	1.94
52890836--52890933	41	2.3	44	81	13	123	24	17	26	31	1.97
52901661--52901774	43	2.7	42	83	2	147	28	26	14	29	1.95
52908339--52908546	49	4.3	49	75	7	140	25	25	18	31	1.98
52913133--52913193	30	2.0	30	87	0	86	31	22	6	39	1.80
52914621--52914687	25	2.7	25	83	0	80	47	10	19	22	1.79
52915043--52915104	22	2.8	22	83	11	74	29	20	25	24	1.99
52915535--52916370	27	31.0	27	90	0	1145	24	21	18	35	1.95
52916425--52916588	27	6.1	27	80	6	154	31	9	22	36	1.87
52916425--52916588	81	2.0	80	80	5	179	31	9	22	36	1.87
52918729--52918903	27	6.5	27	86	0	208	26	14	18	39	1.90
52919230--52919281	18	2.9	18	94	0	95	25	23	13	38	1.91
52919230--52919296	18	3.7	18	88	4	91	23	22	13	40	1.89
52921351--52921534	40	4.6	39	76	8	156	27	26	21	24	1.99
52921354--52921534	80	2.3	80	82	9	201	27	27	21	24	1.99
52931319--52931427	53	2.1	53	92	0	182	28	13	24	33	1.94
52932869--52932911	22	2.0	22	85	0	59	41	25	20	11	1.86
52943542--52943603	28	2.2	28	100	0	124	37	3	19	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52945056--52945152	30	3.2	30	73	11	92	26	16	28	27	1.97
52946086--52946112	12	2.2	12	100	0	54	40	37	14	7	1.74
52958036--52958097	31	2.0	31	100	0	124	35	9	9	45	1.70
52963974--52964026	25	2.2	24	83	10	63	15	22	22	39	1.91
52967019--52967188	93	1.8	93	89	2	270	29	27	20	23	1.99
52967010--52967181	46	3.7	46	75	14	165	30	27	19	22	1.98
52969106--52969153	15	3.2	15	80	11	62	58	14	14	12	1.64
52969097--52969153	30	2.0	28	89	6	87	57	15	15	10	1.64
52972072--52972242	93	1.8	93	89	0	270	26	28	22	22	1.99
52972067--52972239	46	3.7	46	76	10	181	27	27	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362