genome.fa.s8.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  110  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36284470--36284657	40	4.7	40	87	3	281	26	26	22	25	2.00
36286523--36286569	21	2.2	21	92	0	76	19	19	31	29	1.96
36287463--36287520	2	29.0	2	82	0	62	6	39	0	53	1.28
36301529--36301605	20	3.9	21	83	6	83	38	7	19	33	1.81
36301655--36301790	26	5.3	26	82	4	154	30	18	21	30	1.97
36304084--36304113	15	2.1	15	93	6	53	36	26	6	30	1.82
36308771--36308815	22	2.0	22	83	8	56	22	8	17	51	1.73
36309251--36309294	17	2.5	17	85	7	52	13	22	43	20	1.87
36309746--36309880	27	5.1	26	79	5	144	41	18	8	31	1.81
36309752--36309903	54	2.8	53	82	4	153	40	19	12	26	1.87
36309868--36309957	27	3.3	27	87	0	126	32	22	23	22	1.98
36311358--36311390	18	1.9	17	88	11	50	42	12	15	30	1.83
36315256--36315419	39	4.2	39	92	0	256	32	20	25	21	1.97
36323268--36323394	39	3.3	39	90	0	200	32	21	25	21	1.98
36323267--36323421	78	2.0	76	82	5	186	31	21	25	20	1.98
36325701--36325732	13	2.5	13	94	0	55	25	21	18	34	1.96
36325856--36326331	250	1.9	250	99	0	934	34	6	21	37	1.80
36336165--36336216	27	1.9	27	84	0	68	32	21	25	21	1.98
36336269--36336320	27	2.0	26	84	3	68	34	21	26	17	1.95
36336974--36337026	27	2.0	27	84	0	70	22	18	22	35	1.95
36336981--36337034	27	2.0	27	85	7	74	24	18	18	38	1.93
36337055--36337175	27	4.5	26	81	8	102	30	9	21	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36338634--36338852	46	4.7	45	77	8	181	22	31	19	26	1.98
36338910--36338947	19	2.0	19	94	0	67	34	23	15	26	1.95
36341868--36341922	26	2.1	26	82	3	65	27	16	20	36	1.93
36346162--36346225	33	2.0	33	82	14	80	28	23	20	28	1.99
36348785--36348850	25	2.6	25	80	9	71	53	7	1	37	1.39
36355974--36355999	13	2.0	13	100	0	52	7	0	30	61	1.24
36357863--36357912	26	1.9	26	84	15	68	32	10	16	42	1.81
36366218--36366402	40	4.7	40	76	8	164	25	21	26	27	1.99
36368067--36368106	17	2.4	17	91	8	64	7	20	45	27	1.78
36368542--36368680	27	5.1	27	77	5	111	35	23	14	27	1.93
36368551--36368654	54	1.9	54	84	0	136	37	22	12	27	1.90
36368639--36368691	27	2.0	27	92	0	88	33	18	20	26	1.96
36369063--36369122	22	2.7	22	78	0	66	20	25	23	31	1.98
36369219--36369290	32	2.2	32	85	0	90	29	16	20	33	1.95
36369822--36369854	18	1.9	17	88	11	50	42	12	15	30	1.83
36381282--36381393	54	2.1	54	83	6	138	21	25	27	25	1.99
36391488--36391709	39	5.6	40	82	5	263	25	23	27	23	2.00
36391488--36391745	79	3.3	79	80	7	274	25	23	26	24	2.00
36391488--36391745	39	6.6	40	78	8	253	25	23	26	24	2.00
36398891--36399115	40	5.6	41	81	6	212	25	23	26	24	2.00
36398891--36399151	80	3.3	80	81	5	287	26	23	26	24	2.00
36398891--36399151	120	2.2	120	81	7	300	26	23	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36409409--36409566	47	3.4	47	97	0	298	27	9	14	48	1.75
36412414--36412588	46	3.8	46	76	8	158	30	17	28	24	1.97
36412453--36412605	48	3.2	47	73	7	148	30	16	28	24	1.96
36412448--36412621	94	1.9	94	83	2	233	31	16	27	24	1.97
36417415--36417450	18	2.0	18	88	0	54	36	13	25	25	1.93
36420082--36420205	46	2.7	47	82	11	166	29	19	29	21	1.98
36420268--36420390	49	2.5	49	82	3	151	29	21	26	22	1.99
36426466--36426515	27	1.9	26	84	8	66	34	6	10	50	1.60
36437630--36437694	29	2.2	29	94	0	112	18	26	30	24	1.98
36440819--36440913	42	2.3	42	90	3	147	32	13	23	30	1.93
36450123--36450200	27	2.8	27	81	11	88	28	6	19	46	1.74
36450703--36450755	21	2.5	21	84	0	70	13	33	33	18	1.90
36452921--36452974	26	2.1	26	92	0	90	42	5	20	31	1.75
36462632--36462695	32	2.0	32	100	0	128	34	18	6	40	1.76
36465917--36466227	47	6.6	46	69	18	153	29	18	27	23	1.98
36465913--36466129	94	2.3	94	82	4	260	28	18	29	23	1.98
36466990--36467107	55	2.2	55	84	4	150	20	23	30	25	1.98
36468434--36468805	47	7.9	47	69	9	195	28	19	29	22	1.98
36468441--36468802	94	3.8	93	73	11	299	28	19	29	23	1.98
36483529--36483631	37	2.8	37	92	0	170	26	32	18	23	1.97
36483772--36484239	48	9.8	48	92	2	780	30	27	6	35	1.83
36483778--36484239	237	1.9	241	92	2	788	30	27	6	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36487541--36487587	23	2.0	23	83	0	58	23	31	8	36	1.85
36490468--36490520	27	2.1	26	82	10	65	32	1	18	47	1.60
36507740--36507859	6	19.3	6	67	19	59	50	13	15	20	1.77
36507782--36507851	31	2.3	31	87	0	104	52	14	12	20	1.73
36507996--36508055	27	2.3	26	82	8	68	36	20	21	21	1.95
36508094--36508145	27	2.0	26	84	3	68	34	21	26	17	1.95
36508390--36508637	27	9.3	27	84	1	275	25	19	18	36	1.94
36508399--36508631	80	2.9	80	83	3	288	24	21	18	35	1.95
36508390--36508635	107	2.3	107	85	0	339	25	19	18	36	1.95
36508591--36509125	27	19.8	26	82	4	467	31	9	20	38	1.86
36508389--36508634	53	4.6	53	79	3	190	24	19	18	36	1.95
36508730--36509125	27	14.7	27	89	0	558	31	9	20	38	1.84
36508676--36509125	81	5.6	81	87	0	569	31	9	20	38	1.85
36512784--36512925	40	3.6	40	90	2	216	24	27	23	24	2.00
36514703--36514827	39	3.2	39	87	2	171	28	27	21	23	1.99
36520574--36520750	39	4.6	39	81	7	143	28	29	22	20	1.98
36520606--36520768	77	2.1	78	82	6	190	26	30	22	20	1.98
36520644--36520768	39	3.2	39	93	1	198	28	30	20	20	1.98
36522089--36522134	24	1.9	24	86	0	65	54	13	13	19	1.71
36522115--36522206	31	3.0	31	90	0	121	48	14	15	21	1.80
36522127--36522223	31	3.1	31	87	1	113	51	11	14	22	1.74
36522360--36522419	27	2.3	26	82	8	68	36	20	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36522458--36522509	27	2.0	26	84	3	68	34	21	26	17	1.95
36522754--36522921	27	6.3	27	83	1	212	25	19	19	36	1.95
36522960--36523359	27	14.9	27	85	1	444	31	9	20	39	1.83
36522957--36523359	54	7.5	54	88	1	540	31	9	20	38	1.84
36522957--36523352	107	3.7	108	88	1	562	31	9	20	39	1.84
36529623--36529747	63	2.0	63	96	0	232	42	16	11	30	1.82
36534724--36534865	27	5.3	27	78	6	144	40	22	8	28	1.83
36534724--36534874	81	1.9	81	84	2	205	39	23	7	29	1.83
36534875--36535180	27	11.3	27	89	0	459	28	21	8	41	1.82
36534868--36535180	54	5.8	54	93	0	527	28	21	8	41	1.82
36535191--36535289	27	3.7	27	79	0	117	46	21	6	26	1.74
36534876--36535227	81	4.3	81	87	0	461	30	20	8	40	1.82
36535191--36535315	27	4.6	27	75	4	90	44	20	6	28	1.76
36535309--36535493	27	6.9	27	87	0	253	35	18	22	23	1.96
36535246--36535493	54	4.6	53	84	3	230	36	18	18	26	1.94
36535898--36536004	6	17.3	6	69	19	69	19	17	14	47	1.82
36535901--36536021	25	4.6	25	75	15	102	19	17	14	48	1.81
36535908--36535965	19	3.4	19	65	30	58	18	17	17	46	1.84
36535898--36535968	31	2.3	31	100	0	142	19	15	15	49	1.80
36543971--36544067	24	4.0	24	82	5	124	39	3	37	20	1.69
36545284--36545344	27	2.3	27	82	5	70	39	16	11	32	1.84
36545463--36545520	27	2.1	27	84	6	73	17	22	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36545478--36545566	43	2.1	42	93	2	151	19	21	19	40	1.92
36551818--36551923	24	4.4	24	84	4	124	38	4	37	18	1.72
36553209--36553292	27	3.1	27	87	1	116	16	25	22	35	1.95
36563576--36563636	30	2.0	30	87	0	86	31	22	6	39	1.80
36566040--36566147	53	2.0	53	98	0	207	37	16	14	31	1.89
36568914--36568974	30	2.0	30	83	0	77	32	22	6	37	1.80
36570834--36570958	45	2.8	45	84	7	148	30	28	16	24	1.97
36571217--36571383	38	4.4	38	90	3	264	33	23	20	21	1.97
36576941--36577409	48	9.8	48	94	0	785	30	28	6	34	1.82
36580766--36580908	44	3.2	45	81	5	164	30	27	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362