genome.fa.s8.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  143  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47636954--47637096	54	2.7	53	77	7	164	30	11	18	39	1.86
47639356--47639475	25	4.8	25	87	0	168	27	22	24	25	2.00
47639680--47639894	27	8.0	27	84	4	227	23	20	20	36	1.95
47639679--47639896	81	2.7	81	80	4	260	22	19	20	37	1.95
47639891--47639941	26	2.0	26	84	7	68	37	13	13	35	1.85
47639887--47640397	27	18.9	27	80	5	275	33	9	20	37	1.84
47640248--47640385	56	2.5	57	82	5	167	31	10	19	38	1.86
47642665--47642758	25	3.8	24	90	6	152	25	25	25	23	2.00
47642965--47643208	27	9.1	27	85	0	301	25	20	17	36	1.95
47643196--47643401	81	2.6	81	85	5	249	29	8	19	42	1.81
47643196--47643401	27	7.7	27	81	5	195	29	8	19	42	1.81
47643196--47643706	27	18.9	27	75	9	175	32	9	20	37	1.84
47643395--47643577	81	2.3	81	88	0	267	38	7	22	31	1.83
47643395--47643598	81	2.5	81	85	0	237	37	7	22	32	1.83
47643395--47643577	54	3.4	54	85	0	240	38	7	22	31	1.83
47650222--47650298	36	2.1	36	90	0	118	25	32	16	24	1.96
47650413--47650705	47	6.3	47	89	3	430	28	30	9	32	1.88
47652115--47652177	23	2.7	22	73	23	58	11	22	1	65	1.33
47655614--47655660	20	2.3	20	85	0	67	21	12	36	29	1.91
47656808--47656854	20	2.3	20	81	0	58	23	12	34	29	1.92
47660826--47660904	37	2.1	37	90	0	122	25	31	18	24	1.98
47661023--47661567	47	11.5	47	94	1	901	29	30	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47667531--47667593	21	3.0	21	88	2	90	30	3	33	33	1.74
47669949--47669995	21	2.2	22	84	3	60	14	25	2	57	1.49
47672931--47673114	40	4.6	39	77	8	165	27	27	21	23	1.99
47672894--47673114	80	2.8	80	78	7	193	26	27	21	24	1.99
47672934--47673114	80	2.3	80	83	9	210	27	27	21	23	1.99
47680759--47680842	38	2.2	39	80	10	100	22	28	22	26	1.99
47680821--47681000	79	2.3	80	83	8	217	27	27	21	23	1.99
47680818--47681000	40	4.6	40	80	8	187	27	27	20	24	1.99
47683736--47683812	36	2.1	36	83	4	93	25	31	18	24	1.97
47683931--47684281	47	7.5	47	92	1	569	28	29	8	32	1.87
47684164--47684281	46	2.6	41	98	1	137	28	29	8	33	1.87
47687567--47687830	40	6.8	39	82	8	283	24	28	22	24	1.99
47687580--47687830	39	6.5	40	85	8	306	24	28	22	24	2.00
47687571--47687830	115	2.2	115	83	9	332	24	28	22	24	2.00
47688205--47688283	29	2.7	29	86	5	106	27	32	15	24	1.95
47688267--47688362	41	2.4	40	92	7	167	27	33	15	23	1.95
47690207--47690284	36	2.1	37	88	2	113	25	30	19	24	1.98
47690401--47691037	47	13.5	47	93	2	1055	29	29	8	32	1.87
47690401--47691037	96	6.7	94	93	3	1055	29	29	8	32	1.87
47690401--47691037	143	4.5	141	92	3	1055	29	29	8	32	1.87
47693596--47693660	7	9.0	7	82	12	69	29	0	1	69	0.98
47693616--47693659	20	2.2	20	91	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47693593--47693687	8	11.9	8	80	12	65	30	0	2	67	1.02
47694673--47694854	7	25.6	7	72	11	75	42	35	0	20	1.57
47694702--47694794	22	4.3	22	75	6	84	41	37	0	20	1.52
47694802--47694903	21	4.8	21	74	2	96	50	24	1	22	1.59
47694723--47694903	7	25.6	7	72	10	82	48	29	1	20	1.57
47695249--47695344	40	2.3	42	83	3	124	28	16	19	35	1.94
47695406--47695523	40	3.0	40	89	0	173	27	23	19	28	1.98
47698477--47698549	29	2.5	29	88	4	103	19	23	36	20	1.95
47702267--47702313	20	2.3	20	85	0	67	46	36	4	12	1.62
47706610--47706662	14	3.7	14	79	20	65	22	22	11	43	1.85
47711710--47712097	132	2.9	131	83	4	381	30	17	24	27	1.97
47711612--47712632	176	5.8	176	80	7	1036	30	16	24	27	1.97
47711669--47712980	264	5.0	264	88	3	1779	31	16	24	27	1.97
47711889--47712980	132	8.3	132	92	1	1760	31	16	24	27	1.97
47713236--47713285	20	2.5	20	90	0	82	42	36	4	18	1.69
47715218--47715300	27	3.3	27	63	27	72	32	30	4	32	1.79
47715180--47715350	49	3.5	49	96	3	303	28	31	8	32	1.86
47715180--47715371	98	2.0	94	84	11	250	31	29	7	31	1.85
47718908--47718946	3	12.7	3	94	5	69	35	0	0	64	0.94
47732808--47732894	43	2.0	43	100	0	174	34	9	13	42	1.77
47734819--47734937	43	2.8	41	74	13	105	26	28	17	26	1.98
47734904--47735129	95	2.4	97	88	3	341	27	29	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47734904--47735129	48	4.7	48	90	2	337	27	29	16	25	1.97
47737720--47738040	98	3.4	95	76	12	264	23	27	18	30	1.98
47737842--47738040	46	4.2	47	79	10	194	23	26	18	32	1.97
47745599--47745957	49	7.6	49	76	10	200	23	27	20	28	1.99
47745790--47745957	46	3.6	46	87	4	212	23	24	20	32	1.98
47752718--47752749	15	2.0	17	88	11	50	21	18	21	37	1.94
47760572--47760745	46	3.8	48	79	8	168	22	29	21	26	1.99
47767027--47767060	17	2.0	17	100	0	68	35	35	17	11	1.87
47767028--47767064	17	2.3	16	90	9	58	37	37	16	8	1.78
47767794--47767963	94	1.8	92	84	5	234	26	30	16	26	1.97
47780673--47780704	12	2.6	13	90	9	50	50	21	6	21	1.71
47781164--47781314	43	3.5	42	72	11	126	27	23	20	27	1.99
47796615--47796675	30	2.0	30	83	0	77	31	22	8	37	1.84
47803065--47803112	23	2.1	23	96	0	87	41	0	8	50	1.33
47815349--47815423	27	2.8	27	85	4	89	22	25	18	33	1.97
47822741--47822918	27	6.6	26	80	6	169	26	16	28	28	1.97
47822742--47822897	82	1.9	81	86	3	224	26	16	28	28	1.97
47822738--47822918	82	2.2	81	82	2	220	27	16	28	28	1.97
47822823--47822929	27	3.9	27	81	1	79	26	15	28	28	1.96
47830886--47831062	27	6.6	26	78	7	151	27	15	28	28	1.96
47830914--47831062	55	2.8	53	81	7	165	27	16	29	26	1.97
47830887--47831042	82	1.9	81	84	3	206	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47832490--47832648	40	4.0	40	88	1	232	23	23	27	25	2.00
47841047--47841257	40	5.1	40	81	13	207	25	28	23	22	1.99
47841116--47841209	47	2.0	47	97	0	179	25	24	25	24	2.00
47841163--47841257	41	2.3	40	87	8	131	25	27	26	21	1.99
47843818--47844062	40	6.1	40	87	4	318	23	21	27	27	1.99
47849394--47849495	27	3.8	26	88	8	134	20	24	20	34	1.97
47850802--47850870	34	2.0	34	97	0	129	34	5	20	39	1.76
47852291--47852360	34	2.1	34	94	0	122	37	7	20	35	1.80
47854355--47854439	42	2.0	42	81	4	100	25	15	25	32	1.95
47861562--47861824	40	6.6	40	87	3	316	24	20	28	26	1.99
47861601--47861859	80	3.3	80	84	3	238	25	20	28	25	1.99
47869092--47869354	40	6.6	40	87	3	316	24	20	28	26	1.99
47869131--47869389	80	3.3	80	84	3	238	25	20	28	25	1.99
47870832--47870980	39	3.8	39	97	0	262	20	21	29	28	1.98
47870832--47871029	78	2.6	78	86	2	256	22	21	28	27	1.99
47879576--47879678	44	2.3	44	86	3	136	28	15	26	30	1.96
47882735--47882804	28	2.5	28	88	9	99	27	14	27	31	1.95
47892055--47892206	37	4.1	37	93	0	241	25	32	20	21	1.98
47892369--47892746	47	8.0	47	85	4	499	27	29	11	32	1.91
47892429--47892650	25	9.2	24	69	22	130	29	28	9	31	1.89
47892369--47892746	94	4.0	94	87	4	571	27	29	11	32	1.91
47898847--47898956	29	3.9	28	78	4	112	25	16	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47907261--47907344	29	2.9	29	80	0	96	27	16	27	28	1.97
47907258--47907368	58	1.9	57	83	1	141	26	16	30	27	1.96
47909498--47909623	42	3.0	42	90	4	182	25	18	23	32	1.97
47910432--47910474	23	1.9	22	85	4	59	23	0	25	51	1.49
47912652--47912827	46	3.8	46	79	14	209	20	20	29	29	1.98
47912649--47912820	93	1.8	93	95	2	310	20	20	29	28	1.98
47920208--47920336	46	2.8	46	92	2	215	19	19	29	31	1.96
47923786--47923851	28	2.4	26	73	16	71	40	22	19	16	1.91
47930544--47930587	20	2.3	19	80	7	52	47	2	13	36	1.56
47933126--47933237	27	4.2	26	82	7	125	36	22	24	16	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362