genome.fa.s8.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  122  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40341215--40341434	118	1.9	120	82	9	281	24	27	22	26	2.00
40352444--40352472	14	2.1	14	100	0	58	34	34	24	6	1.82
40353950--40354171	39	5.7	40	82	7	240	25	21	27	25	1.99
40353950--40354169	79	2.8	78	81	6	248	25	21	27	25	1.99
40354029--40354204	79	2.3	79	82	5	198	25	21	28	24	1.99
40361874--40362096	39	5.7	40	82	8	242	25	21	27	25	1.99
40361874--40362129	118	2.2	119	79	6	263	26	21	27	24	1.99
40361954--40362129	79	2.3	79	82	5	198	25	21	28	24	1.99
40364327--40364471	63	2.3	63	84	3	195	26	20	27	26	1.99
40365113--40365183	22	3.2	21	76	4	70	26	15	14	43	1.85
40365112--40365207	44	2.2	44	80	0	111	21	18	14	44	1.86
40366159--40366192	17	2.0	17	100	0	68	41	5	11	41	1.66
40366183--40366208	5	5.2	5	100	0	52	38	0	23	38	1.55
40369891--40369932	21	1.9	21	85	9	57	52	2	0	45	1.13
40370275--40370308	17	2.0	17	100	0	68	17	5	11	64	1.45
40370425--40370531	51	2.2	48	84	5	133	56	8	2	32	1.44
40370920--40370966	20	2.3	20	85	0	58	55	8	8	27	1.59
40374452--40374504	26	2.0	26	96	0	97	41	3	9	45	1.54
40378328--40378362	4	8.8	4	100	0	70	25	0	22	51	1.48
40378375--40378440	33	2.0	33	100	0	132	45	18	15	21	1.85
40386072--40386249	82	2.2	82	85	1	230	43	12	14	29	1.82
40386410--40386439	6	4.8	6	95	4	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40389320--40389491	43	4.0	43	78	10	181	23	16	27	31	1.96
40393844--40393934	44	2.1	44	100	0	182	30	10	25	32	1.90
40399151--40399213	27	2.3	27	80	0	72	26	14	25	33	1.94
40401007--40401051	18	2.5	18	81	0	54	31	24	15	28	1.96
40402049--40402182	58	2.3	59	84	6	164	49	5	0	44	1.27
40402075--40402204	60	2.1	61	78	10	142	48	6	0	44	1.33
40404138--40404163	2	13.0	2	100	0	52	50	0	0	50	1.00
40404497--40404535	16	2.4	16	83	8	53	48	0	0	51	1.00
40404497--40404542	15	2.9	16	78	12	51	45	0	0	54	0.99
40404878--40404908	2	15.5	2	100	0	62	48	0	0	51	1.00
40405151--40405274	59	2.1	60	90	3	198	41	12	4	41	1.62
40409288--40409405	43	2.8	42	76	6	130	23	16	25	33	1.96
40411496--40411704	46	4.5	45	77	12	192	28	20	29	22	1.98
40415379--40415420	16	2.6	16	84	3	57	42	2	0	54	1.13
40420761--40420987	48	4.8	48	77	7	214	27	21	23	27	1.99
40422330--40422501	93	1.8	93	92	0	290	28	28	20	22	1.99
40422329--40422497	46	3.7	45	78	7	187	28	28	20	21	1.98
40424204--40424376	93	1.9	93	91	2	285	28	30	20	20	1.97
40424197--40424372	46	3.8	46	76	11	189	30	30	19	19	1.97
40425692--40425751	30	2.0	30	90	0	93	30	25	8	36	1.85
40432430--40432600	93	1.8	93	94	0	306	28	29	21	21	1.98
40432425--40432597	46	3.7	46	79	13	210	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40433021--40433080	30	2.0	30	90	0	93	30	25	8	36	1.85
40435429--40435506	39	2.0	39	100	0	156	35	0	25	38	1.56
40437616--40437721	27	4.0	27	75	8	101	39	18	15	26	1.90
40441555--40441688	43	3.1	43	75	11	125	33	24	16	25	1.96
40441555--40441644	41	2.1	43	85	4	121	34	24	15	25	1.95
40441625--40441734	44	2.5	44	93	0	184	30	27	18	23	1.97
40441812--40441883	20	3.6	20	88	0	99	44	12	6	36	1.69
40450950--40450983	18	1.9	17	88	5	50	38	0	11	50	1.39
40450949--40450983	17	1.9	19	88	11	56	37	0	11	51	1.38
40453340--40453376	12	2.8	14	84	12	51	81	2	5	10	0.96
40458814--40458894	29	2.9	29	82	7	89	41	2	2	53	1.27
40458819--40458904	25	3.3	25	80	6	82	41	2	2	53	1.26
40458913--40458996	10	8.7	10	70	17	52	46	0	1	52	1.08
40458865--40459005	35	4.5	33	70	22	113	43	0	1	55	1.08
40458847--40459003	25	6.6	23	71	15	90	43	0	1	54	1.11
40458848--40459052	57	3.5	58	81	7	193	43	0	1	54	1.15
40461038--40461159	45	2.7	44	82	3	163	23	14	27	34	1.94
40463001--40463046	6	7.3	6	90	9	74	80	2	0	17	0.81
40463068--40463110	9	4.8	9	88	0	59	23	9	25	41	1.84
40463068--40463126	27	2.2	27	84	0	73	23	8	23	44	1.81
40463199--40463258	29	2.1	29	84	3	77	36	5	16	41	1.70
40471590--40471677	43	2.0	43	97	0	167	60	0	6	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40477187--40477212	13	2.0	13	100	0	52	38	15	7	38	1.76
40480197--40480235	19	2.1	19	85	0	51	12	5	7	74	1.20
40480200--40480265	28	2.4	28	94	2	116	12	3	9	75	1.14
40484679--40485021	41	8.3	41	91	2	528	37	25	18	18	1.94
40485031--40485127	45	2.2	45	98	1	187	38	22	10	28	1.87
40491767--40491847	42	1.9	42	92	0	135	37	18	13	30	1.90
40498834--40498945	42	2.6	42	80	5	118	27	22	19	30	1.98
40501213--40501668	43	10.6	43	96	0	813	30	32	25	10	1.90
40501666--40501783	38	3.1	38	83	1	128	29	24	21	24	1.99
40507418--40507730	46	6.6	48	73	11	184	24	29	18	27	1.98
40507414--40507730	145	2.2	140	79	10	317	24	29	18	27	1.98
40509719--40510604	190	4.7	188	94	1	1493	29	28	8	33	1.86
40509719--40510604	237	3.7	237	96	0	1578	29	28	8	33	1.86
40509719--40510604	47	18.6	47	94	1	1493	29	28	8	33	1.86
40520744--40520828	31	2.8	31	90	1	145	24	24	17	32	1.97
40521033--40521138	25	4.3	25	85	3	99	27	22	22	27	1.99
40521046--40521140	25	3.8	25	88	0	136	27	22	23	27	1.99
40521188--40521224	11	3.5	11	82	14	51	35	18	8	37	1.81
40521188--40521236	11	4.7	11	80	12	50	34	18	10	36	1.85
40532124--40532159	19	1.9	19	88	5	56	30	5	0	63	1.17
40535677--40535721	19	2.6	17	86	10	56	28	8	0	62	1.25
40537301--40537347	24	1.9	25	87	12	71	21	2	0	76	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40540816--40540846	11	2.8	11	90	0	53	64	3	0	32	1.09
40545505--40545630	43	3.0	42	82	2	146	29	26	14	29	1.95
40547269--40547618	180	1.9	180	99	0	691	33	21	16	28	1.95
40548631--40548663	15	2.2	15	100	0	66	21	0	24	54	1.45
40549691--40549772	18	4.6	18	92	0	119	26	14	15	42	1.86
40551021--40551145	6	20.3	6	69	16	78	47	13	20	19	1.82
40551047--40551117	19	3.8	19	81	10	92	45	15	22	16	1.85
40551030--40551114	37	2.3	37	89	4	127	47	12	22	17	1.82
40551079--40551145	25	2.7	25	88	0	98	47	13	19	19	1.82
40551262--40551335	27	2.8	27	86	10	107	37	21	22	17	1.94
40551510--40551565	22	2.5	22	83	11	78	32	17	26	23	1.97
40551953--40552120	27	6.2	27	85	4	214	25	20	18	35	1.95
40552105--40552208	27	3.8	26	67	20	61	29	8	27	33	1.87
40553338--40553383	20	2.3	20	84	0	65	8	23	19	47	1.77
40561358--40561396	20	1.9	21	84	5	53	15	15	28	41	1.87
40573570--40573648	34	2.4	34	82	6	90	31	22	24	21	1.98
40574927--40574989	28	2.2	29	75	13	69	50	0	4	44	1.23
40586037--40586172	68	2.0	68	100	0	272	41	8	13	36	1.75
40606076--40606115	21	1.9	21	84	0	53	25	7	7	60	1.50
40607578--40607644	27	2.5	27	80	4	82	31	17	11	38	1.87
40607623--40607735	27	4.2	27	79	2	111	32	10	18	38	1.85
40609024--40609199	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40609021--40609192	93	1.8	93	96	0	317	20	21	29	27	1.98
40616513--40616685	46	3.7	46	76	13	192	20	19	30	30	1.97
40616507--40616678	93	1.8	93	96	0	317	20	20	29	29	1.97
40618023--40618106	27	3.2	26	77	5	96	29	11	21	36	1.89
40617993--40618106	54	2.1	54	88	1	167	29	11	20	38	1.87
40631539--40632185	47	13.6	47	93	1	1033	32	8	29	29	1.86
40631539--40632185	96	6.8	96	93	2	1049	32	8	29	29	1.86
40636376--40636510	47	2.9	47	81	6	166	27	19	31	21	1.97
40638218--40638455	47	5.1	47	91	0	350	26	28	10	34	1.89
40638265--40638383	22	5.1	22	62	28	59	24	28	13	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362