genome.fa.s8.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  112  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36841621--36841685	15	4.4	15	84	9	89	10	15	12	61	1.56
36844053--36844215	41	3.7	41	81	13	164	20	20	30	27	1.98
36844053--36844118	20	3.2	20	64	19	55	21	19	30	28	1.98
36844050--36844170	41	2.8	43	86	11	174	22	19	30	27	1.98
36856016--36856041	12	2.2	12	100	0	52	38	7	23	30	1.83
36863542--36863669	39	3.3	39	85	0	148	32	20	24	22	1.98
36870563--36870864	27	11.2	27	86	2	376	29	22	7	40	1.81
36870563--36870864	81	3.7	81	90	0	426	29	22	7	40	1.81
36871100--36871150	27	1.9	26	84	4	66	19	27	17	35	1.94
36871368--36871477	31	3.5	31	81	7	127	19	20	13	47	1.82
36871368--36871498	6	21.3	6	72	16	99	19	19	13	48	1.81
36871368--36871489	37	3.5	37	80	13	157	18	19	13	48	1.81
36873360--36873436	27	2.9	27	82	0	91	32	19	22	25	1.97
36873422--36873517	27	3.6	27	94	0	156	43	20	6	29	1.76
36873408--36873517	54	2.0	54	84	3	141	40	21	10	28	1.86
36873514--36873626	27	4.2	27	90	0	163	30	23	6	39	1.79
36873500--36873626	54	2.4	54	82	0	164	33	22	6	37	1.80
36873862--36873913	27	2.0	26	84	3	68	17	26	21	34	1.95
36874130--36874239	31	3.5	31	81	7	127	19	20	13	47	1.82
36874130--36874260	6	21.3	6	72	16	99	19	19	13	48	1.81
36874130--36874251	37	3.5	37	80	13	157	18	19	13	48	1.81
36880730--36880808	31	2.5	31	93	0	131	26	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36880832--36880923	42	2.2	42	88	0	130	34	19	15	30	1.93
36881056--36881140	26	3.3	26	82	6	95	25	24	18	30	1.98
36881942--36882025	27	3.1	27	89	3	125	21	26	21	30	1.98
36882087--36882138	27	1.9	27	88	7	79	34	11	13	40	1.81
36882692--36882727	16	2.2	16	95	0	63	50	11	25	13	1.75
36884460--36884730	46	5.8	45	76	9	258	23	21	25	29	1.99
36884458--36884722	93	2.8	93	92	0	422	23	21	26	28	1.99
36887710--36887774	15	4.4	15	77	9	71	10	15	13	60	1.60
36887706--36887774	30	2.3	31	82	9	90	10	14	17	57	1.63
36890500--36890815	46	6.8	46	83	3	393	22	20	27	29	1.99
36900709--36900842	44	3.1	43	84	7	182	36	24	14	23	1.93
36900673--36900842	43	4.0	42	80	6	171	35	25	15	23	1.94
36902227--36902251	13	1.9	13	100	0	50	28	48	24	0	1.52
36903967--36904064	27	3.5	28	90	2	135	26	13	28	31	1.94
36903995--36904077	27	3.0	27	87	5	96	30	12	24	33	1.91
36921871--36922077	114	1.8	114	89	0	324	24	20	25	29	1.99
36921869--36922110	23	10.6	23	80	6	231	24	20	24	30	1.98
36927539--36927636	49	2.0	49	88	4	144	32	11	37	18	1.86
36936794--36936850	27	2.1	27	93	0	96	29	10	26	33	1.90
36936875--36937038	28	5.9	28	70	2	114	34	18	12	33	1.89
36947649--36947908	129	2.0	129	98	0	502	33	20	14	31	1.93
36959003--36959062	30	2.0	29	87	3	84	30	25	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36968460--36968725	50	5.3	50	85	3	329	38	18	12	30	1.88
36972168--36972364	27	7.3	27	85	2	243	25	19	18	36	1.95
36981467--36981511	22	2.0	22	100	0	90	40	17	13	28	1.88
36985681--36985728	24	2.0	24	87	0	69	31	10	18	39	1.85
36987169--36987285	42	2.7	43	82	6	139	24	17	24	33	1.96
36990148--36990218	33	2.2	33	82	5	81	28	25	19	26	1.99
36990353--36990416	23	2.8	23	82	0	83	40	21	18	18	1.91
36997123--36997159	9	4.1	9	86	13	58	45	10	10	32	1.74
36997201--36997262	29	2.1	31	90	6	101	20	33	0	45	1.52
36998352--36998545	44	4.5	44	85	7	229	24	17	24	34	1.96
37001126--37001185	27	2.3	26	85	2	75	35	20	23	21	1.96
37001909--37002069	27	6.0	27	85	2	207	26	20	18	34	1.96
37002064--37002161	27	3.6	27	84	6	128	39	8	18	33	1.80
37002127--37002206	38	2.1	38	90	0	124	41	8	22	27	1.83
37002097--37002223	65	2.0	65	96	0	236	39	8	21	30	1.83
37002165--37002231	27	2.5	27	95	0	116	38	5	25	29	1.80
37004871--37005041	43	4.0	43	75	7	152	31	27	15	25	1.96
37009577--37009674	24	4.0	24	86	1	133	34	3	39	22	1.70
37009577--37009674	48	2.0	49	90	2	153	34	3	39	22	1.70
37011069--37011179	27	4.2	26	86	5	141	17	25	21	36	1.95
37011069--37011179	54	2.1	53	87	1	159	17	25	21	36	1.95
37011242--37011280	19	2.0	18	85	14	51	20	0	51	28	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37015980--37016043	32	2.0	32	90	0	101	20	17	28	34	1.95
37017463--37017560	24	4.0	24	85	1	124	34	2	39	23	1.66
37017463--37017560	48	2.0	49	88	2	144	34	2	39	23	1.66
37018952--37019062	27	4.1	27	83	5	136	18	25	20	36	1.95
37025259--37025348	24	3.8	24	90	0	135	34	4	38	22	1.74
37025258--37025363	24	4.4	23	85	4	122	37	5	36	19	1.76
37026752--37026862	27	4.2	26	83	5	132	15	24	23	36	1.93
37026752--37026862	54	2.1	53	86	1	150	15	24	23	36	1.93
37027891--37027926	17	2.1	17	100	0	72	36	27	5	30	1.80
37029586--37029698	41	2.8	41	78	5	115	30	18	23	28	1.98
37029736--37029768	13	2.4	14	90	5	50	15	0	39	45	1.46
37030261--37030296	14	2.6	14	86	0	54	38	41	0	19	1.52
37030265--37030317	21	2.5	21	81	9	63	39	35	0	24	1.56
37030195--37030325	8	17.7	7	70	21	56	41	35	1	21	1.63
37030333--37030374	13	3.0	14	75	10	50	45	26	0	28	1.54
37030343--37030388	22	2.2	21	88	7	67	52	23	0	23	1.48
37030349--37030400	22	2.5	21	81	9	61	57	17	0	25	1.40
37030888--37030960	7	10.1	7	78	19	71	19	1	38	41	1.60
37034488--37034524	3	12.0	3	88	5	56	0	0	29	70	0.88
37034962--37035068	9	12.1	9	71	9	60	44	19	2	32	1.65
37034936--37035060	43	3.1	42	80	15	163	46	17	2	33	1.61
37034970--37035060	36	2.6	35	84	6	121	45	18	3	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37040176--37040204	14	2.1	14	93	6	51	37	0	6	55	1.27
37040611--37040665	21	2.6	21	85	5	76	30	16	49	3	1.63
37041062--37041153	43	2.1	43	87	0	130	30	26	15	28	1.96
37049253--37049289	19	1.9	19	94	0	65	37	21	10	29	1.88
37059404--37059438	13	2.8	13	91	4	54	74	0	11	14	1.08
37065791--37065840	24	2.0	25	81	11	59	10	34	2	54	1.45
37066065--37066100	19	1.9	18	94	5	63	36	0	8	55	1.30
37067335--37067401	31	2.2	31	86	0	89	23	22	13	40	1.89
37067595--37067715	25	5.0	24	85	7	156	28	23	19	28	1.98
37067616--37067713	47	2.1	48	90	1	153	29	22	19	28	1.98
37067616--37067713	23	4.1	23	90	4	142	29	22	19	28	1.98
37067764--37067830	20	3.3	20	93	0	116	32	20	11	34	1.90
37067764--37067819	11	5.5	11	71	16	57	32	19	12	35	1.89
37067867--37067914	25	1.9	25	86	0	69	25	16	25	33	1.96
37073874--37073908	18	2.0	18	94	5	63	28	14	17	40	1.88
37074788--37074840	27	2.0	27	85	3	72	24	16	18	39	1.91
37075151--37075205	28	2.0	28	85	7	76	29	36	14	20	1.92
37078053--37078244	27	7.1	27	83	1	215	33	18	20	26	1.96
37078053--37078218	54	3.1	54	87	0	242	34	17	21	27	1.95
37091833--37091947	47	2.5	47	83	7	128	27	31	16	24	1.96
37094040--37094095	26	2.2	26	96	0	103	39	17	14	28	1.89
37094215--37094338	41	3.0	41	85	0	176	29	32	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37094603--37094785	27	6.7	27	80	8	158	28	8	20	42	1.82
37094605--37094785	54	3.3	53	81	5	191	28	8	20	42	1.81
37099098--37099166	34	2.0	35	85	2	95	20	20	13	46	1.83
37100819--37100923	41	2.6	41	87	3	142	18	37	21	22	1.94
37104327--37104393	33	2.0	33	100	0	134	38	23	8	28	1.85
37106386--37106410	11	2.3	11	100	0	50	16	8	36	40	1.77
37107419--37107579	42	3.8	42	84	5	182	22	20	27	29	1.99
37111171--37111341	39	4.3	39	84	6	202	25	21	28	25	1.99
37111118--37111341	79	2.8	79	82	6	256	25	20	28	25	1.99
37111198--37111374	79	2.2	80	82	4	200	25	21	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362