genome.fa.s8.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  169  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55645849--55645998	40	3.8	40	79	1	158	36	25	16	22	1.94
55646006--55646184	62	3.0	58	86	6	259	26	25	26	21	2.00
55648020--55648077	30	2.0	29	82	3	71	25	25	6	41	1.80
55655557--55655615	30	2.0	30	83	6	75	27	23	6	42	1.79
55656887--55656935	21	2.4	21	76	10	57	34	20	2	42	1.64
55674708--55674941	64	3.6	64	81	5	220	25	27	15	31	1.96
55681788--55682078	40	7.3	39	85	6	336	28	28	19	23	1.98
55681788--55682078	80	3.7	80	83	5	383	28	28	19	23	1.98
55685051--55685141	28	3.3	28	84	1	112	19	14	36	29	1.91
55685440--55685773	27	12.7	27	82	6	319	38	20	9	31	1.85
55685519--55685558	21	1.9	21	89	0	62	47	27	2	22	1.64
55688627--55688725	28	3.5	28	91	0	162	19	14	36	30	1.91
55689084--55689456	107	3.5	107	82	6	409	39	18	9	32	1.83
55689084--55689458	27	14.0	27	80	3	321	39	18	9	32	1.83
55689408--55689472	27	2.4	27	89	0	94	38	18	16	26	1.92
55689409--55689501	27	3.5	27	81	7	93	33	20	19	26	1.96
55710467--55710544	23	3.3	23	70	20	72	32	8	28	30	1.88
55710468--55710699	45	5.1	47	90	7	347	32	11	29	26	1.91
55710468--55710699	92	2.6	90	90	6	346	32	11	29	26	1.91
55710813--55710920	37	3.0	36	91	2	173	23	18	30	27	1.98
55712189--55712419	40	5.8	40	88	1	338	25	22	26	25	2.00
55716418--55716609	47	4.1	47	91	1	298	32	11	29	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55716443--55716518	22	3.3	22	67	22	66	31	13	30	25	1.93
55716492--55716567	23	3.2	25	62	24	63	28	13	34	23	1.92
55718052--55718234	79	2.3	81	85	7	241	25	27	22	24	2.00
55718031--55718234	40	5.1	40	83	8	247	25	27	22	24	1.99
55724924--55725101	79	2.3	77	84	7	216	26	28	20	24	1.99
55724922--55725101	39	4.6	39	82	7	188	26	28	20	23	1.99
55729980--55730100	26	4.4	28	89	6	167	33	28	12	26	1.92
55729979--55730100	55	2.2	55	85	5	167	32	28	12	26	1.92
55738165--55738287	28	4.4	28	92	2	185	33	27	12	26	1.92
55743720--55743796	20	3.9	21	85	9	101	40	9	16	33	1.81
55743846--55743994	26	5.8	26	85	2	196	26	22	22	28	1.99
55743846--55744007	52	3.2	52	88	6	235	28	21	22	27	1.99
55751810--55751884	20	3.8	20	87	6	102	38	9	17	34	1.82
55751934--55752082	26	5.8	26	87	2	205	26	23	22	27	1.99
55751934--55752095	52	3.2	52	90	6	244	28	22	22	27	1.99
55761895--55762044	67	2.2	67	90	4	232	20	27	21	31	1.98
55763310--55764019	363	2.0	363	95	0	1294	41	18	11	28	1.85
55770447--55770523	26	3.1	26	62	24	65	24	14	28	32	1.94
55770440--55770672	49	4.7	49	84	2	304	26	18	26	28	1.98
55770442--55770621	100	1.8	100	95	0	324	27	18	25	28	1.98
55782343--55782392	24	2.1	24	88	0	73	30	12	18	40	1.86
55785977--55786152	46	3.8	46	75	15	173	31	29	19	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55789625--55789797	68	2.5	68	77	14	153	20	27	16	34	1.95
55790911--55790938	8	3.5	8	100	0	56	46	14	10	28	1.78
55792947--55793053	40	2.7	40	94	0	178	22	19	26	31	1.98
55795268--55795478	40	5.3	40	89	4	239	23	20	27	28	1.99
55795896--55799769	968	4.0	967	97	0	7264	31	14	22	31	1.94
55805808--55805959	40	3.8	41	89	3	211	24	21	28	25	1.99
55805808--55805979	80	2.2	80	84	3	213	23	20	27	27	1.99
55811084--55811151	28	2.4	28	92	0	109	30	27	10	30	1.90
55811588--55811642	27	1.9	30	82	10	71	29	25	0	45	1.54
55812414--55812455	19	2.2	19	87	12	59	28	33	4	33	1.78
55818437--55818518	34	2.4	32	80	7	92	29	21	21	26	1.99
55834216--55834309	40	2.4	39	84	10	120	30	27	13	27	1.94
55839419--55839539	61	2.0	61	95	0	215	39	10	19	30	1.85
55840457--55840680	43	5.2	43	87	6	294	33	16	19	31	1.94
55846773--55847001	43	5.3	42	86	4	280	33	16	21	28	1.95
55847968--55848090	34	3.8	33	73	11	114	27	24	22	25	2.00
55848932--55848987	28	2.0	28	100	0	112	35	28	3	32	1.74
55856801--55856885	25	3.4	25	83	0	98	32	16	21	29	1.95
55858868--55859044	52	3.5	50	87	4	239	28	15	29	26	1.96
55858868--55859044	51	3.5	51	88	4	243	28	15	29	26	1.96
55868285--55868457	93	1.9	93	83	0	229	28	21	30	19	1.98
55868337--55868599	140	1.9	141	82	8	340	30	19	28	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55875770--55876139	47	7.9	46	73	14	240	28	20	29	22	1.98
55875784--55876128	94	3.7	93	78	11	357	27	20	29	22	1.98
55875809--55876130	141	2.3	142	79	8	356	28	19	30	21	1.98
55880718--55880967	40	6.3	40	84	5	310	28	28	19	23	1.98
55883370--55883416	22	2.2	21	85	14	62	46	8	17	27	1.76
55884663--55884711	14	3.5	13	81	13	53	48	0	4	46	1.20
55893598--55893656	30	1.9	31	83	10	77	62	0	16	20	1.32
55894786--55894830	23	2.0	23	83	16	58	13	20	26	40	1.89
55900372--55900606	49	4.7	50	81	3	278	25	17	27	30	1.97
55905547--55905639	25	3.8	25	79	1	98	32	21	22	23	1.98
55910604--55910781	27	6.6	27	83	3	205	26	15	28	29	1.96
55910605--55910760	82	1.9	81	88	3	233	26	15	28	29	1.96
55910601--55910781	82	2.2	81	83	2	229	27	15	27	29	1.96
55918781--55918958	27	6.6	27	83	3	205	26	15	28	29	1.96
55918782--55918937	82	1.9	81	88	3	233	26	15	28	29	1.96
55918778--55918958	82	2.2	81	83	2	229	27	15	27	29	1.96
55920981--55921080	49	2.1	47	83	3	119	30	18	31	21	1.96
55928511--55928627	49	2.4	49	81	7	148	26	22	28	23	1.99
55930631--55930743	26	4.5	26	71	13	76	17	25	19	37	1.94
55931219--55931298	42	1.9	42	82	5	99	23	30	25	21	1.99
55938254--55938430	40	4.5	39	84	7	198	24	27	22	24	2.00
55938287--55938430	40	3.6	40	89	3	220	25	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55939491--55939534	18	2.4	18	96	0	79	27	11	25	36	1.90
55960872--55960896	13	1.9	13	100	0	50	8	8	16	68	1.38
55967785--55967973	43	4.4	43	93	1	310	29	34	23	12	1.92
55971673--55971731	30	2.0	30	96	0	109	13	32	25	28	1.94
55973344--55973511	43	3.9	43	92	0	282	29	33	23	13	1.93
55973504--55973587	38	2.2	38	89	0	132	30	28	21	19	1.97
55978735--55978777	22	1.9	22	85	4	59	20	2	53	23	1.57
55979512--55979537	13	2.0	13	100	0	52	30	0	46	23	1.53
56001665--56001695	16	1.9	16	93	0	53	41	12	3	41	1.59
56003813--56003998	72	2.6	72	84	4	225	32	27	16	23	1.96
56006650--56006678	14	2.0	15	93	6	51	51	20	0	27	1.47
56022085--56022124	14	3.0	14	82	10	57	20	5	0	75	0.99
56027105--56027132	13	2.2	13	100	0	56	32	21	10	35	1.88
56033259--56033363	27	3.9	27	78	12	108	18	24	20	36	1.95
56036475--56036534	28	2.1	28	90	0	93	30	36	5	28	1.78
56052445--56052819	47	7.9	48	75	14	266	27	17	30	24	1.97
56056985--56057027	22	2.0	22	90	0	68	37	11	27	23	1.89
56060143--56060269	47	2.7	46	80	15	154	28	17	30	23	1.97
56075310--56075398	27	3.3	27	85	6	110	29	15	17	37	1.91
56075377--56075767	27	14.7	27	78	6	397	30	9	19	39	1.85
56075377--56075767	53	7.3	52	85	5	419	30	9	19	39	1.85
56080058--56080095	18	2.1	19	90	5	60	42	7	13	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56083045--56083229	20	9.2	20	64	9	72	36	16	28	18	1.93
56082973--56083245	80	3.4	78	84	3	350	35	16	26	20	1.94
56083015--56083244	120	1.9	120	88	1	345	36	16	26	20	1.94
56082964--56083245	40	7.1	40	80	4	309	35	16	27	20	1.94
56084673--56084780	54	2.0	54	92	0	180	37	11	18	33	1.86
56089158--56089349	40	4.8	40	92	1	305	23	23	29	23	1.99
56099277--56099478	42	4.6	42	74	10	181	29	23	18	28	1.98
56101825--56101935	27	4.2	26	85	5	141	38	22	22	16	1.92
56101825--56101935	54	2.1	53	87	1	159	38	22	22	16	1.92
56103345--56103415	24	3.0	24	87	2	99	22	40	5	30	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362