genome.fa.s8.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  193  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64578340--64578521	94	1.9	94	81	3	215	29	15	19	35	1.92
64581362--64581533	93	1.8	93	94	0	308	27	29	21	21	1.99
64581355--64581530	46	3.8	46	79	12	207	28	29	21	21	1.98
64581404--64581542	47	3.0	46	75	16	144	29	28	19	22	1.98
64593771--64593825	30	1.9	28	89	10	85	41	5	21	30	1.76
64598480--64598640	43	3.8	43	77	2	137	31	22	16	29	1.96
64598624--64598657	17	2.0	17	100	0	68	29	17	17	35	1.93
64603097--64603145	23	2.1	23	96	0	89	12	10	36	40	1.77
64608355--64608565	40	5.3	40	85	4	212	23	20	26	28	1.99
64621954--64622019	31	2.1	31	86	5	89	36	0	4	59	1.18
64625153--64625213	30	2.1	29	90	3	95	24	16	22	36	1.94
64636175--64636248	25	3.0	25	85	0	112	60	25	1	12	1.39
64637017--64637184	9	18.9	9	72	9	112	35	2	15	47	1.59
64636999--64637177	43	3.9	44	79	16	200	34	2	14	48	1.59
64636995--64637167	36	5.2	34	73	17	132	35	2	14	47	1.57
64637022--64637184	54	3.2	52	78	18	200	34	2	14	47	1.58
64637003--64637199	97	2.0	98	92	1	324	34	3	14	47	1.61
64641069--64641096	8	3.5	8	100	0	56	35	0	21	42	1.53
64641135--64641198	7	9.1	7	78	0	65	21	3	35	39	1.70
64641122--64641198	14	5.5	14	77	0	73	23	2	32	41	1.68
64641135--64641193	21	2.8	21	82	5	75	22	3	33	40	1.70
64641129--64641198	28	2.5	28	85	0	86	22	2	32	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64641755--64641896	41	3.5	41	82	6	171	28	25	17	28	1.98
64641750--64641907	41	3.9	41	81	6	135	27	23	16	32	1.96
64651003--64651136	56	2.4	56	93	0	232	26	12	25	35	1.92
64653519--64653619	27	3.6	27	80	5	103	20	26	21	30	1.98
64653519--64653633	55	2.1	56	82	8	137	19	25	21	33	1.97
64654694--64654727	10	3.3	10	84	8	50	29	8	8	52	1.62
64661179--64661238	28	2.1	28	87	6	86	33	26	8	31	1.86
64661348--64661437	28	3.2	27	84	7	110	21	24	22	32	1.98
64668593--64668729	56	2.4	56	86	2	177	26	14	25	33	1.94
64670740--64670862	46	2.7	46	93	0	210	20	20	29	30	1.97
64672372--64672423	18	2.9	18	82	0	68	44	11	21	23	1.84
64672701--64672886	27	6.9	27	81	4	196	39	18	15	26	1.90
64672698--64672886	81	2.3	81	83	5	222	39	18	14	27	1.90
64678026--64678080	27	2.0	27	89	6	85	49	0	25	25	1.51
64678888--64678993	54	2.0	54	84	3	142	26	15	34	23	1.94
64681395--64681440	25	1.9	25	82	8	60	28	15	2	54	1.53
64681702--64682050	46	8.0	46	83	10	428	22	24	15	36	1.93
64681883--64682039	38	3.9	38	85	12	215	24	26	17	32	1.96
64681702--64682040	129	2.6	129	85	7	422	22	24	15	36	1.93
64681835--64682050	84	2.6	84	96	0	398	25	25	16	33	1.96
64684177--64684248	31	2.3	32	83	9	87	56	2	1	38	1.22
64684177--64684259	31	2.6	30	78	16	80	54	4	1	39	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64686127--64687095	483	2.0	482	97	0	1848	22	13	25	37	1.91
64692083--64692141	30	2.0	30	82	0	73	25	11	3	59	1.48
64692416--64692457	12	3.4	12	83	6	57	35	4	0	59	1.19
64692485--64692533	22	2.4	22	86	10	68	24	2	2	71	1.07
64704798--64705454	220	3.0	218	93	2	1068	32	17	22	27	1.97
64705428--64705581	44	3.5	44	90	0	245	31	13	29	25	1.94
64705419--64705621	88	2.3	86	77	9	221	30	13	29	26	1.94
64707160--64707201	12	3.4	12	83	6	57	35	4	0	59	1.19
64707163--64707202	13	3.2	13	82	7	55	35	5	0	60	1.19
64707371--64707410	17	2.5	17	84	8	57	35	5	0	60	1.19
64708891--64708943	26	2.0	26	82	7	63	26	15	20	37	1.92
64710424--64710520	32	3.0	32	92	0	158	38	23	7	30	1.82
64716915--64716967	26	2.0	27	89	7	83	26	15	22	35	1.93
64718447--64718511	32	2.0	32	100	0	130	38	24	6	30	1.80
64729902--64729940	17	2.3	17	81	0	51	38	7	7	46	1.61
64730995--64731103	34	3.2	33	78	8	105	26	21	23	28	1.99
64746251--64746433	79	2.3	81	83	7	223	24	27	22	24	2.00
64746230--64746433	40	5.1	40	81	8	229	24	27	22	25	2.00
64754421--64754603	79	2.3	81	83	7	223	24	27	22	24	2.00
64754400--64754603	40	5.1	40	81	8	229	24	27	22	25	2.00
64763049--64763081	17	1.9	17	93	0	57	39	21	12	27	1.88
64763816--64764002	50	3.7	50	82	7	191	28	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64764960--64765019	20	3.0	20	92	0	102	23	23	26	26	2.00
64766037--64766258	81	2.7	81	89	0	336	28	23	6	40	1.80
64766037--64766275	27	8.9	27	88	0	300	29	23	7	40	1.81
64766024--64766301	81	3.4	81	82	2	245	32	21	7	39	1.81
64766253--64766366	54	2.1	53	90	6	176	39	20	7	33	1.79
64766267--64766418	27	5.7	26	82	4	151	42	19	7	30	1.80
64766267--64766418	54	2.8	53	84	4	169	42	19	7	30	1.80
64766253--64766435	81	2.2	80	76	9	181	39	19	8	32	1.82
64766145--64766472	27	12.1	27	78	5	137	35	20	8	35	1.82
64766458--64766612	27	5.7	27	87	3	231	33	19	20	27	1.96
64766610--64766699	44	2.0	44	100	0	180	26	6	23	43	1.78
64767210--64767308	27	3.7	27	83	5	110	20	23	20	36	1.95
64767448--64767526	31	2.5	31	87	0	113	18	20	13	46	1.83
64767476--64767535	6	9.8	6	76	16	61	16	21	16	45	1.86
64767448--64767535	12	7.2	12	75	16	65	19	19	14	46	1.84
64769256--64769297	21	2.1	20	82	8	50	50	19	2	28	1.60
64769955--64770092	43	3.3	42	76	8	136	28	22	16	31	1.96
64773084--64773123	16	2.5	16	95	0	71	42	5	25	27	1.75
64773389--64773518	49	2.7	48	81	10	142	26	30	18	25	1.98
64773727--64773772	19	2.4	19	96	0	83	28	15	4	52	1.61
64777506--64777743	49	4.8	49	81	9	243	24	18	26	30	1.98
64777614--64777691	24	3.3	23	65	28	63	25	17	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64777507--64777743	100	2.4	99	84	4	282	24	18	26	30	1.98
64785863--64786030	46	3.6	46	79	8	162	30	19	26	23	1.98
64788568--64788853	51	5.7	51	81	8	261	29	26	19	24	1.99
64788572--64788853	101	2.8	100	78	8	279	29	26	19	24	1.99
64795016--64795070	19	2.7	20	80	8	58	38	1	5	54	1.34
64810031--64810086	15	3.7	15	88	7	87	14	14	8	62	1.54
64819677--64819831	43	3.6	43	78	8	172	33	23	16	26	1.95
64834649--64834852	27	7.6	27	83	6	189	29	28	15	26	1.96
64834649--64834851	55	3.8	53	81	5	230	29	28	15	26	1.96
64842726--64842930	27	7.6	27	83	5	189	29	28	15	27	1.96
64842726--64842929	54	3.8	53	81	4	230	29	28	15	26	1.96
64848574--64848691	44	2.8	42	76	12	114	33	23	16	27	1.96
64849919--64849952	17	2.1	16	94	5	59	5	0	14	79	0.91
64853015--64853149	55	2.4	56	88	2	200	27	16	22	33	1.95
64859083--64859220	72	1.9	72	93	0	240	28	18	25	26	1.98
64862718--64862881	40	4.2	40	86	5	210	25	21	26	25	2.00
64862718--64862881	79	2.1	78	84	8	208	25	21	26	25	2.00
64870887--64871093	40	5.2	40	91	4	296	25	23	27	24	2.00
64874962--64874996	16	2.2	16	100	0	70	11	14	11	62	1.54
64879755--64879821	33	2.0	33	100	0	134	23	11	26	37	1.90
64887966--64888086	42	2.8	43	75	5	120	27	19	25	28	1.98
64890826--64890909	42	2.0	42	90	0	132	34	10	14	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64892517--64892637	43	2.9	42	77	7	122	26	15	25	32	1.96
64895322--64895499	40	4.5	40	89	4	247	24	24	26	24	2.00
64899610--64899912	40	7.6	40	89	2	396	26	28	20	24	1.99
64907351--64907503	37	4.1	39	80	15	171	25	26	23	24	2.00
64911574--64911874	40	7.6	40	86	3	360	27	28	19	24	1.99
64916600--64916695	27	3.5	28	90	2	133	26	12	29	32	1.93
64916625--64916709	27	3.0	27	87	5	98	29	11	24	34	1.91
64924545--64924642	27	3.5	28	90	2	135	26	13	28	31	1.94
64924573--64924655	27	3.0	27	87	5	96	30	12	25	32	1.92
64924545--64924656	28	4.0	27	83	6	98	28	12	25	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362