Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  279  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94299226--94299288
24
2.6
24
82
7
74
38
19
14
28
1.90
94299277--94299375
23
4.3
23
80
11
105
32
20
21
26
1.97
94303272--94304446
586
2.0
586
98
0
2260
41
21
10
27
1.85
94308938--94309118
96
1.9
96
96
0
335
46
22
9
22
1.80
94314633--94314745
58
1.9
59
92
5
194
27
7
29
36
1.83
94321191--94321367
39
4.6
39
87
1
257
14
23
22
38
1.91
94321191--94321367
77
2.3
78
89
1
266
14
23
22
38
1.91
94332180--94332493
44
6.7
47
74
13
231
21
29
19
29
1.98
94332181--94332493
48
6.7
46
75
10
253
21
29
19
29
1.98
94339683--94339825
67
2.1
68
97
2
272
26
23
18
31
1.97
94339710--94339814
32
3.2
32
64
12
86
26
23
20
29
1.99
94339790--94340104
44
6.8
45
73
16
225
22
29
19
28
1.98
94345710--94345766
29
1.9
30
85
3
80
54
8
3
33
1.48
94345710--94345796
31
2.9
30
80
10
88
52
6
3
36
1.45
94346097--94346128
14
2.3
15
89
10
50
46
0
6
46
1.27
94348131--94348165
11
3.2
11
88
11
54
0
54
0
45
0.99
94348229--94348319
36
2.5
36
94
0
164
23
25
24
27
2.00
94349221--94349300
33
2.3
34
81
12
92
36
5
6
52
1.48
94350153--94350436
137
2.1
137
96
0
523
32
25
17
25
1.97
94350687--94350739
26
2.0
26
82
7
63
26
15
20
37
1.92
94352220--94352329
26
4.2
26
96
0
184
35
24
5
34
1.79
94356038--94356324
137
2.1
137
96
0
520
31
24
19
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94356572--94356624
26
2.0
26
82
7
63
26
15
20
37
1.92
94358097--94358206
26
4.2
26
94
0
166
36
22
5
35
1.78
94370633--94370770
73
1.9
74
86
4
199
31
18
18
31
1.95
94370632--94370795
73
2.2
74
81
6
190
28
17
18
35
1.94
94370815--94370999
73
2.5
73
87
1
255
30
20
22
26
1.98
94370942--94371263
89
3.6
87
78
10
260
26
18
18
36
1.94
94371208--94371522
73
4.2
75
82
8
349
28
15
21
34
1.94
94371208--94371522
149
2.1
148
81
6
361
28
15
21
34
1.94
94371505--94371538
16
2.1
16
88
0
50
20
8
5
64
1.43
94372149--94372196
25
1.9
25
91
0
78
31
31
8
29
1.87
94372945--94372979
11
3.2
11
88
11
54
0
54
0
45
0.99
94373895--94373956
22
2.7
22
72
16
63
32
1
9
56
1.41
94373926--94374001
34
2.2
34
84
9
93
36
5
5
52
1.47
94377864--94377994
46
2.8
46
81
3
165
32
24
20
22
1.98
94380686--94380740
15
4.0
14
76
17
53
29
0
1
69
0.99
94380701--94380757
3
18.7
3
79
16
64
28
0
3
68
1.06
94380852--94380909
24
2.4
24
88
0
80
39
10
3
46
1.55
94380941--94381023
24
3.4
25
73
21
70
32
0
7
60
1.24
94380976--94381022
16
2.8
17
84
12
62
34
0
2
63
1.06
94381226--94381264
18
2.2
18
90
0
60
35
2
0
61
1.10
94381367--94381439
21
3.4
21
73
17
60
31
2
5
60
1.34
94381365--94381438
23
3.3
23
78
16
75
31
2
5
60
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94381675--94381729
25
2.3
24
78
6
58
32
5
3
58
1.38
94381979--94382016
16
2.4
16
82
4
51
34
2
5
57
1.35
94385947--94385991
22
2.0
22
86
0
63
28
22
2
46
1.63
94394186--94394382
75
2.7
73
89
6
317
28
17
20
32
1.96
94394428--94394781
74
4.7
73
85
7
437
30
16
20
32
1.95
94394526--94394822
147
2.0
147
85
3
400
28
18
20
31
1.97
94395215--94395249
9
3.8
9
85
7
52
82
0
2
14
0.77
94395828--94395898
3
23.7
3
74
16
58
29
2
4
63
1.27
94395796--94395899
9
11.3
10
68
20
50
27
3
2
65
1.24
94395813--94395889
12
6.2
12
76
10
75
28
2
2
66
1.18
94395987--94396044
24
2.4
24
88
0
80
39
10
3
46
1.55
94396079--94396162
24
3.5
25
71
21
63
32
1
7
59
1.32
94396114--94396184
16
4.1
17
80
14
74
32
2
1
63
1.18
94396086--94396182
12
7.6
12
70
20
54
31
2
5
60
1.30
94396373--94396401
15
1.9
15
100
0
58
34
0
0
65
0.93
94396651--94396697
23
2.0
25
91
8
80
38
0
6
55
1.26
94396980--94397112
35
3.9
33
71
19
87
37
6
3
53
1.41
94397070--94397110
21
2.0
21
85
9
57
36
0
2
60
1.10
94397066--94397111
24
1.9
24
86
8
67
36
0
2
60
1.09
94403282--94403330
17
2.6
19
78
15
57
28
2
6
63
1.30
94405823--94405897
37
2.0
37
94
0
132
24
14
20
41
1.89
94406128--94406182
23
2.4
23
84
0
74
38
12
20
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94407092--94407334
123
2.0
123
89
1
371
28
22
16
32
1.95
94412254--94412925
206
3.3
206
88
1
945
29
21
18
30
1.97
94421010--94421039
14
2.1
14
93
0
51
46
10
6
36
1.64
94425111--94425165
20
2.9
19
82
17
71
58
0
5
36
1.21
94425119--94425162
16
2.5
16
85
14
52
61
0
4
34
1.16
94425094--94425159
26
2.5
28
76
16
68
56
0
9
34
1.31
94430399--94430534
68
2.0
68
100
0
272
36
11
16
35
1.85
94430849--94431173
90
3.6
89
87
2
465
25
6
14
53
1.65
94430794--94431217
179
2.4
177
81
8
543
25
6
13
54
1.62
94431283--94431332
20
2.5
20
75
21
50
58
0
4
38
1.17
94431313--94431345
16
2.1
16
94
0
57
66
3
6
24
1.28
94433739--94433846
26
4.2
26
89
0
171
32
6
25
36
1.81
94436581--94436614
6
5.7
6
89
0
50
2
29
11
55
1.50
94436611--94436655
5
8.6
5
80
9
54
26
13
0
60
1.34
94436615--94436675
11
5.8
11
76
18
67
29
9
0
60
1.29
94436611--94436675
21
3.1
21
91
6
98
27
10
0
61
1.29
94436616--94436687
21
3.5
20
85
11
92
29
9
0
61
1.28
94436732--94436833
17
5.7
17
70
27
70
31
14
0
53
1.41
94436767--94436833
5
12.4
5
73
14
53
31
16
0
52
1.44
94436756--94436833
27
2.8
28
74
14
90
32
16
0
51
1.45
94436794--94436838
16
2.8
16
81
18
58
31
13
0
55
1.38
94436970--94437015
21
2.2
20
92
7
74
28
4
0
67
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94437237--94437318
12
6.9
11
76
14
74
23
19
0
57
1.41
94437255--94437317
23
2.7
23
87
5
81
22
20
0
57
1.41
94437296--94437351
15
3.6
15
78
4
58
23
16
0
60
1.35
94437324--94437430
22
5.2
20
70
17
67
22
10
1
65
1.33
94437403--94437489
23
3.8
23
85
10
99
27
12
1
58
1.42
94437428--94437476
11
4.2
12
82
10
66
28
12
0
59
1.34
94437407--94437529
29
4.5
29
82
12
127
28
13
0
57
1.41
94437484--94437522
18
2.2
18
85
0
51
28
12
0
58
1.34
94437425--94437525
23
4.0
24
76
18
100
28
11
0
58
1.40
94438119--94438250
65
2.0
65
100
0
264
34
12
15
37
1.84
94440117--94440150
11
3.0
11
95
4
59
44
17
26
11
1.83
94440485--94440660
48
3.7
48
91
0
271
25
18
30
25
1.98
94440485--94440702
96
2.3
96
83
1
267
26
19
28
25
1.98
94440636--94440755
48
2.5
48
79
5
125
29
20
22
28
1.98
94443813--94443893
42
1.9
42
87
0
117
23
16
23
37
1.94
94447077--94447236
69
2.3
70
88
6
225
12
34
4
48
1.61
94451836--94451868
17
1.9
17
93
0
57
39
0
0
60
0.97
94452108--94452146
16
2.4
16
91
0
60
30
28
7
33
1.85
94452855--94452887
16
1.9
17
88
11
50
72
3
12
12
1.23
94464927--94464952
7
3.7
7
100
0
52
15
0
0
84
0.62
94466266--94466320
28
2.0
28
88
0
83
63
3
7
25
1.37
94467666--94467706
20
2.0
20
100
0
82
51
19
14
14
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94467868--94467953
40
2.1
41
82
2
102
32
20
24
22
1.98
94468663--94468753
29
3.2
29
80
9
80
15
1
45
38
1.54
94468683--94468774
14
6.4
14
83
7
105
15
1
50
33
1.51
94468688--94468773
22
3.9
22
87
3
111
15
1
50
33
1.52
94468966--94469021
21
2.7
21
88
0
76
28
0
30
41
1.57
94471319--94471363
14
3.5
14
74
20
53
44
11
4
40
1.60
94471314--94471362
24
2.0
24
92
0
80
44
8
4
42
1.53
94471474--94471536
25
2.5
25
78
0
72
14
36
17
31
1.90
94473371--94473399
14
2.1
14
93
6
51
34
0
10
55
1.34
94473810--94473884
21
3.6
20
75
8
69
34
21
40
4
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362