genome.fa.s8.2.7.7.80.10.50.1000.325.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  325  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108747169--108747228	30	2.0	30	90	6	95	28	0	1	70	0.97
108747759--108747814	29	1.9	29	82	13	71	50	3	7	39	1.47
108748034--108748088	21	2.6	21	82	0	74	41	41	0	16	1.48
108748292--108748343	7	7.4	7	88	0	59	46	26	0	26	1.53
108748602--108748742	40	3.5	40	86	0	192	23	24	19	33	1.97
108748685--108748800	58	2.0	59	84	1	153	24	24	16	35	1.95
108748647--108748839	99	2.0	98	81	3	226	23	23	18	34	1.96
108749207--108749306	52	2.0	50	86	4	137	29	31	26	14	1.94
108752452--108752536	43	2.0	43	86	9	120	25	28	16	29	1.97
108752434--108753111	177	3.8	178	83	5	822	27	22	18	31	1.97
108752354--108753152	354	2.3	353	84	4	1024	27	23	18	30	1.97
108754252--108754375	66	1.9	65	81	9	153	12	22	14	50	1.75
108762280--108762317	19	2.0	19	100	0	76	15	26	5	52	1.64
108766677--108766719	21	2.0	21	90	0	68	44	30	2	23	1.66
108770531--108770569	20	2.0	20	85	10	53	61	2	0	35	1.10
108770502--108770603	29	3.5	29	85	7	118	63	1	1	32	1.16
108770568--108770601	11	3.2	11	87	8	52	76	0	5	17	0.98
108770568--108770773	10	21.3	10	67	16	78	63	0	5	29	1.24
108770587--108770773	19	9.8	20	71	11	124	62	1	5	31	1.24
108770649--108770744	29	3.5	28	76	10	81	64	1	6	28	1.24
108770903--108770995	45	2.1	45	95	0	168	35	11	18	34	1.87
108771003--108771052	19	2.5	20	77	3	57	22	4	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108770992--108771045	28	1.9	28	88	7	83	20	3	3	72	1.16
108771049--108771100	26	2.0	26	81	11	61	36	0	0	63	0.95
108771218--108771393	90	1.9	90	81	3	210	35	9	17	36	1.83
108775562--108775613	20	2.6	20	87	0	77	36	25	9	28	1.87
108778003--108778046	20	2.2	20	100	0	88	18	25	0	56	1.41
108780175--108780323	43	3.5	42	80	6	156	26	16	25	31	1.97
108780440--108780498	24	2.4	25	81	15	63	37	5	22	35	1.76
108783923--108783955	13	2.6	13	90	4	50	39	0	12	48	1.40
108787262--108787304	22	1.9	23	85	4	61	34	11	37	16	1.85
108789296--108789369	6	12.2	6	78	8	60	16	6	1	75	1.08
108792275--108792307	13	2.6	13	90	4	50	39	0	12	48	1.40
108805732--108805786	22	2.5	22	94	2	94	45	0	9	45	1.35
108827652--108827679	14	2.0	14	100	0	56	57	7	7	28	1.52
108832290--108832572	41	6.9	40	88	2	235	31	21	25	21	1.98
108832347--108832571	82	2.8	82	88	0	344	29	22	26	21	1.99
108832594--108832685	47	1.9	47	82	2	112	53	26	2	18	1.56
108833284--108833326	21	2.0	21	86	0	59	20	2	32	44	1.65
108833735--108833783	7	6.9	7	90	4	80	83	0	0	16	0.64
108833735--108833792	15	4.0	14	93	2	80	79	1	0	18	0.82
108833710--108833796	8	10.9	8	77	11	54	72	2	0	25	0.96
108836961--108836985	4	6.2	4	100	0	50	24	0	0	76	0.80
108837390--108837435	21	2.2	21	84	0	56	45	2	21	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108841890--108841929	21	1.9	21	85	10	55	30	27	17	25	1.97
108845957--108845981	13	1.9	13	100	0	50	16	28	40	16	1.89
108852453--108852622	46	3.7	46	72	13	150	22	16	28	32	1.95
108856714--108856792	39	2.0	39	92	0	131	40	11	13	34	1.81
108856780--108856827	24	2.0	24	95	0	87	41	10	16	31	1.82
108859808--108859930	39	3.2	39	94	0	210	34	27	17	19	1.95
108859903--108859956	26	2.1	26	96	0	99	31	22	20	25	1.98
108863780--108863824	11	3.8	11	78	16	54	44	4	0	51	1.21
108863774--108863824	25	2.0	25	92	0	84	43	7	0	49	1.32
108865145--108865180	3	12.0	3	100	0	72	0	0	33	66	0.92
108866284--108866390	24	4.5	24	82	2	90	13	19	41	26	1.88
108866314--108866418	12	8.8	12	82	0	93	14	20	40	24	1.90
108866281--108866418	48	2.9	48	82	0	141	13	21	40	24	1.89
108869163--108869219	28	2.0	28	100	0	114	31	10	0	57	1.32
108881976--108882017	21	2.0	21	81	9	50	7	19	54	19	1.66
108883861--108883933	30	2.5	28	79	16	87	56	1	6	35	1.35
108898672--108898746	22	3.4	22	72	13	57	68	2	1	28	1.12
108898684--108898784	37	2.7	37	80	11	116	69	2	0	26	1.09
108898673--108898792	46	2.5	48	80	10	122	67	2	1	28	1.13
108898730--108898810	10	8.1	10	71	22	55	60	1	1	37	1.13
108898722--108898781	19	3.2	18	73	17	52	70	1	1	26	1.07
108898718--108898782	20	3.4	19	77	10	69	70	1	1	26	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108898695--108898786	9	10.2	9	70	20	50	68	3	1	27	1.12
108899251--108899327	30	2.5	31	81	6	86	42	9	15	32	1.78
108899859--108900118	126	2.1	124	86	2	360	41	13	17	27	1.87
108900383--108900439	25	2.3	23	80	14	60	63	1	1	33	1.15
108900929--108900990	28	2.2	28	82	0	70	33	14	17	33	1.90
108901460--108901507	25	2.0	24	84	12	62	72	2	6	18	1.15
108901460--108901510	24	2.1	23	82	13	59	74	1	5	17	1.11
108908430--108908492	24	2.6	25	82	7	76	74	6	6	12	1.20
108910292--108910321	13	2.2	14	94	5	53	43	6	50	0	1.28
108920230--108920323	46	2.0	46	100	0	188	32	21	12	32	1.91
108921157--108921216	21	2.9	21	79	0	75	43	18	3	35	1.67
108922750--108922966	117	1.8	118	81	6	271	48	4	10	36	1.57
108924357--108924466	26	4.2	26	91	2	168	34	4	23	37	1.75
108926075--108926212	26	5.2	27	83	9	178	18	23	23	34	1.96
108926075--108926212	51	2.6	52	87	7	190	18	23	23	34	1.96
108930186--108930295	26	4.2	26	94	2	177	34	4	24	36	1.76
108931913--108932057	54	2.7	54	91	3	229	19	24	22	33	1.97
108931916--108932074	27	5.9	27	80	12	166	20	24	20	33	1.97
108931917--108932074	81	2.0	81	83	7	205	20	24	20	34	1.97
108933809--108933900	45	2.1	44	80	13	100	30	27	13	29	1.94
108933827--108933935	44	2.4	45	83	10	127	30	25	16	27	1.97
108933836--108934156	177	1.8	177	88	2	493	30	22	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108934272--108934296	13	1.9	13	100	0	50	32	8	24	36	1.84
108937807--108938375	176	3.2	176	94	0	949	26	24	18	30	1.98
108938567--108938778	45	4.7	45	80	9	184	29	22	17	31	1.96
108938845--108938972	64	2.0	64	92	0	211	38	14	15	31	1.88
108940070--108940101	17	1.9	16	100	0	55	9	0	0	90	0.45
108940070--108940101	6	5.7	6	89	10	50	9	0	0	90	0.45
108940070--108940103	11	3.2	11	91	4	52	8	0	0	91	0.43
108967115--108967671	138	4.0	138	89	0	819	45	5	8	40	1.58
108967647--108967866	78	2.8	78	91	2	334	32	12	7	47	1.70
108968720--108968749	13	2.3	13	94	0	51	90	0	6	3	0.56
108970741--108971104	48	7.6	48	76	10	289	30	19	27	22	1.98
108970776--108971011	96	2.5	96	93	1	393	30	19	27	22	1.98
108970742--108971104	144	2.5	143	81	4	390	30	19	27	22	1.98
108970776--108971057	96	2.9	95	88	4	363	30	18	28	23	1.97
108971394--108971443	26	1.9	26	100	0	100	28	2	16	54	1.53
108973421--108973521	51	2.0	51	100	0	202	28	7	21	41	1.81
108978130--108978191	30	2.1	30	96	0	115	22	3	14	59	1.49
108981352--108981411	20	3.1	19	86	9	84	30	0	3	66	1.07
108981360--108981404	11	4.3	11	78	18	51	28	0	2	68	1.01
108981333--108981411	8	8.7	9	78	19	76	32	0	2	64	1.07
108981936--108981986	22	2.3	22	75	0	57	19	11	9	58	1.60
108982233--108982291	24	2.4	25	77	8	77	18	0	27	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108982360--108982425	23	2.7	23	72	9	60	18	0	28	53	1.45
108982361--108982394	16	2.1	17	88	5	52	14	0	29	55	1.40
108982260--108982651	155	2.5	156	89	2	596	32	1	20	45	1.60
108983794--108983823	9	3.4	9	90	9	53	63	0	0	36	0.95
108984374--108984416	18	2.4	18	88	0	59	44	9	27	18	1.80
108985033--108985064	7	4.6	7	92	0	55	62	9	0	28	1.26
108986211--108986255	21	2.1	21	84	8	56	51	6	11	31	1.63
108986439--108986486	24	2.0	24	100	0	96	16	16	41	25	1.89
108991286--108991378	40	2.3	40	90	1	141	37	8	11	41	1.73
108991504--108991537	11	3.0	11	91	8	59	38	0	0	61	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362