genome.fa.s8.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  288  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96926168--96926247	10	8.0	10	74	19	51	63	1	1	33	1.10
96926181--96926226	22	2.1	22	84	8	58	67	2	0	30	1.03
96926835--96926888	23	2.3	23	90	0	90	37	0	14	48	1.45
96926844--96926886	13	3.5	13	81	18	65	34	0	16	48	1.46
96936253--96936380	57	2.3	56	86	1	166	30	16	24	28	1.96
96936277--96936380	28	3.7	28	74	3	93	31	18	23	26	1.97
96944139--96944207	16	4.2	16	94	3	120	39	37	0	23	1.55
96944139--96944207	33	2.1	32	94	2	120	39	37	0	23	1.55
96944416--96944458	20	2.2	20	86	0	59	44	0	4	51	1.22
96957504--96957548	8	5.4	8	82	10	54	37	0	0	62	0.96
96957505--96957548	13	3.4	13	78	12	54	38	0	0	61	0.96
96957503--96957550	18	2.8	17	84	9	62	37	0	0	62	0.95
96959885--96960063	51	3.5	51	88	6	240	28	13	29	27	1.95
96964764--96964847	43	1.9	44	85	2	116	45	9	9	35	1.69
96971201--96971347	42	3.3	42	73	18	111	30	25	12	30	1.93
96971254--96971359	49	2.2	48	89	3	158	32	26	12	29	1.92
96971459--96971607	31	4.8	31	88	0	226	24	26	20	27	1.99
96971583--96971759	50	3.5	50	92	0	300	25	23	15	35	1.94
96976741--96976781	20	2.0	20	90	0	64	26	0	24	48	1.51
96977474--96977499	11	2.4	11	100	0	52	34	26	7	30	1.85
96980253--96980309	18	3.3	16	82	9	60	19	10	1	68	1.28
96986643--96986709	12	5.5	12	72	19	50	65	1	2	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96986790--96986860	28	2.5	28	79	6	72	57	2	5	33	1.37
96988789--96989471	205	3.3	206	90	0	1035	27	21	18	32	1.97
96997514--96997563	15	3.5	15	82	15	61	42	12	24	22	1.87
96997584--96997613	14	2.1	14	93	0	51	46	10	6	36	1.64
97001542--97001617	32	2.4	32	82	6	91	60	2	1	35	1.19
97001557--97001638	17	4.9	17	75	19	66	62	1	4	31	1.24
97001666--97001728	27	2.2	28	81	10	67	68	0	0	31	0.90
97006669--97006707	20	2.0	20	90	10	62	51	10	0	38	1.36
97007210--97007247	19	2.0	19	90	10	60	21	10	0	68	1.19
97007227--97007254	13	2.2	13	100	0	56	21	14	0	64	1.29
97011213--97011278	31	2.3	29	76	18	77	28	0	7	63	1.21
97011344--97011392	22	2.3	21	82	10	64	20	4	2	73	1.10
97011408--97011438	2	15.5	2	100	0	62	48	0	0	51	1.00
97015206--97015261	23	2.4	23	81	0	76	21	33	25	19	1.97
97021593--97021660	25	2.7	25	81	2	82	17	26	14	41	1.88
97022968--97023243	139	2.0	139	96	0	507	26	17	24	31	1.97
97028034--97028116	40	2.1	40	97	0	157	42	10	8	38	1.70
97028026--97028124	40	2.7	36	82	13	137	42	13	7	37	1.71
97048311--97048338	14	2.0	14	100	0	56	14	35	21	28	1.92
97050659--97051046	69	5.7	69	80	1	404	20	21	21	36	1.96
97050680--97051046	136	2.7	135	84	4	457	20	21	21	36	1.96
97050659--97051045	205	1.9	206	83	1	508	20	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97054556--97054660	43	2.4	43	93	3	176	32	15	20	32	1.93
97059137--97059184	18	2.6	18	83	12	53	33	10	2	54	1.46
97069459--97069523	23	2.9	23	75	6	80	40	21	20	18	1.92
97069894--97069951	15	3.8	15	81	2	71	50	15	0	34	1.45
97071221--97071267	5	9.2	5	97	2	85	57	0	0	42	0.98
97071290--97071318	8	3.6	8	100	0	58	62	0	0	37	0.96
97072916--97072964	25	2.0	25	87	0	71	38	6	18	36	1.76
97080412--97080468	15	3.8	15	83	0	78	47	14	38	0	1.44
97080405--97080484	18	4.7	18	71	21	57	45	15	40	0	1.46
97080411--97080569	33	4.8	33	82	4	153	50	14	34	0	1.43
97080474--97080572	18	5.7	18	78	7	96	55	13	31	0	1.38
97080410--97080563	51	3.1	50	85	8	181	50	14	34	0	1.44
97085629--97085685	17	3.2	17	70	18	53	14	49	15	21	1.80
97085629--97085712	36	2.3	36	85	0	114	14	46	14	25	1.82
97087269--97087450	46	4.0	46	86	2	233	22	23	13	40	1.89
97087829--97087955	23	5.4	23	67	15	62	36	23	23	16	1.94
97087842--97087957	23	5.0	23	70	19	87	33	23	25	17	1.96
97091581--97091637	29	2.0	29	89	0	87	17	33	7	42	1.76
97091727--97091820	48	2.0	48	82	0	116	28	18	12	40	1.87
97092091--97092164	23	3.3	23	78	1	60	29	16	10	43	1.82
97092197--97092244	23	2.1	23	88	0	69	18	14	18	47	1.82
97092603--97092636	16	2.1	17	88	5	52	23	35	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97095819--97095877	27	2.2	27	85	11	77	45	0	5	49	1.24
97102562--97102600	19	2.0	21	90	10	64	61	2	0	35	1.10
97104643--97104675	17	1.9	17	93	0	57	39	21	18	21	1.93
97111235--97111282	9	5.2	9	80	10	53	58	2	0	39	1.10
97111666--97111707	21	2.0	21	81	9	50	47	2	0	50	1.14
97119775--97119805	6	5.0	6	96	4	53	48	0	35	16	1.46
97123040--97123262	40	5.6	40	91	1	349	26	27	22	22	1.99
97125626--97125711	3	29.0	3	80	6	95	67	1	29	2	1.10
97126816--97126863	21	2.3	21	85	0	60	10	22	31	35	1.88
97127525--97127701	43	4.2	43	90	2	263	43	20	8	27	1.81
97127525--97127701	83	2.1	84	89	4	268	43	20	8	27	1.81
97127529--97127701	85	2.1	83	89	4	258	43	20	8	26	1.81
97129344--97129387	15	3.1	13	79	20	52	36	36	11	15	1.84
97129682--97129784	46	2.2	46	94	0	188	48	10	9	31	1.70
97129728--97130264	62	8.6	62	92	2	772	47	13	12	26	1.77
97130100--97130204	32	3.2	34	65	20	87	47	12	14	25	1.79
97130210--97130246	16	2.3	16	90	0	56	51	21	13	13	1.75
97130429--97130468	12	3.3	12	82	0	53	55	17	2	25	1.55
97130533--97130585	24	2.2	24	79	0	61	56	9	13	20	1.64
97131824--97131886	32	2.0	32	87	3	92	30	1	1	66	1.10
97131829--97131899	32	2.3	30	80	9	81	30	0	1	67	0.99
97131830--97131899	31	2.3	30	79	13	79	30	0	1	68	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97133835--97133951	59	2.0	59	91	3	191	34	4	6	54	1.46
97136838--97136880	23	1.9	22	95	4	77	48	11	0	39	1.40
97136839--97136890	23	2.3	22	84	12	70	50	11	0	38	1.39
97142027--97142096	29	2.4	29	80	2	79	31	15	7	45	1.73
97149685--97149784	43	2.3	44	84	5	132	32	17	21	30	1.95
97150107--97150157	21	2.4	21	86	0	66	0	39	21	39	1.54
97151616--97151670	27	2.0	27	82	7	65	65	14	5	14	1.44
97161285--97161315	12	2.6	12	89	0	53	9	45	19	25	1.81
97162876--97162913	18	2.2	18	85	4	51	15	44	26	13	1.83
97164124--97164170	3	15.7	3	95	0	85	70	0	29	0	0.88
97172970--97172997	5	5.6	5	100	0	56	82	0	0	17	0.68
97176276--97176329	22	2.3	24	78	9	58	33	1	9	55	1.42
97182647--97182701	9	6.1	9	76	14	51	23	32	0	43	1.54
97182643--97182699	18	3.2	18	78	14	64	26	35	0	38	1.57
97185462--97185696	131	1.8	131	84	3	323	36	15	13	34	1.86
97190316--97190365	17	2.9	17	82	14	66	82	6	6	6	0.97
97190326--97190433	26	3.8	26	73	21	85	79	3	12	3	1.00
97190338--97190458	33	3.8	31	71	22	101	78	4	13	4	1.04
97190366--97190467	14	7.8	13	77	20	58	77	3	15	2	1.04
97190344--97190467	20	6.4	19	72	24	66	79	3	13	4	1.01
97190336--97190433	7	14.6	7	81	7	71	79	4	13	3	0.99
97190334--97190464	12	10.2	12	73	14	79	79	3	12	3	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97190895--97191018	65	1.9	65	88	0	185	19	20	11	48	1.79
97191588--97191977	143	2.7	143	79	3	412	30	18	21	28	1.97
97192117--97192350	129	1.8	131	83	6	316	35	16	13	35	1.88
97194380--97194442	25	2.6	23	74	16	65	23	23	22	30	1.99
97197306--97197449	54	2.7	54	92	2	236	18	24	22	34	1.96
97197309--97197467	27	5.9	27	80	11	175	19	24	21	34	1.96
97197309--97197467	81	2.0	80	83	10	200	19	24	21	34	1.96
97204354--97204491	27	5.1	27	81	11	167	18	23	22	34	1.96
97204348--97204494	54	2.7	54	92	2	233	19	24	21	34	1.96
97204361--97204508	27	5.5	27	80	12	153	20	25	19	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362