Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  328  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109530395--109531155
203
3.7
202
89
3
1089
29
18
22
29
1.97
109531214--109531628
133
3.1
133
91
0
654
32
17
23
26
1.96
109531214--109531628
44
9.4
44
71
10
274
32
17
23
26
1.96
109532737--109532858
38
3.4
37
75
12
119
47
2
17
32
1.61
109532733--109532833
38
2.6
38
80
9
123
50
2
13
32
1.57
109533547--109533585
17
2.2
17
86
13
53
33
5
7
53
1.51
109555406--109555638
48
4.9
48
74
4
191
24
27
20
27
1.99
109557117--109557230
54
2.1
54
85
0
156
21
25
27
26
1.99
109562407--109562517
56
2.0
56
98
0
213
54
12
7
26
1.64
109568202--109568242
21
2.0
21
90
0
64
19
29
21
29
1.98
109570081--109570118
14
2.7
14
95
0
67
34
15
0
50
1.45
109574069--109574110
22
2.0
22
90
4
68
40
2
0
57
1.12
109576574--109576749
46
3.8
46
80
7
221
22
22
27
28
1.99
109576570--109576741
93
1.8
93
94
0
308
22
22
27
27
1.99
109581100--109581129
6
5.0
6
95
0
51
30
0
36
33
1.58
109582058--109582125
21
3.0
22
72
16
66
66
4
14
14
1.41
109592937--109593013
39
2.0
39
94
0
136
64
19
5
10
1.43
109593134--109593182
19
2.6
19
83
0
62
55
20
10
14
1.68
109598572--109598748
50
3.5
50
89
0
255
35
14
23
27
1.93
109598724--109598903
31
5.8
31
87
0
243
29
18
25
26
1.98
109598925--109599094
47
3.6
48
84
6
186
28
14
27
30
1.95
109600506--109600538
17
2.0
16
94
5
57
63
0
0
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109601278--109601317
21
1.9
21
94
0
71
52
2
17
27
1.57
109605676--109605850
46
3.8
45
78
10
185
21
21
29
28
1.98
109612756--109612931
46
3.8
46
78
12
198
21
21
28
28
1.98
109612753--109612924
93
1.8
93
93
0
299
21
22
29
27
1.99
109615399--109615453
26
2.1
26
100
0
110
41
20
7
30
1.79
109619047--109619109
23
2.8
22
73
22
67
57
6
0
36
1.24
109619701--109619785
21
3.9
21
75
11
89
45
24
2
27
1.65
109619949--109620126
41
4.4
41
89
0
268
17
22
23
35
1.95
109619949--109620167
82
2.7
82
85
3
255
17
21
22
38
1.93
109619949--109620197
123
2.0
123
82
6
299
18
20
22
38
1.93
109623350--109623383
14
2.4
14
90
9
52
41
5
20
32
1.76
109626355--109626406
26
2.0
26
100
0
104
30
34
23
11
1.90
109626323--109626691
104
3.6
102
92
3
587
30
30
19
19
1.97
109626562--109626613
26
2.0
26
96
0
95
28
34
23
13
1.92
109627017--109627080
30
2.2
29
81
10
76
29
28
6
35
1.82
109627024--109627080
30
1.9
30
85
3
80
29
24
7
38
1.82
109631492--109631537
20
2.4
19
85
7
58
71
2
23
2
1.08
109631474--109631585
57
2.0
57
84
7
147
61
1
30
6
1.31
109631553--109631591
20
1.9
21
89
5
62
66
0
28
5
1.12
109632249--109632313
32
2.0
32
100
0
130
24
9
6
60
1.50
109640330--109640375
19
2.3
20
96
3
85
52
17
10
19
1.74
109640574--109640630
25
2.3
26
78
9
64
33
3
3
59
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109641428--109641508
22
4.3
19
75
12
62
30
1
3
64
1.19
109652596--109652630
18
1.9
18
88
0
52
34
14
14
37
1.86
109653668--109653721
20
2.6
20
82
5
63
22
25
31
20
1.98
109659044--109659251
104
2.0
104
100
0
416
41
13
13
31
1.83
109661526--109661566
6
7.0
6
94
5
75
34
17
48
0
1.47
109662696--109662722
6
4.5
6
100
0
54
0
0
14
85
0.61
109662895--109662949
20
2.7
21
85
5
76
30
3
0
65
1.10
109675658--109675735
29
2.7
28
80
6
84
42
3
10
43
1.56
109677370--109677410
21
1.9
22
85
5
57
24
7
7
60
1.48
109677660--109677706
24
2.0
24
95
0
85
36
4
14
44
1.65
109680613--109680695
43
2.0
42
88
7
123
28
26
19
25
1.98
109680627--109680726
42
2.3
44
81
6
116
34
26
14
26
1.94
109693171--109693218
24
2.0
24
83
0
60
10
10
25
54
1.66
109696304--109696352
17
2.8
18
74
17
50
36
0
16
46
1.47
109698713--109698741
14
2.1
14
100
0
58
48
13
0
37
1.43
109701745--109701787
22
2.0
22
90
0
68
0
16
4
79
0.90
109701743--109701787
12
3.9
12
82
11
58
0
17
4
77
0.92
109702504--109702585
22
3.8
22
74
9
96
12
32
30
24
1.92
109702481--109702622
43
3.3
43
81
0
158
17
36
23
21
1.95
109704947--109704976
13
2.3
13
94
0
51
53
6
0
40
1.27
109708191--109708215
13
1.9
13
100
0
50
32
4
24
40
1.73
109709310--109709437
43
3.0
42
79
8
141
23
14
28
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109709788--109709908
64
1.9
65
98
1
235
15
13
24
46
1.82
109714835--109714883
24
2.0
25
88
4
73
20
20
18
40
1.91
109715319--109715388
35
2.0
35
100
0
140
54
0
14
31
1.40
109716836--109716866
16
1.9
16
93
0
53
29
3
0
67
1.06
109717062--109717113
27
1.9
27
88
7
79
32
3
1
61
1.25
109718473--109718527
28
2.0
27
89
6
85
25
9
29
36
1.87
109722767--109722907
39
3.6
38
94
2
228
49
2
16
31
1.60
109727375--109727404
14
2.2
14
94
5
53
53
0
40
6
1.27
109744718--109744763
1
46.0
1
91
0
74
0
2
95
2
0.30
109745680--109745805
38
3.3
38
88
2
191
50
2
16
30
1.58
109757072--109757111
20
2.1
19
85
4
53
32
7
12
47
1.69
109758130--109758192
25
2.6
25
80
12
76
30
23
28
17
1.97
109758152--109758233
25
3.3
25
73
10
69
37
21
23
17
1.93
109760551--109760590
21
2.0
20
90
5
62
45
22
0
32
1.53
109761685--109761726
21
2.0
21
85
0
57
38
19
2
40
1.64
109763036--109763074
17
2.3
18
82
13
55
41
0
0
58
0.98
109766518--109766548
2
15.5
2
93
0
53
48
0
0
51
1.00
109770769--109770800
9
3.6
9
100
0
64
78
9
0
12
0.97
109773758--109773930
86
2.0
87
98
1
339
25
19
26
28
1.98
109775255--109775285
9
3.4
9
100
0
62
77
9
0
12
0.99
109780409--109780580
93
1.8
93
96
0
317
27
29
21
20
1.98
109780402--109780577
46
3.8
46
79
12
216
28
29
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109787942--109788113
93
1.8
93
94
0
308
27
29
21
21
1.99
109787935--109788110
46
3.8
46
79
12
207
28
28
21
21
1.98
109787984--109788122
47
3.0
46
75
16
144
29
28
19
22
1.98
109790409--109790441
6
5.5
6
100
0
66
0
15
0
84
0.61
109797889--109797931
22
2.0
22
86
9
61
23
2
6
67
1.27
109806514--109806576
31
2.1
30
90
3
99
14
4
3
77
1.05
109806514--109806576
6
10.3
6
86
3
81
14
4
3
77
1.05
109808755--109808797
17
2.5
17
88
0
68
44
0
11
44
1.40
109810896--109810935
8
4.6
8
85
14
53
40
0
0
60
0.97
109812179--109812235
15
3.9
15
88
2
89
35
0
12
52
1.39
109812620--109812672
21
2.4
22
84
9
72
15
22
26
35
1.93
109812637--109812694
21
2.8
21
83
0
71
13
22
25
37
1.91
109812856--109812900
18
2.4
19
78
14
58
53
0
13
33
1.40
109817234--109817273
8
4.6
8
85
14
53
40
0
0
60
0.97
109818041--109818076
17
2.2
17
90
5
56
55
0
0
44
0.99
109830052--109830172
6
20.0
6
72
21
58
20
4
0
74
1.00
109830086--109830183
8
11.6
8
71
20
58
20
2
0
77
0.87
109830089--109830175
11
7.8
12
76
17
66
20
2
0
77
0.89
109830134--109830172
14
2.9
14
88
7
55
17
5
0
76
0.96
109830075--109830182
15
7.1
15
69
24
59
20
2
0
76
0.90
109830076--109830148
8
9.1
8
71
16
53
21
1
0
76
0.86
109830086--109830182
29
3.4
31
73
12
73
19
2
0
78
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109830086--109830181
20
4.6
21
81
15
101
19
2
0
78
0.86
109830229--109830254
3
8.7
3
100
0
52
30
0
0
69
0.89
109831257--109831286
11
2.7
11
89
0
51
83
0
10
6
0.81
109834495--109834657
43
3.8
43
83
9
181
31
24
17
25
1.97
109834495--109834654
86
1.9
85
84
8
218
31
25
18
25
1.97
109835892--109835937
12
4.0
12
88
5
60
4
21
0
73
1.00
109846457--109846504
24
2.0
25
87
4
71
25
4
0
70
1.04
109848465--109848654
61
3.1
61
88
1
256
25
31
21
22
1.98
109871273--109871334
27
2.5
24
85
14
97
22
17
4
54
1.61
109876281--109876388
26
4.2
26
90
0
171
32
5
24
37
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362