Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  312  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104237820--104237946
50
2.5
50
88
3
175
24
22
16
36
1.94
104243712--104243751
17
2.3
18
91
4
64
37
2
0
60
1.11
104244204--104244304
45
2.2
46
82
8
125
49
2
4
42
1.39
104252642--104252686
20
2.1
21
84
8
56
57
4
0
37
1.19
104256725--104256778
23
2.3
23
78
12
58
55
9
3
31
1.49
104258846--104258876
12
2.5
12
94
5
53
83
0
9
6
0.79
104262480--104262537
16
3.5
16
80
13
64
46
0
1
51
1.11
104262488--104262549
18
3.4
19
80
14
60
40
0
3
56
1.15
104262507--104262548
18
2.2
20
87
8
61
38
0
4
57
1.20
104262770--104262803
3
11.3
3
93
0
59
29
0
2
67
1.05
104265243--104265275
17
1.9
17
93
0
57
3
12
0
84
0.72
104266788--104266861
30
2.4
32
81
6
89
44
0
1
54
1.08
104267828--104267853
11
2.4
11
100
0
52
7
38
7
46
1.61
104270864--104270905
15
2.7
16
82
14
52
45
0
2
52
1.13
104270855--104270896
15
2.9
15
82
10
52
47
0
0
52
1.00
104271002--104271036
18
2.0
17
88
5
52
45
0
0
54
0.99
104270839--104271149
151
2.0
154
91
3
511
47
4
2
45
1.38
104274687--104274711
10
2.5
10
100
0
50
84
0
8
8
0.79
104277805--104278002
97
2.0
98
84
2
256
21
20
12
45
1.83
104282829--104282858
14
2.1
15
93
6
53
56
0
0
43
0.99
104283800--104283829
14
2.1
14
93
0
51
70
0
0
30
0.88
104285335--104285374
9
4.4
9
80
0
53
27
2
0
70
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104288687--104288806
51
2.4
51
91
2
197
32
15
24
28
1.95
104288782--104288807
7
3.7
7
100
0
52
42
11
30
15
1.82
104294998--104295083
37
2.3
35
79
13
93
29
2
3
65
1.22
104295596--104295642
22
2.1
22
88
0
76
61
6
0
31
1.21
104305160--104305189
11
2.7
11
94
0
51
30
46
3
20
1.66
104305316--104305402
39
2.2
39
95
0
156
41
26
9
22
1.84
104307364--104307444
29
2.8
28
80
12
92
30
2
3
62
1.25
104308304--104308343
18
2.3
19
87
12
59
62
0
0
37
0.95
104313710--104313745
18
1.9
19
88
5
56
63
2
2
30
1.22
104313740--104313803
24
2.6
26
78
7
71
59
3
0
37
1.13
104321618--104321661
21
2.1
21
100
0
88
36
0
27
36
1.57
104324251--104324286
13
2.8
14
84
16
51
27
25
0
47
1.52
104324238--104324278
18
2.2
19
87
12
59
29
24
0
46
1.53
104324401--104324535
39
3.4
38
73
8
101
28
28
18
24
1.98
104324775--104324813
18
2.1
19
90
4
62
48
10
0
41
1.37
104326122--104326178
5
11.0
5
78
14
62
56
1
0
42
1.10
104326121--104326176
12
4.5
12
81
16
69
55
1
0
42
1.10
104326123--104326178
26
2.2
26
90
6
69
55
1
0
42
1.10
104330984--104331017
17
1.9
18
94
5
61
14
26
41
17
1.88
104334234--104334287
19
2.6
21
77
17
58
31
1
11
55
1.45
104342135--104342197
23
2.8
22
85
4
72
28
22
30
19
1.98
104344211--104344239
12
2.5
12
94
5
51
58
6
20
13
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104355498--104355534
17
2.2
17
90
0
56
40
16
21
21
1.91
104361886--104361920
12
2.9
12
100
0
70
14
42
17
25
1.86
104367013--104367057
19
2.3
20
96
3
83
28
11
11
48
1.73
104367134--104367176
18
2.4
18
96
0
77
46
2
0
51
1.13
104374424--104374474
24
2.1
24
92
0
84
39
37
3
19
1.70
104374481--104374534
26
2.1
26
96
0
99
35
9
12
42
1.75
104376949--104377002
26
2.1
26
96
0
99
35
12
12
38
1.82
104393819--104393861
16
2.5
18
77
14
54
60
4
0
34
1.17
104397917--104397960
21
2.1
21
82
0
52
34
25
2
38
1.68
104398117--104398226
53
2.1
53
94
0
193
33
2
2
60
1.25
104403222--104403718
126
4.0
126
80
3
533
29
16
15
38
1.90
104403781--104403853
30
2.5
30
80
10
89
39
20
1
38
1.61
104403776--104403853
28
2.7
28
78
9
86
39
20
2
37
1.66
104403884--104403928
18
2.6
18
92
3
74
46
17
0
35
1.49
104403890--104403964
27
2.8
28
71
17
77
46
14
0
38
1.45
104404782--104404807
12
2.2
12
100
0
52
61
7
15
15
1.55
104405122--104405152
16
1.9
16
93
0
53
70
0
9
19
1.14
104405259--104405316
13
4.7
12
83
12
73
72
10
1
15
1.19
104405258--104405315
25
2.3
23
88
11
80
74
10
1
13
1.15
104406625--104406680
22
2.6
21
72
8
58
17
3
33
44
1.66
104407680--104407724
23
1.9
24
90
4
74
37
0
2
60
1.09
104415792--104415837
3
15.3
3
100
0
92
0
32
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104417303--104417358
25
2.2
25
87
0
76
55
8
3
32
1.48
104417313--104417364
25
2.2
25
86
6
72
55
9
1
32
1.43
104420622--104420665
23
1.9
23
90
0
70
56
11
0
31
1.35
104421757--104421796
20
2.0
20
95
0
71
12
30
20
37
1.89
104429597--104429621
2
12.5
2
100
0
50
52
0
0
48
1.00
104431920--104431986
31
2.2
30
89
5
100
41
2
1
53
1.25
104433096--104433135
3
13.3
3
94
0
71
67
2
0
30
1.04
104443430--104443515
27
3.1
27
80
9
95
41
1
3
53
1.25
104444525--104444554
14
2.1
14
93
0
51
13
23
6
56
1.60
104445045--104445072
12
2.3
12
100
0
56
78
7
14
0
0.95
104445028--104445077
18
2.9
17
82
8
57
82
8
10
0
0.86
104447335--104447359
6
4.2
6
100
0
50
68
0
0
32
0.90
104447588--104447642
14
3.9
14
80
2
65
40
1
20
38
1.63
104456208--104456243
18
2.0
18
94
0
63
22
0
36
41
1.54
104461479--104461537
29
2.0
29
100
0
118
42
0
10
47
1.37
104463123--104463187
21
3.1
21
86
0
85
35
26
23
15
1.94
104470893--104470975
21
3.9
21
77
3
67
37
25
21
15
1.93
104470891--104470965
21
3.5
22
81
7
82
38
25
21
14
1.91
104473292--104473329
20
1.9
20
89
10
60
47
13
15
23
1.81
104474025--104474065
22
2.0
20
85
9
55
39
14
9
36
1.79
104475848--104475888
12
3.4
12
93
0
55
65
9
2
21
1.34
104475858--104475900
3
14.0
3
85
4
59
65
4
2
27
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104475824--104475900
18
4.2
18
74
11
68
63
5
5
25
1.36
104475923--104475978
4
13.8
4
74
10
51
71
1
5
21
1.15
104475932--104475988
25
2.2
26
84
3
80
71
3
3
21
1.15
104476081--104476148
3
22.7
3
100
0
136
33
0
32
33
1.58
104478444--104478528
10
7.9
10
69
19
55
4
22
1
71
1.11
104478500--104478537
20
1.9
20
89
10
60
10
15
0
73
1.09
104487401--104487430
14
2.1
14
100
0
60
10
26
13
50
1.73
104490072--104490261
50
3.8
50
83
2
220
24
15
27
32
1.95
104490462--104490491
16
1.9
15
93
6
51
43
0
23
33
1.54
104493035--104493064
14
2.1
14
93
0
51
40
16
13
30
1.87
104496010--104496073
32
2.0
32
96
0
119
15
26
15
42
1.87
104496744--104496775
9
3.6
9
91
0
55
25
9
21
43
1.82
104497534--104497577
23
1.9
23
95
0
79
13
31
27
27
1.94
104503909--104503941
12
2.8
12
100
0
66
30
24
0
45
1.53
104512330--104512366
13
2.8
13
91
4
56
51
21
0
27
1.48
104515098--104515595
47
10.5
47
94
2
843
32
8
29
29
1.87
104515098--104515595
96
5.2
96
95
1
864
32
8
29
29
1.87
104515714--104515851
37
3.7
37
95
0
231
24
17
31
26
1.97
104517690--104517730
21
1.9
22
85
5
57
39
17
2
41
1.62
104517974--104518004
16
1.9
16
93
0
53
16
9
0
74
1.07
104526198--104526224
12
2.2
12
100
0
54
59
25
0
14
1.36
104527940--104527979
2
20.0
2
100
0
80
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104531118--104531230
58
1.9
58
85
3
156
24
11
18
45
1.83
104531120--104531246
58
2.2
58
83
4
150
24
11
15
48
1.79
104532362--104532413
24
2.2
24
82
6
61
44
5
1
48
1.38
104532399--104532503
31
3.4
30
77
7
113
54
2
2
40
1.30
104532370--104532521
61
2.5
61
90
0
232
50
3
1
44
1.32
104532399--104532503
16
6.9
15
66
26
51
54
2
2
40
1.30
104534765--104534815
19
2.7
19
78
6
50
25
1
11
60
1.41
104539493--104539538
24
1.9
24
90
0
74
45
0
0
54
0.99
104540098--104540131
14
2.4
14
90
9
52
61
0
2
35
1.11
104540461--104540498
9
4.3
9
81
18
53
42
0
2
55
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362