Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  313  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104540461--104540498
13
2.9
13
77
14
51
42
0
2
55
1.14
104540489--104540531
22
2.0
21
86
13
61
60
2
0
37
1.10
104545775--104545807
15
2.2
15
94
0
57
63
0
6
30
1.18
104546978--104547063
43
2.0
43
86
0
118
54
0
24
20
1.45
104547036--104547102
7
9.9
7
71
12
50
49
0
23
26
1.51
104547048--104547110
29
2.3
27
86
5
81
49
0
23
26
1.51
104548762--104548795
16
2.1
16
88
0
50
52
0
0
47
1.00
104548768--104548806
19
2.1
19
85
9
53
46
0
0
53
1.00
104549051--104549081
3
10.3
3
100
0
62
67
0
0
32
0.91
104553666--104553710
22
2.0
22
91
8
74
37
24
0
37
1.56
104553860--104553957
49
2.0
48
88
3
144
33
6
3
57
1.39
104555596--104555627
13
2.5
13
94
0
55
31
0
12
56
1.37
104555722--104555963
50
4.7
50
83
4
279
26
23
28
20
1.99
104555722--104555971
100
2.4
104
86
6
357
26
23
28
21
1.99
104562903--104562960
30
1.9
30
89
0
89
41
3
24
31
1.71
104563172--104563203
13
2.5
13
94
0
55
31
0
12
56
1.37
104563298--104563462
50
3.2
50
86
5
204
26
23
30
20
1.99
104566279--104566467
56
3.4
56
96
0
342
37
3
6
52
1.43
104570940--104571213
46
6.0
46
92
0
424
39
14
23
22
1.91
104573274--104573650
126
3.0
126
84
0
477
28
17
16
37
1.92
104574424--104574461
20
1.9
20
84
10
51
42
13
23
21
1.88
104576355--104576536
46
4.0
46
93
1
285
38
14
24
22
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104577210--104577252
12
3.6
12
78
12
52
41
0
0
58
0.98
104577236--104577303
26
2.6
26
97
0
127
41
16
0
42
1.48
104577301--104577336
17
2.0
17
89
10
54
55
27
0
16
1.42
104577314--104577363
22
2.3
22
85
0
64
54
34
0
12
1.38
104577809--104577862
27
2.0
27
100
0
108
40
11
22
25
1.87
104591930--104592050
38
3.3
37
76
10
108
43
1
0
53
1.16
104597512--104597717
113
1.8
113
92
2
351
22
16
17
42
1.88
104607546--104607603
18
3.4
18
69
26
63
37
6
1
53
1.38
104607542--104607606
32
2.0
32
100
0
130
41
6
3
49
1.43
104615841--104615919
3
26.0
3
82
7
88
31
8
0
59
1.28
104615854--104615919
27
2.4
27
92
0
105
31
9
0
59
1.29
104619542--104619753
51
4.2
51
92
0
352
33
12
21
32
1.91
104619542--104619756
102
2.1
102
96
1
396
33
12
21
32
1.91
104623249--104623360
51
2.2
51
93
0
197
40
13
20
25
1.89
104624201--104624413
46
4.6
46
90
2
306
41
12
23
22
1.88
104624248--104624319
21
3.2
21
65
14
54
41
9
23
25
1.84
104627073--104627106
17
1.9
18
88
5
52
2
23
0
73
0.97
104633548--104633591
23
1.9
23
100
0
88
40
2
0
56
1.11
104637669--104637734
33
2.0
33
94
5
116
43
13
6
36
1.69
104642270--104642328
30
1.9
31
89
3
93
69
0
13
16
1.19
104646627--104646707
39
2.1
39
90
4
128
40
6
27
25
1.79
104659742--104660484
44
17.1
44
89
2
1106
28
16
32
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104659742--104660484
216
3.4
217
88
3
1055
28
16
32
22
1.96
104661355--104661383
12
2.5
12
94
5
51
89
0
6
3
0.57
104661878--104661958
39
2.1
39
95
4
146
43
4
27
24
1.75
104662365--104662425
31
2.0
30
84
9
79
39
4
3
52
1.39
104667456--104667572
51
2.3
51
80
8
130
44
17
18
18
1.87
104668440--104668474
15
2.5
13
83
16
52
60
0
0
40
0.97
104668444--104668498
5
10.8
5
88
3
83
56
1
0
41
1.10
104668662--104668711
20
2.5
21
77
9
59
46
16
0
38
1.47
104675945--104675989
5
8.8
5
80
4
54
53
2
2
42
1.25
104683563--104683607
5
8.8
5
80
4
54
53
2
2
42
1.25
104689315--104689410
46
2.1
46
94
3
167
58
11
6
23
1.56
104692601--104692643
21
2.0
21
90
0
68
13
27
18
39
1.89
104693246--104693352
41
2.7
39
84
5
128
26
14
22
36
1.93
104697885--104698179
78
3.8
77
90
3
468
22
23
26
28
1.99
104697885--104698197
116
2.7
116
91
2
486
22
23
25
29
1.99
104697885--104698179
38
7.6
38
93
2
464
22
23
26
28
1.99
104705260--104705392
66
2.0
66
98
0
257
17
18
36
27
1.93
104707678--104707801
30
4.1
30
91
1
194
26
23
6
43
1.78
104707688--104707795
15
7.2
15
69
12
78
26
21
7
44
1.78
104712364--104712487
30
4.1
30
90
1
185
26
23
5
44
1.75
104712374--104712481
15
7.2
15
64
12
60
26
21
6
45
1.76
104713794--104713833
18
2.2
18
86
8
55
15
20
27
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104716597--104716634
20
1.9
20
88
0
58
28
0
0
71
0.87
104716568--104716645
28
2.8
28
80
5
79
37
1
1
60
1.13
104717148--104717188
14
2.8
15
82
10
50
58
0
4
36
1.20
104721264--104721476
106
2.0
106
88
3
313
39
11
17
31
1.85
104724666--104724705
20
2.0
20
100
0
80
30
5
30
35
1.79
104725335--104725404
26
2.7
26
88
2
106
38
22
21
17
1.93
104725335--104725419
26
3.3
25
80
8
91
36
22
23
17
1.95
104740217--104740337
55
2.2
55
85
5
165
43
1
32
22
1.63
104742909--104742954
21
2.2
21
92
0
74
45
41
0
13
1.43
104742915--104742966
21
2.5
21
96
0
95
44
36
0
19
1.51
104752051--104752080
15
2.0
15
93
0
51
50
0
10
40
1.36
104758456--104758484
13
2.1
14
93
6
51
27
3
0
68
1.05
104758486--104758546
20
3.0
21
75
20
58
21
1
1
75
0.98
104758480--104758546
30
2.3
30
82
12
77
22
1
1
74
0.98
104761190--104761373
96
1.9
95
90
4
289
26
15
27
30
1.96
104761988--104762017
15
2.0
15
93
0
51
50
0
10
40
1.36
104761984--104762046
27
2.3
26
76
10
63
39
0
11
49
1.38
104764492--104764551
24
2.6
22
78
14
68
41
0
1
56
1.09
104771979--104772936
481
2.0
480
96
0
1772
31
20
16
31
1.95
104775240--104775390
53
2.8
53
88
4
205
26
16
27
29
1.97
104776648--104776695
23
2.1
23
92
0
78
35
14
14
35
1.87
104783002--104783048
6
7.4
7
92
4
50
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104783010--104783047
3
12.7
3
100
0
76
68
0
0
31
0.90
104784179--104784213
16
2.1
16
89
10
52
51
0
0
48
1.00
104789601--104789631
9
3.4
9
95
0
53
45
16
35
3
1.63
104791308--104791363
24
2.4
23
82
8
78
53
0
0
46
1.00
104791596--104791653
26
2.2
26
87
0
80
48
12
12
27
1.76
104807468--104807509
22
1.9
22
85
0
57
69
14
2
14
1.30
104808698--104808777
39
2.1
39
88
4
117
48
21
2
27
1.63
104808701--104808796
39
2.5
39
84
3
113
44
23
2
29
1.65
104815029--104815112
9
9.6
9
81
10
102
41
20
10
27
1.85
104815029--104815112
17
4.8
18
85
7
102
41
20
10
27
1.85
104815128--104815188
17
3.4
17
70
12
59
50
14
3
31
1.59
104815119--104815193
37
2.0
37
100
0
150
45
16
5
33
1.69
104815119--104815210
37
2.5
37
91
7
134
45
15
6
32
1.71
104817620--104817678
21
2.8
21
85
15
70
55
3
0
40
1.16
104817629--104817678
21
2.5
20
90
9
77
56
4
0
40
1.18
104817726--104817759
11
3.0
11
83
8
50
64
2
0
32
1.08
104848502--104848544
22
2.0
22
85
0
59
16
2
9
72
1.21
104860292--104860356
20
3.3
19
79
10
69
35
1
3
60
1.22
104865922--104865998
40
1.9
40
84
10
104
24
16
25
32
1.96
104865920--104866016
40
2.4
41
77
6
101
23
17
27
30
1.97
104877800--104877928
58
2.2
58
80
2
141
36
22
6
34
1.79
104878737--104878765
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104881180--104881263
3
28.3
3
75
15
77
61
2
4
30
1.29
104882755--104882848
44
2.1
44
80
7
111
28
23
18
29
1.97
104882711--104882975
142
1.9
142
87
1
388
29
20
17
32
1.96
104882877--104883106
44
5.2
44
69
10
184
27
20
18
33
1.96
104882877--104883101
87
2.6
88
92
2
364
27
20
18
33
1.96
104883083--104883364
87
3.3
86
70
16
269
28
20
20
30
1.97
104883203--104883490
46
6.6
44
71
13
204
28
19
20
32
1.97
104883159--104883447
83
3.4
83
72
15
295
27
20
19
32
1.97
104883083--104883494
170
2.4
170
95
0
736
28
20
19
31
1.97
104882952--104883490
44
12.5
44
67
15
243
28
20
19
32
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362