Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  334  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111390213--111390268
27
2.1
26
83
9
69
41
1
0
57
1.09
111390276--111390369
26
3.6
26
79
2
89
28
5
7
58
1.47
111395178--111395421
126
1.9
127
86
1
348
36
13
9
40
1.77
111396655--111396740
30
2.9
30
89
3
138
16
50
6
26
1.70
111397247--111397331
3
28.0
3
73
19
63
30
3
1
64
1.17
111397371--111397551
92
1.9
92
80
13
210
28
9
4
58
1.49
111409363--111409408
24
1.9
24
82
8
58
47
0
0
52
1.00
111412906--111413054
43
3.5
42
88
3
219
29
29
18
22
1.97
111413286--111413324
19
2.1
18
85
4
51
66
2
2
28
1.18
111421252--111421514
46
5.7
46
92
0
393
38
15
24
21
1.92
111421203--111421514
138
2.3
129
87
5
417
38
16
24
21
1.93
111421775--111421821
25
2.0
25
83
8
62
53
4
14
27
1.60
111422545--111422583
19
2.1
19
90
4
62
48
2
2
46
1.29
111423603--111423744
41
3.5
41
86
1
198
23
21
20
35
1.96
111423603--111423758
80
1.9
82
86
2
226
23
22
19
34
1.96
111425732--111425768
19
1.9
19
89
10
58
54
8
2
35
1.44
111428573--111428618
24
1.9
24
100
0
92
41
2
17
39
1.62
111441520--111441563
20
2.1
21
83
4
54
13
13
2
70
1.26
111442678--111442704
3
9.0
3
100
0
54
33
0
0
66
0.92
111447037--111447082
19
2.4
18
89
10
74
54
0
2
43
1.12
111447041--111447088
10
4.6
11
82
12
50
52
0
2
45
1.12
111447715--111447860
74
2.0
73
82
6
179
32
14
13
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111448560--111448636
31
2.5
31
82
0
91
22
12
9
55
1.65
111449689--111449766
31
2.5
31
79
8
86
48
14
6
30
1.68
111465411--111465453
21
2.0
21
86
0
59
58
4
11
25
1.52
111465814--111465870
22
2.6
22
81
10
64
59
3
12
24
1.48
111465821--111465869
11
4.5
11
78
0
53
61
4
12
22
1.48
111465835--111465878
22
2.0
22
81
0
52
61
6
13
18
1.54
111467405--111467443
20
2.0
20
84
0
51
79
2
10
7
1.02
111468767--111468796
14
2.1
14
93
0
51
50
13
0
36
1.42
111471201--111471249
20
2.4
21
83
10
66
53
0
0
46
1.00
111487383--111487607
112
2.0
112
99
0
441
40
12
16
30
1.86
111491576--111491611
18
2.0
18
94
0
63
58
0
0
41
0.98
111495174--111495243
29
2.4
29
80
7
70
50
12
8
28
1.70
111497037--111497079
11
3.8
11
80
17
52
30
2
2
65
1.18
111497040--111497083
23
1.9
23
90
0
70
31
2
4
61
1.28
111499410--111499473
11
5.9
11
78
8
69
23
12
1
62
1.38
111499410--111499473
33
2.0
32
84
9
85
23
12
1
62
1.38
111500464--111500505
17
2.4
18
80
15
52
33
7
7
52
1.56
111502050--111502146
33
2.8
35
72
20
89
45
2
1
51
1.19
111502913--111502945
11
2.9
12
86
13
52
33
0
0
66
0.92
111515764--111515837
21
3.2
21
74
22
69
43
0
4
52
1.20
111515827--111515881
21
2.6
21
88
8
76
38
1
1
58
1.20
111515939--111515971
14
2.3
15
94
5
59
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111516200--111516243
20
2.2
20
84
11
56
18
4
2
75
1.09
111516214--111516251
18
2.1
18
85
9
51
13
5
5
76
1.13
111516310--111516366
25
2.4
24
80
13
64
40
0
5
54
1.23
111516356--111516389
12
2.8
12
87
12
52
35
0
0
64
0.94
111516375--111516425
21
2.4
21
86
3
66
37
1
1
58
1.20
111516371--111516428
21
2.9
20
80
7
64
41
1
1
55
1.20
111516446--111516509
26
2.4
27
82
10
69
17
10
4
67
1.38
111516499--111516536
18
2.1
19
90
5
60
21
0
0
78
0.74
111516572--111516616
22
2.0
23
86
4
65
40
0
0
60
0.97
111516593--111516688
33
2.8
32
81
13
95
40
2
2
55
1.23
111516646--111516706
20
3.0
20
75
11
54
44
1
1
52
1.20
111516785--111516859
23
3.2
23
86
7
89
36
0
4
60
1.16
111516762--111516828
10
6.3
10
74
17
55
34
0
2
62
1.10
111516800--111516859
24
2.5
23
89
5
84
40
0
5
55
1.22
111517023--111517074
22
2.3
23
90
6
79
59
0
0
40
0.97
111517116--111517159
20
2.2
20
88
12
63
77
0
4
18
0.94
111517109--111517176
25
2.7
25
84
11
77
76
1
4
17
1.03
111517191--111517223
11
3.1
11
86
8
50
78
0
6
15
0.93
111517209--111517278
31
2.2
32
89
2
106
62
1
0
35
1.04
111517336--111517376
21
2.0
20
85
4
55
75
0
2
21
0.92
111517412--111517450
19
2.1
19
90
0
60
76
2
2
17
1.01
111517765--111517819
21
2.5
22
85
8
69
60
1
1
36
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111517899--111517952
14
3.9
14
79
13
58
79
1
9
9
1.00
111517907--111517960
28
2.0
27
85
10
74
79
3
11
5
1.02
111518311--111518353
22
1.9
22
85
4
59
53
4
0
41
1.21
111521478--111521535
31
1.9
30
82
3
71
36
18
12
32
1.88
111525425--111525462
19
2.0
19
89
0
58
36
0
5
57
1.21
111527996--111528086
41
2.2
41
98
1
175
36
24
9
29
1.88
111538118--111538167
24
2.0
25
84
3
66
6
20
54
20
1.65
111542192--111542254
25
2.6
24
80
5
72
19
26
19
34
1.95
111544605--111544641
3
12.3
3
100
0
74
67
0
0
32
0.91
111547377--111547408
5
6.6
5
92
7
57
18
0
0
81
0.70
111547377--111547407
9
3.3
9
91
8
53
19
0
0
80
0.71
111551836--111551867
5
6.6
5
92
7
57
18
0
0
81
0.70
111551836--111551866
14
2.2
14
100
0
62
19
0
0
80
0.71
111558361--111558616
45
5.6
45
84
6
263
19
18
17
44
1.87
111558364--111558619
90
2.8
92
83
8
292
19
19
17
44
1.87
111562671--111562710
13
3.0
13
88
3
53
82
0
12
5
0.82
111562671--111562700
14
2.1
14
100
0
60
86
0
13
0
0.57
111566550--111566646
50
1.9
50
89
0
149
62
1
5
30
1.23
111574993--111575021
3
9.7
3
100
0
58
0
31
0
68
0.89
111575313--111575340
10
2.8
10
100
0
56
28
0
0
71
0.86
111577810--111577843
15
2.2
16
89
5
52
64
0
5
29
1.17
111578365--111578397
15
2.2
15
89
10
50
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111583066--111583102
9
4.2
9
89
3
58
75
0
0
24
0.80
111585720--111585777
16
4.1
15
77
22
63
44
0
5
50
1.24
111587353--111587390
19
2.0
19
100
0
76
42
21
15
21
1.89
111594037--111594074
19
2.1
18
85
14
51
42
5
0
52
1.24
111596127--111596180
27
2.1
26
89
6
83
53
5
5
35
1.48
111620377--111620401
2
12.5
2
100
0
50
48
0
0
52
1.00
111621054--111621088
18
1.9
18
88
0
52
51
0
0
48
1.00
111621045--111621101
24
2.4
24
74
11
62
56
0
0
43
0.99
111621102--111621129
12
2.3
12
100
0
56
32
0
0
67
0.91
111630056--111630099
8
5.6
8
81
5
54
38
0
2
59
1.10
111630068--111630098
15
2.1
15
93
0
53
38
0
0
61
0.96
111630055--111630099
23
1.9
24
90
4
74
40
0
2
57
1.11
111630054--111630110
23
2.5
23
82
5
71
42
0
1
56
1.10
111630099--111630146
10
4.5
10
79
10
51
47
6
0
45
1.27
111630104--111630145
11
4.1
10
82
14
50
42
7
0
50
1.30
111630224--111630315
19
4.7
19
72
18
66
27
2
2
68
1.13
111630685--111630709
13
1.9
13
100
0
50
60
24
0
16
1.36
111631147--111631178
8
4.0
8
95
0
55
34
12
15
37
1.85
111634830--111634867
20
1.9
20
84
10
51
39
7
0
52
1.31
111635618--111635687
25
3.2
20
70
26
61
54
0
0
45
0.99
111635612--111635698
46
1.9
45
97
2
165
52
0
0
47
1.00
111635612--111635714
46
2.3
45
90
8
158
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111637442--111637518
31
2.5
32
77
10
88
40
0
5
54
1.23
111637483--111637525
11
3.7
11
82
11
50
37
0
2
60
1.10
111639524--111639707
46
4.0
46
84
4
212
40
13
23
22
1.90
111650701--111650736
18
2.0
18
88
0
54
55
11
2
30
1.49
111662606--111662648
3
14.3
3
82
0
50
6
0
23
69
1.12
111662606--111662654
12
4.1
12
83
0
62
8
0
24
67
1.18
111667763--111667802
20
2.0
20
100
0
80
30
10
5
55
1.54
111671744--111671829
26
3.3
26
90
0
145
33
5
24
36
1.79
111674505--111674560
26
2.2
26
100
0
112
30
7
26
35
1.83
111677742--111677814
32
2.3
32
100
0
146
39
5
4
50
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362