genome.fa.s8.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  140  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46640534--46640704	46	3.7	46	77	13	172	30	29	18	21	1.97
46642551--46642724	27	6.4	26	80	6	161	27	16	28	28	1.97
46642551--46642706	82	1.9	81	86	3	224	26	16	28	28	1.97
46642547--46642724	82	2.2	81	81	3	214	27	16	27	28	1.97
46645208--46645350	68	2.1	68	98	1	277	44	17	2	35	1.64
46650666--46650788	55	2.2	56	88	2	176	26	12	28	33	1.92
46650666--46650788	28	4.4	28	90	2	176	26	12	28	33	1.92
46650691--46650801	28	4.0	27	90	3	116	28	11	26	33	1.91
46658892--46658989	28	3.5	28	92	1	162	27	12	27	32	1.92
46658892--46659002	28	4.0	27	88	3	89	29	11	25	33	1.91
46660574--46660625	26	2.0	26	92	0	86	53	13	5	26	1.62
46662148--46662328	40	4.6	40	87	2	251	22	27	23	26	1.99
46674492--46674729	50	4.8	49	78	4	217	30	26	17	25	1.97
46674492--46674735	49	4.9	49	77	4	220	30	26	17	25	1.97
46681555--46681585	15	2.1	15	93	0	53	38	16	9	35	1.81
46690846--46690997	42	3.7	41	76	5	117	30	22	15	31	1.95
46701241--46701403	42	3.9	42	83	4	186	28	25	15	29	1.96
46719228--46719311	26	3.3	26	83	9	113	26	23	21	28	1.99
46719363--46719415	20	2.8	20	86	11	67	33	18	9	37	1.83
46719443--46719490	25	1.9	25	82	0	60	29	14	20	35	1.93
46725086--46725214	64	2.0	64	93	0	222	27	20	17	34	1.95
46728374--46728467	40	2.3	40	84	10	113	28	27	14	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46736751--46736976	40	5.7	39	81	9	233	24	21	28	25	1.99
46736751--46736975	120	1.9	119	81	6	276	24	21	28	25	1.99
46754103--46754198	48	2.0	48	100	0	192	31	12	18	37	1.88
46767445--46767539	45	2.1	45	88	3	138	25	18	29	26	1.98
46767852--46768339	45	10.9	45	90	1	696	24	19	26	29	1.99
46775544--46775580	18	2.1	18	89	0	56	10	8	24	56	1.60
46777330--46777396	20	3.3	20	95	0	116	37	10	19	32	1.86
46777324--46777390	9	7.0	9	79	12	71	37	8	19	34	1.83
46777330--46777410	40	2.0	39	83	9	101	37	11	18	33	1.86
46777442--46777525	25	3.4	25	91	6	136	27	22	21	28	1.99
46777442--46777537	49	1.9	50	83	10	126	26	23	21	28	1.99
46785213--46785258	24	1.9	24	86	0	65	34	23	8	32	1.86
46785307--46785343	11	3.5	11	78	14	51	35	13	18	32	1.90
46785301--46785343	20	2.2	20	95	0	77	34	11	20	32	1.89
46785390--46785472	25	3.4	25	91	6	134	27	20	21	30	1.98
46785681--46785771	38	2.8	31	76	23	105	36	16	23	24	1.94
46786707--46786892	40	4.7	40	85	3	234	24	27	20	26	1.99
46788150--46788190	21	2.0	21	85	9	57	36	26	2	34	1.70
46794498--46794672	40	4.4	40	86	2	228	24	27	21	26	1.99
46795941--46795981	21	2.0	21	85	9	57	36	26	2	34	1.70
46800213--46800310	27	3.5	28	88	5	128	32	28	13	25	1.93
46810959--46811052	47	2.0	47	97	0	179	28	25	30	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46818447--46818488	19	2.2	19	87	8	59	45	0	23	30	1.53
46821169--46821707	180	3.0	180	88	1	805	37	8	20	33	1.83
46823621--46823699	37	2.1	37	90	0	122	25	31	18	24	1.98
46823817--46824295	47	10.1	47	94	3	793	29	30	8	31	1.87
46827773--46827851	37	2.1	37	90	0	122	25	31	18	24	1.98
46827979--46828447	47	9.8	48	94	4	799	29	29	8	31	1.88
46827969--46828447	96	5.0	95	96	2	799	29	29	8	31	1.87
46834270--46834463	47	4.1	47	91	0	289	32	10	28	27	1.90
46834342--46834417	22	3.3	22	65	28	59	30	13	31	25	1.93
46834433--46834763	48	6.8	48	91	5	531	34	6	27	31	1.82
46834433--46834763	146	2.3	144	90	6	540	34	6	27	31	1.82
46834433--46834763	98	3.4	97	94	2	576	34	6	27	31	1.82
46834910--46835018	37	2.9	37	93	0	182	22	20	30	26	1.98
46841874--46841948	38	2.0	37	92	2	123	28	17	12	42	1.84
46843156--46843232	40	1.9	40	91	0	127	24	20	23	31	1.98
46843160--46843252	40	2.3	40	83	0	123	26	19	23	30	1.98
46851324--46851770	27	16.5	27	84	4	526	29	26	14	28	1.96
46851376--46851769	81	4.9	81	98	0	734	29	26	15	28	1.96
46858565--46858643	37	2.1	37	88	4	115	25	30	18	25	1.98
46858762--46859251	47	10.5	47	95	0	813	28	29	8	32	1.87
46858762--46859251	187	2.6	188	94	0	849	28	29	8	32	1.87
46858762--46859251	234	2.1	234	92	0	829	28	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46864490--46864665	46	3.8	46	78	14	200	21	20	28	29	1.98
46864487--46864658	93	1.8	93	93	2	301	21	20	29	28	1.98
46870043--46870194	42	3.5	44	79	6	143	26	21	27	24	1.99
46874533--46874562	12	2.5	12	94	0	51	13	10	16	60	1.59
46880681--46880729	21	2.2	23	89	7	75	32	0	24	42	1.55
46887380--46887491	42	2.6	42	79	9	120	25	17	25	31	1.97
46893150--46893183	18	2.0	16	88	11	50	26	0	41	32	1.56
46893628--46893685	30	2.0	30	86	3	82	46	10	8	34	1.69
46898865--46898916	23	2.4	20	87	12	68	63	0	5	30	1.18
46898857--46898918	23	2.8	20	79	18	61	62	0	6	30	1.20
46900744--46902328	206	7.7	206	92	0	2571	28	23	17	30	1.97
46913507--46913558	23	2.4	20	87	12	68	63	0	5	30	1.18
46913499--46913560	23	2.8	20	79	18	61	62	0	6	30	1.20
46916831--46917027	27	7.3	27	83	5	229	28	25	7	38	1.83
46917019--46917209	27	7.1	27	80	12	162	40	21	9	28	1.85
46917026--46917209	54	3.4	53	80	5	192	41	20	9	28	1.83
46917058--46917208	81	1.9	81	86	8	218	42	21	7	28	1.81
46917329--46917399	26	2.7	27	74	12	67	38	18	22	21	1.94
46918198--46918267	25	2.8	24	89	4	95	24	25	24	25	2.00
46918415--46918548	42	3.2	42	96	0	250	31	14	19	34	1.92
46918572--46918686	31	3.7	31	90	1	178	29	15	25	29	1.96
46920473--46920866	47	8.4	47	93	2	657	29	30	7	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46920523--46920648	25	5.3	25	65	18	88	30	30	5	32	1.81
46924789--46925100	40	7.8	40	91	0	455	25	30	21	22	1.99
46924813--46925100	120	2.4	120	93	0	504	26	31	20	21	1.98
46926950--46927343	47	8.4	47	93	1	664	29	30	7	32	1.86
46927000--46927125	25	5.3	25	65	18	88	30	30	5	32	1.81
46927213--46927335	22	5.3	22	63	24	65	27	30	9	31	1.89
46934571--46934623	27	2.0	27	85	7	72	18	24	24	32	1.97
46938439--46938520	27	3.0	26	75	7	67	31	18	28	21	1.97
46940903--46941306	47	8.6	47	91	1	614	28	29	8	32	1.87
46940903--46941297	192	2.1	190	90	1	623	28	29	8	32	1.87
46941514--46941557	19	2.3	19	96	0	79	29	9	22	38	1.85
46944673--46945095	40	10.7	40	88	4	628	24	28	22	24	1.99
46947315--46947720	47	8.6	47	91	3	618	29	29	8	32	1.87
46947315--46947720	96	4.3	94	91	3	618	29	29	8	32	1.87
46951384--46951458	27	2.8	27	82	13	84	36	21	24	18	1.95
46951587--46951646	27	2.2	28	80	16	74	30	15	20	35	1.93
46951882--46951906	8	3.1	8	100	0	50	12	24	12	52	1.72
46954181--46954232	27	2.0	26	88	3	77	34	23	19	23	1.96
46957699--46958124	160	2.7	161	93	1	732	26	28	20	24	1.99
46957690--46958124	40	10.9	40	89	1	602	26	28	20	24	1.99
46959565--46959655	46	2.0	46	82	4	112	26	30	7	35	1.85
46959980--46960053	23	3.2	23	64	17	62	31	28	10	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46959669--46960070	47	8.6	47	92	0	615	25	27	12	34	1.92
46959654--46960101	141	3.2	141	89	0	626	26	27	11	33	1.91
46963820--46964336	40	12.9	40	87	0	656	26	28	20	25	1.99
46963822--46964336	160	3.2	160	92	0	798	26	27	20	25	1.99
46965778--46965865	46	1.9	46	85	0	122	29	31	5	32	1.81
46965882--46966283	47	8.6	47	89	0	572	25	26	12	35	1.92
46965862--46966314	141	3.2	141	87	0	593	26	27	11	34	1.91
46972971--46972998	14	2.0	14	100	0	56	35	7	7	50	1.57
46975949--46976072	46	2.7	46	84	5	151	27	19	32	20	1.97
46982841--46983052	47	4.5	46	79	9	198	27	17	29	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362