genome.fa.s8.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  157  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51439669--51439804	40	3.4	40	85	3	168	30	26	18	25	1.98
51439672--51439851	79	2.3	80	80	11	201	28	27	20	23	1.99
51445225--51445445	103	2.2	102	91	4	356	18	19	31	31	1.95
51445366--51445514	70	2.1	71	91	2	239	23	16	28	30	1.96
51445473--51445524	27	1.9	27	92	0	86	15	23	32	28	1.95
51452774--51452997	104	2.2	104	93	1	378	17	19	31	31	1.95
51453027--51453078	26	2.0	26	92	0	86	15	21	34	28	1.94
51452916--51453066	72	2.1	72	91	2	243	23	16	29	30	1.96
51455138--51455213	38	2.0	38	100	0	152	26	5	26	42	1.76
51467124--51467162	20	1.9	21	84	5	53	7	30	5	56	1.49
51469114--51469197	29	2.9	28	75	7	71	70	2	5	21	1.20
51470462--51470518	29	1.9	30	82	3	71	56	21	3	19	1.57
51474971--51475096	47	2.7	45	81	8	139	23	25	20	30	1.98
51487971--51488122	43	3.7	41	80	8	164	26	15	25	32	1.96
51487968--51488119	40	3.7	41	83	8	175	26	16	25	32	1.96
51491542--51491679	40	3.5	40	83	4	172	23	19	30	26	1.98
51500395--51500442	25	1.9	25	86	0	69	31	22	18	27	1.97
51500478--51500544	20	3.3	20	93	4	109	35	11	19	32	1.88
51500489--51500544	11	5.5	11	73	16	57	35	12	19	32	1.89
51500594--51500660	25	2.6	25	85	2	89	23	23	23	28	2.00
51510035--51510200	40	4.2	40	86	5	212	23	20	27	28	1.99
51513960--51514018	30	2.0	30	86	0	82	25	27	6	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51520673--51520707	13	2.7	13	100	0	70	25	34	8	31	1.86
51523432--51523603	46	3.7	46	75	14	183	22	20	26	29	1.99
51523429--51523598	92	1.8	93	92	1	288	22	21	27	28	1.99
51527186--51527227	21	2.0	21	85	0	57	21	16	42	19	1.89
51528898--51529020	45	2.7	45	86	9	144	29	30	20	20	1.97
51529440--51529498	30	2.0	29	86	3	82	28	25	6	38	1.81
51531791--51531969	81	2.2	81	82	3	214	25	13	26	33	1.94
51531791--51531975	41	4.5	41	83	2	210	26	14	25	33	1.94
51538623--51538750	39	3.3	39	92	0	202	25	26	28	19	1.99
51538623--51538778	39	4.0	39	89	0	186	25	26	27	20	1.99
51540033--51540195	43	3.8	43	75	12	138	23	17	25	33	1.96
51546715--51546751	15	2.4	16	91	8	60	0	37	2	59	1.12
51548812--51548853	20	2.1	20	82	8	50	38	23	9	28	1.86
51557255--51557310	27	2.1	27	100	0	112	25	14	16	44	1.84
51557261--51557318	27	2.1	27	87	0	80	24	22	12	41	1.87
51560520--51560563	18	2.5	18	88	3	63	47	2	0	50	1.13
51561075--51561108	15	2.2	16	89	5	52	55	0	0	44	0.99
51566708--51566964	40	6.5	40	89	2	342	24	28	23	22	2.00
51579399--51579573	78	2.4	71	85	10	214	34	22	12	30	1.91
51581394--51581584	50	3.8	50	86	5	262	28	24	18	28	1.98
51582396--51582456	30	2.0	30	87	0	86	29	22	4	42	1.75
51585915--51585974	30	2.0	30	90	0	93	28	25	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51590301--51590334	11	3.2	10	88	12	50	70	0	0	29	0.87
51591818--51591995	27	6.6	27	84	3	205	29	28	15	26	1.96
51591839--51591994	82	1.9	81	88	3	233	29	28	15	26	1.96
51593788--51593901	44	2.5	46	81	5	142	28	14	21	36	1.92
51600315--51600578	40	6.7	40	89	4	358	24	22	27	25	2.00
51600316--51600611	80	3.7	77	83	9	305	25	21	27	24	2.00
51623149--51623193	16	2.8	16	93	0	72	46	17	22	13	1.83
51623149--51623199	16	3.2	15	88	5	66	47	17	21	13	1.82
51632149--51632208	28	2.2	26	77	11	66	26	26	11	35	1.91
51632163--51632234	28	2.6	28	88	0	99	29	27	12	30	1.93
51638239--51638390	40	3.8	41	89	3	211	24	21	28	25	1.99
51638239--51638410	80	2.2	80	84	3	213	23	20	27	27	1.99
51646389--51646540	40	3.8	41	89	3	211	24	21	28	25	1.99
51646389--51646560	80	2.2	80	84	3	213	23	20	27	27	1.99
51648625--51649096	57	8.2	57	94	0	800	28	36	18	16	1.93
51650898--51650957	28	2.2	26	77	11	66	26	26	11	35	1.91
51650912--51650983	28	2.6	28	88	0	99	29	27	12	30	1.93
51654030--51654071	21	2.0	21	100	0	84	19	4	4	71	1.22
51662910--51663094	100	1.8	101	87	3	275	27	16	24	31	1.97
51662911--51663135	49	4.5	48	77	14	208	27	16	24	32	1.96
51662910--51663144	100	2.4	99	82	7	262	26	16	24	31	1.96
51663235--51663286	25	2.0	26	81	11	61	40	0	21	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51665587--51665757	39	4.3	39	90	4	272	28	30	21	19	1.98
51667492--51667532	19	2.2	19	90	0	64	39	9	0	51	1.35
51672386--51672498	39	2.8	39	91	2	181	30	27	22	19	1.98
51673017--51673118	27	3.8	25	79	15	98	39	20	21	18	1.93
51673017--51673128	54	2.1	54	85	6	147	39	22	20	17	1.93
51673041--51673127	27	3.2	27	75	14	88	39	24	19	17	1.92
51674547--51674617	24	3.0	24	95	0	124	25	38	1	35	1.65
51676147--51676184	17	2.2	18	85	4	51	71	10	2	15	1.25
51678052--51678121	17	3.9	18	74	9	63	67	0	4	28	1.10
51685549--51685609	30	2.0	30	83	0	77	31	22	8	37	1.84
51691667--51691739	37	2.0	37	97	0	137	57	5	12	24	1.56
51700886--51700945	26	2.4	24	83	8	75	68	3	0	28	1.05
51700916--51700974	21	2.8	22	85	7	70	69	6	0	23	1.12
51701010--51701073	22	2.7	24	79	13	62	62	0	1	35	1.05
51705688--51705991	47	6.4	47	92	1	428	34	8	29	27	1.87
51708388--51708591	27	7.6	27	85	4	241	27	14	27	29	1.95
51718286--51718594	48	6.4	48	97	0	546	33	8	28	29	1.86
51718767--51718980	37	5.8	37	96	0	392	23	19	32	24	1.98
51738651--51738694	19	2.4	19	85	7	56	50	0	9	40	1.34
51738787--51738811	3	8.3	3	100	0	50	36	0	0	64	0.94
51741577--51741838	40	6.6	40	88	1	366	26	21	25	26	1.99
51745625--51745827	40	5.2	40	90	5	299	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51752933--51753195	40	6.7	40	85	5	286	26	27	20	24	1.99
51753633--51753670	19	2.0	19	100	0	76	15	21	52	10	1.72
51759936--51760197	119	2.2	119	82	5	307	26	27	20	24	1.99
51759934--51760197	40	6.7	40	85	6	304	26	28	20	24	1.99
51759934--51760197	79	3.3	81	85	4	263	26	28	20	24	1.99
51763418--51763621	40	5.2	40	86	6	265	25	27	22	24	2.00
51763418--51763621	79	2.6	78	86	6	261	25	27	22	24	2.00
51771069--51771109	21	2.0	21	100	0	82	24	24	31	19	1.98
51771028--51771149	61	2.0	61	96	0	226	24	22	28	23	1.99
51771089--51771224	40	3.4	40	90	3	204	25	22	27	24	2.00
51780813--51780846	18	1.9	18	88	5	52	29	11	20	38	1.88
51781928--51782013	28	3.0	28	83	3	109	25	27	13	32	1.94
51781950--51782013	29	2.2	28	88	2	101	28	28	12	31	1.93
51786296--51786406	58	1.9	58	88	1	170	25	30	16	27	1.96
51786305--51786419	29	4.0	28	84	4	140	26	29	15	28	1.96
51786630--51786674	16	2.8	16	86	0	54	15	22	15	46	1.83
51787843--51787954	27	4.2	26	83	7	134	37	22	24	16	1.93
51790827--51791035	79	2.7	79	87	0	303	21	22	27	28	1.99
51790843--51791088	118	2.1	118	86	1	341	20	23	27	28	1.99
51790827--51791056	39	5.9	39	90	1	325	20	23	28	28	1.99
51792007--51792051	9	4.9	9	88	2	63	46	6	11	35	1.66
51793760--51793931	93	1.8	93	93	0	299	28	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51793753--51793928	46	3.8	46	77	12	189	29	29	20	20	1.98
51802380--51802457	27	2.9	26	84	7	93	34	21	24	19	1.96
51811907--51811976	28	2.5	28	88	9	99	31	27	14	27	1.95
51819691--51819760	28	2.5	28	88	9	99	31	27	14	27	1.95
51825035--51825068	17	2.0	17	94	0	59	29	8	5	55	1.54
51836305--51836367	12	5.7	11	76	14	51	77	1	7	12	1.05
51836297--51836378	43	1.9	42	83	11	105	78	1	6	14	1.01
51836291--51836356	20	3.5	20	72	14	59	78	1	4	15	0.98
51838980--51839012	13	2.6	13	90	4	50	48	12	0	39	1.40
51845251--51845435	40	4.7	40	83	6	225	25	28	22	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362