Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  270  of  362  ( 43380 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91293869--91293992
48
2.6
48
84
2
160
19
17
29
33
1.95
91304234--91304258
13
1.9
13
100
0
50
88
4
8
0
0.64
91305336--91305558
39
5.6
40
85
8
273
25
22
26
25
2.00
91305336--91305558
79
2.8
81
84
9
289
25
22
26
25
2.00
91305336--91305592
79
3.3
79
81
11
228
26
21
26
24
2.00
91313317--91313540
40
5.7
40
85
8
275
25
22
27
25
2.00
91313317--91313540
79
2.8
81
84
9
291
25
22
27
25
2.00
91313317--91313573
79
3.3
79
82
10
226
26
21
27
24
1.99
91315029--91315088
30
2.0
30
87
12
88
31
21
5
41
1.75
91316616--91316679
31
2.1
31
88
5
94
37
3
12
46
1.57
91316705--91316771
31
2.2
31
89
2
100
35
10
7
46
1.66
91319122--91319169
22
2.2
22
96
0
87
33
27
6
33
1.82
91333941--91334015
28
2.7
28
81
4
89
29
10
30
29
1.91
91336722--91336819
48
2.0
48
84
7
128
27
15
29
27
1.96
91346320--91346428
48
2.3
45
83
12
132
27
18
31
22
1.97
91350309--91350414
51
2.1
51
87
7
153
22
16
30
30
1.96
91359285--91359322
20
2.0
20
89
5
60
2
63
0
34
1.09
91361008--91361061
24
2.2
24
78
15
58
22
16
1
59
1.47
91373122--91373389
40
6.7
40
94
0
464
22
26
20
30
1.98
91381959--91382226
40
6.7
40
94
0
464
22
26
20
30
1.98
91386427--91386503
26
3.0
26
86
0
109
2
31
35
31
1.72
91392804--91392830
11
2.5
11
100
0
54
59
0
0
40
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91394105--91394129
11
2.3
11
100
0
50
68
8
16
8
1.38
91394505--91395237
367
2.0
367
96
0
1360
28
14
19
37
1.91
91395538--91395583
13
3.6
13
94
2
76
39
0
13
47
1.42
91400940--91400999
28
2.1
29
84
9
79
16
8
0
75
1.04
91400951--91401015
29
2.3
28
79
10
69
20
7
0
72
1.09
91403889--91403921
13
2.6
13
90
4
50
39
0
12
48
1.40
91406942--91406975
14
2.4
14
90
0
50
14
35
20
29
1.93
91414182--91414408
48
4.7
48
74
8
165
23
29
19
27
1.98
91414231--91414451
96
2.3
95
81
7
250
25
30
16
27
1.96
91414279--91414451
48
3.6
47
75
9
152
27
30
15
26
1.96
91414281--91414492
96
2.2
95
80
8
225
26
31
16
25
1.97
91414185--91414495
144
2.2
144
77
5
315
24
30
17
27
1.97
91457040--91457097
21
2.8
21
83
0
80
39
12
17
31
1.86
91466409--91466653
40
6.3
40
90
5
349
26
29
20
24
1.99
91466407--91466653
117
2.1
115
86
4
343
26
29
20
23
1.99
91466409--91466653
77
3.1
77
86
8
334
26
29
20
24
1.99
91466439--91466706
117
2.3
116
84
7
328
26
29
19
23
1.98
91466638--91466715
40
1.9
41
82
10
97
26
28
21
23
1.99
91481302--91481458
43
3.7
41
77
9
120
33
24
16
25
1.96
91481302--91481458
86
1.8
85
82
9
203
33
24
16
25
1.96
91487113--91487318
55
3.8
53
78
6
216
34
16
25
23
1.95
91487117--91487317
108
1.8
110
88
2
307
34
16
25
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91491198--91491322
46
2.7
46
92
0
205
30
30
20
19
1.97
91495343--91495525
50
3.7
49
81
6
206
30
25
18
26
1.98
91495343--91495526
101
1.8
99
87
2
269
29
25
17
26
1.98
91510378--91510438
29
2.1
29
90
3
97
27
13
29
29
1.94
91515970--91516024
11
5.5
10
79
12
60
36
10
18
34
1.86
91516072--91516141
25
2.8
25
91
0
113
24
24
22
28
1.99
91516193--91516271
38
2.1
38
84
13
101
16
16
37
29
1.91
91516338--91516421
31
2.7
31
90
1
134
33
19
25
22
1.97
91523914--91523968
11
5.5
10
79
12
60
36
10
18
34
1.86
91524016--91524084
25
2.8
25
84
2
95
23
24
24
27
2.00
91524304--91524387
31
2.7
31
90
1
134
32
16
26
25
1.96
91525068--91525101
13
2.6
13
90
0
50
17
32
29
20
1.96
91529547--91529610
32
2.0
32
100
0
128
31
15
12
40
1.85
91536111--91536156
25
1.9
23
86
8
65
28
0
8
63
1.24
91536403--91536441
16
2.4
16
91
0
60
48
25
17
7
1.74
91536669--91536727
30
2.0
30
86
0
82
30
8
28
32
1.87
91536711--91536773
28
2.2
28
83
5
74
28
17
33
20
1.95
91538927--91539097
43
4.0
42
78
10
132
36
26
15
21
1.93
91542427--91542591
48
3.5
48
85
4
194
27
21
26
24
1.99
91554039--91554194
27
5.7
27
82
4
179
27
15
28
28
1.96
91554038--91554189
55
2.8
55
86
4
218
28
15
28
27
1.96
91554039--91554194
82
1.9
81
85
3
215
27
15
28
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91554038--91554215
27
6.6
27
81
3
178
27
15
28
28
1.96
91554037--91554215
82
2.2
80
81
6
200
27
16
28
27
1.97
91562133--91562283
55
2.8
55
86
3
216
27
15
29
27
1.96
91562133--91562288
82
1.9
81
85
3
215
26
15
29
28
1.96
91562133--91562288
27
5.7
27
84
4
188
26
15
29
28
1.96
91562133--91562309
27
6.5
27
78
8
144
26
15
29
28
1.96
91562131--91562309
82
2.2
80
81
6
200
26
16
29
27
1.97
91563749--91564567
407
2.0
408
96
0
1514
31
13
21
32
1.93
91568296--91568407
54
2.1
54
100
0
224
25
21
13
40
1.89
91569211--91569275
28
2.4
28
81
2
69
27
26
21
24
1.99
91569417--91569482
28
2.4
26
70
25
64
40
21
19
18
1.91
91582866--91582897
16
2.0
16
93
0
55
46
18
21
12
1.82
91594262--91594304
23
1.9
22
85
4
59
48
27
6
16
1.71
91594535--91594841
155
2.0
155
94
0
533
37
20
13
28
1.90
91609949--91610380
50
8.6
50
73
7
266
25
17
24
32
1.96
91609998--91610388
151
2.6
150
87
3
570
26
18
23
31
1.97
91609951--91610338
101
3.8
100
70
11
265
25
17
23
33
1.96
91609994--91610389
50
7.9
50
73
5
296
26
18
23
31
1.97
91614789--91614822
17
1.9
18
94
5
61
20
44
23
11
1.84
91614788--91614829
18
2.3
18
84
8
59
23
42
21
11
1.86
91625879--91625913
18
2.0
18
88
5
54
37
8
14
40
1.76
91627298--91627417
40
3.0
40
74
6
116
33
21
18
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91628559--91628583
9
2.8
9
100
0
50
48
0
32
20
1.50
91633949--91634182
49
4.7
50
82
3
276
26
17
25
29
1.98
91637253--91637332
40
2.0
40
100
0
160
35
20
10
35
1.86
91649720--91649944
40
5.6
40
93
0
378
24
23
26
25
2.00
91654938--91655006
21
3.4
21
72
11
72
10
21
24
43
1.83
91654920--91655058
39
3.6
39
92
0
215
12
24
23
38
1.90
91659771--91659834
21
3.2
21
71
13
71
10
28
18
42
1.84
91659752--91659875
39
3.2
39
82
6
153
15
26
20
37
1.92
91660443--91660472
12
2.5
12
94
0
51
26
0
6
66
1.16
91662317--91662356
8
5.0
8
90
0
53
47
25
22
5
1.71
91662771--91662882
27
4.2
26
78
7
107
17
22
21
38
1.93
91662771--91662882
54
2.1
54
86
3
154
17
22
21
38
1.93
91670305--91670404
27
3.7
26
80
9
110
18
23
21
38
1.94
91698745--91698955
106
2.0
106
97
0
395
38
23
7
30
1.81
91706084--91706110
8
3.4
8
100
0
54
11
0
0
88
0.50
91712787--91712922
56
2.4
56
88
2
193
33
22
14
29
1.94
91718650--91718799
27
5.5
27
83
6
178
26
16
29
27
1.97
91718650--91718799
55
2.7
54
84
7
196
26
16
29
27
1.97
91718650--91718799
82
1.8
81
85
4
212
26
16
29
27
1.97
91718759--91718826
26
2.6
26
88
2
91
22
16
32
29
1.95
91726658--91726813
82
1.9
81
85
3
215
26
16
29
27
1.96
91726658--91726808
55
2.8
54
85
3
205
27
16
29
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91726658--91726813
27
5.7
27
83
6
181
26
16
29
27
1.96
91726767--91726834
27
2.5
27
90
0
100
23
16
30
29
1.96
91726656--91726834
82
2.2
80
81
6
200
26
16
29
27
1.97
91728544--91728574
16
1.9
16
93
0
53
38
12
6
41
1.69
91728761--91728925
56
2.9
56
83
6
192
33
24
14
27
1.94
91734868--91735024
42
3.7
43
78
9
151
27
26
19
26
1.99
91738458--91738679
40
5.6
40
79
9
222
27
27
20
24
1.99
91738458--91738627
80
2.1
79
88
5
245
28
28
19
24
1.98
91738458--91738676
79
2.7
80
81
6
230
27
26
21
24
1.99
91743392--91743663
40
6.8
40
90
0
420
26
29
22
22
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362