genome.fa.s8.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Length:  119882356

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   

This is table  139  of  362  ( 43380 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46425776--46425948	54	3.2	53	82	6	213	25	20	19	35	1.95
46432493--46432652	67	2.3	70	88	6	227	33	22	25	19	1.97
46433232--46433293	27	2.3	27	86	2	81	35	17	20	25	1.95
46433287--46433535	27	9.2	27	84	1	284	25	20	18	36	1.95
46433287--46433535	81	3.1	81	85	2	347	25	20	18	36	1.95
46435371--46435611	40	6.1	40	87	2	308	26	28	22	22	1.99
46436856--46436983	52	2.4	53	92	5	206	16	21	9	53	1.71
46443540--46443801	40	6.6	40	81	5	257	28	27	21	22	1.99
46443540--46443801	80	3.3	79	82	5	298	28	27	21	22	1.99
46443580--46443801	120	1.9	120	87	3	331	28	27	22	22	1.99
46445045--46445166	53	2.3	54	87	7	169	15	21	11	51	1.74
46446545--46446772	27	8.4	27	89	0	330	32	13	17	37	1.88
46446765--46446875	27	4.2	26	71	16	84	43	18	17	20	1.88
46447223--46447281	18	3.3	18	78	0	64	23	20	15	40	1.90
46448351--46448424	9	8.0	9	82	11	87	44	17	0	37	1.49
46456009--46456190	28	6.5	28	82	2	213	32	27	14	25	1.94
46456031--46456192	84	1.9	84	87	2	236	32	25	14	27	1.95
46459489--46459515	13	2.1	13	100	0	54	29	11	14	44	1.80
46460207--46460255	20	2.4	21	83	6	57	40	0	4	55	1.19
46462090--46462302	46	4.6	46	83	3	259	42	13	25	18	1.87
46462100--46462302	92	2.2	92	89	1	300	42	14	25	18	1.87
46463175--46463220	20	2.3	20	82	14	60	28	28	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46464439--46464646	27	7.7	27	84	3	240	40	20	8	30	1.81
46464439--46464698	54	4.8	54	82	6	179	40	20	10	28	1.86
46464494--46464876	81	4.7	80	81	5	355	36	20	16	26	1.93
46464610--46464903	27	11.0	27	84	1	367	34	19	20	25	1.96
46465329--46465393	22	3.0	22	80	8	78	21	21	21	35	1.96
46465552--46465653	27	3.8	27	85	7	127	18	22	21	37	1.94
46465785--46465872	6	14.3	6	72	17	65	21	18	12	47	1.81
46465785--46465888	31	3.4	31	77	4	104	21	17	12	49	1.79
46466416--46466827	27	15.3	27	82	1	450	26	19	18	35	1.95
46466417--46466793	54	7.0	54	89	0	511	25	20	18	35	1.95
46466785--46466882	27	3.6	27	87	2	126	25	7	23	43	1.79
46468855--46468929	6	12.3	6	71	13	55	50	13	16	20	1.77
46468864--46468938	37	2.0	37	86	0	105	49	12	18	20	1.79
46468878--46468950	37	2.0	37	86	0	101	49	12	16	21	1.78
46469072--46469152	27	3.0	26	87	5	99	37	22	23	17	1.94
46469310--46469368	22	2.7	22	81	0	64	30	22	25	22	1.99
46469735--46470014	27	10.6	27	79	9	281	26	18	18	35	1.95
46469737--46470020	103	2.7	103	84	6	333	27	19	17	35	1.94
46469998--46470069	27	2.7	27	87	6	101	25	6	25	43	1.79
46469734--46470068	130	2.5	132	81	7	365	26	17	19	36	1.93
46478822--46478849	14	2.0	14	100	0	56	35	0	21	42	1.53
46481285--46481519	28	8.4	28	81	3	258	31	27	14	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484011--46484095	29	3.0	29	87	1	118	25	14	31	28	1.94
46489251--46489302	26	2.0	27	84	3	70	19	21	19	40	1.92
46490871--46490943	35	2.1	35	100	0	146	35	5	19	39	1.75
46492303--46492653	43	8.2	43	93	0	549	12	23	32	31	1.92
46492772--46492822	25	2.0	25	84	0	66	27	11	31	29	1.92
46492810--46492909	29	3.4	29	65	10	78	24	22	25	29	1.99
46492807--46492972	58	2.9	58	90	0	262	23	21	27	27	1.99
46492832--46492975	29	5.0	28	68	10	103	23	20	28	27	1.99
46492890--46492975	28	3.0	28	71	8	84	22	20	30	26	1.98
46492897--46492993	28	3.4	28	72	9	81	20	20	31	26	1.97
46496930--46497002	35	2.1	35	97	0	137	35	5	20	38	1.76
46499957--46500054	34	2.9	34	90	0	142	24	23	23	28	2.00
46508488--46508660	46	3.7	46	74	10	172	21	19	26	31	1.98
46508485--46508655	93	1.8	93	88	0	261	21	19	27	30	1.98
46508885--46508922	19	2.0	20	85	15	53	36	0	23	39	1.55
46515211--46515404	47	4.1	47	88	0	271	34	11	27	26	1.91
46515375--46515558	98	1.9	96	89	4	289	36	5	26	30	1.81
46515374--46515558	48	3.8	48	87	5	282	36	5	26	31	1.81
46515704--46515812	37	2.9	37	91	0	164	23	19	30	26	1.98
46520177--46520346	46	3.7	46	74	14	172	22	20	26	30	1.99
46520571--46520608	19	2.0	20	85	15	53	36	0	23	39	1.55
46524194--46524313	27	4.5	27	82	7	138	20	22	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46524226--46524333	52	2.1	53	89	1	164	18	18	20	42	1.89
46524222--46524335	27	4.3	27	86	6	153	19	18	19	42	1.89
46524330--46524455	27	4.7	27	86	0	171	35	16	16	30	1.92
46537788--46537884	43	2.4	39	78	17	101	36	21	12	29	1.90
46550212--46550343	50	2.6	52	84	6	180	34	15	12	37	1.85
46550228--46550350	52	2.4	52	86	5	153	31	14	13	39	1.85
46551772--46551829	29	2.0	29	96	0	107	39	10	24	25	1.87
46554425--46554449	5	5.0	5	100	0	50	80	0	0	20	0.72
46557712--46558382	47	14.3	47	92	0	1090	33	8	29	28	1.87
46560330--46560411	38	2.2	38	88	0	119	32	14	28	24	1.94
46560500--46560690	40	4.8	40	95	0	337	20	24	29	25	1.99
46564003--46564813	47	17.3	47	92	0	1336	33	9	29	28	1.88
46564288--46564363	22	3.3	22	64	10	62	32	10	27	28	1.90
46567886--46568029	40	3.6	40	89	2	193	25	22	27	25	2.00
46570286--46570338	19	2.8	19	82	2	63	33	5	0	60	1.20
46570269--46570338	9	7.4	9	73	7	59	31	7	1	60	1.33
46571999--46572030	4	8.0	4	92	0	55	71	0	3	25	1.00
46574153--46574201	6	8.3	6	95	4	73	0	63	0	36	0.95
46574150--46574203	17	3.2	17	83	0	72	0	59	0	40	0.98
46577174--46577231	22	2.5	25	78	18	63	32	0	5	62	1.18
46577382--46577458	14	5.0	15	71	20	52	45	15	6	32	1.72
46577386--46577451	34	1.9	34	87	6	98	48	13	6	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46577421--46577460	14	2.9	14	85	10	55	47	17	2	32	1.61
46581832--46581897	34	1.9	34	93	0	114	43	18	19	18	1.88
46585146--46585307	42	3.8	42	80	8	175	25	26	16	31	1.96
46586617--46586764	65	2.3	65	80	0	161	37	20	18	23	1.94
46588525--46588688	43	3.8	43	77	10	147	26	15	23	34	1.95
46599065--46599682	27	22.9	27	88	6	851	26	22	10	39	1.87
46599062--46599682	54	11.5	54	90	2	953	26	23	10	39	1.87
46599692--46599885	27	7.2	27	82	3	212	36	16	20	26	1.93
46599700--46599885	81	2.3	81	84	1	239	36	17	20	25	1.94
46600086--46600168	27	3.1	26	84	5	94	19	21	20	38	1.93
46600256--46600314	22	2.7	22	81	0	64	20	25	22	32	1.98
46600479--46600553	27	2.8	27	84	6	82	18	22	21	37	1.94
46600670--46600789	6	19.8	6	77	14	122	20	17	15	47	1.83
46602788--46603431	27	23.9	27	83	6	761	27	22	9	40	1.84
46603441--46603608	27	6.2	27	81	2	176	37	17	19	25	1.93
46603440--46603607	81	2.1	81	81	2	203	38	16	19	25	1.93
46603444--46603604	54	3.0	54	85	0	205	37	17	20	24	1.94
46603809--46603891	27	3.1	26	84	5	94	19	21	20	38	1.93
46605154--46605547	47	8.4	47	92	0	608	28	30	8	32	1.86
46608302--46608358	22	2.6	22	80	0	60	19	26	22	31	1.98
46608713--46608911	6	32.8	6	77	15	205	19	17	14	48	1.81
46608713--46608911	97	2.1	97	92	3	330	19	17	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46608713--46608911	30	6.4	30	87	9	274	19	17	14	48	1.81
46610133--46610192	30	2.0	30	96	0	111	36	15	26	21	1.93
46620526--46620599	37	2.0	37	100	0	148	27	5	13	54	1.61
46621788--46621859	37	2.0	34	81	7	81	5	37	1	55	1.32
46623071--46623182	27	4.2	26	78	10	109	16	22	24	37	1.93
46630847--46630952	27	3.9	26	86	7	140	16	24	22	35	1.95
46630847--46630954	54	2.0	54	89	3	164	16	24	22	37	1.94
46633616--46633726	40	2.8	40	92	0	186	33	26	18	22	1.96
46637829--46637874	23	2.0	23	100	0	92	47	0	26	26	1.52
46640540--46640709	93	1.8	93	89	2	270	30	30	18	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362